data_4GS4 # _model_server_result.job_id V7nY6NflUgxp8_bE19_LUw _model_server_result.datetime_utc '2024-11-27 18:06:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gs4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4GS4 # _exptl.entry_id 4GS4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 809.571 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETYL COENZYME *A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4GS4 _cell.length_a 97.931 _cell.length_b 130.668 _cell.length_c 37.423 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GS4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 21 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ILE 47 A ILE 43 1_555 A N MSE 48 A MSE 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C MSE 48 A MSE 44 1_555 A N THR 49 A THR 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C ARG 73 A ARG 69 1_555 A N MSE 74 A MSE 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 A C MSE 74 A MSE 70 1_555 A N GLN 75 A GLN 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C TYR 146 A TYR 142 1_555 A N MSE 147 A MSE 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 A C MSE 147 A MSE 143 1_555 A N LEU 148 A LEU 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? # _chem_comp.formula 'C23 H38 N7 O17 P3 S' _chem_comp.formula_weight 809.571 _chem_comp.id ACO _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETYL COENZYME *A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A ACO sing 1 n y N1A C6A ACO doub 2 n y C2A N3A ACO doub 3 n y C2A H2A ACO sing 4 n n N3A C4A ACO sing 5 n y C4A C5A ACO doub 6 n y C4A N9A ACO sing 7 n y C5A C6A ACO sing 8 n y C5A N7A ACO sing 9 n y C6A N6A ACO sing 10 n n N6A H61A ACO sing 11 n n N6A H62A ACO sing 12 n n N7A C8A ACO doub 13 n y C8A N9A ACO sing 14 n y C8A H8A ACO sing 15 n n N9A C1B ACO sing 16 n n C1B C2B ACO sing 17 n n C1B O4B ACO sing 18 n n C1B H1B ACO sing 19 n n C2B O2B ACO sing 20 n n C2B C3B ACO sing 21 n n C2B H2B ACO sing 22 n n O2B HO2A ACO sing 23 n n C3B O3B ACO sing 24 n n C3B C4B ACO sing 25 n n C3B H3B ACO sing 26 n n O3B P3B ACO sing 27 n n P3B O7A ACO doub 28 n n P3B O8A ACO sing 29 n n P3B O9A ACO sing 30 n n O8A HOA8 ACO sing 31 n n O9A HOA9 ACO sing 32 n n C4B O4B ACO sing 33 n n C4B C5B ACO sing 34 n n C4B H4B ACO sing 35 n n C5B O5B ACO sing 36 n n C5B H51A ACO sing 37 n n C5B H52A ACO sing 38 n n O5B P1A ACO sing 39 n n P1A O1A ACO doub 40 n n P1A O2A ACO sing 41 n n P1A O3A ACO sing 42 n n O2A HOA2 ACO sing 43 n n O3A P2A ACO sing 44 n n P2A O4A ACO doub 45 n n P2A O5A ACO sing 46 n n P2A O6A ACO sing 47 n n O5A HOA5 ACO sing 48 n n O6A CCP ACO sing 49 n n CBP CCP ACO sing 50 n n CBP CDP ACO sing 51 n n CBP CEP ACO sing 52 n n CBP CAP ACO sing 53 n n CCP H121 ACO sing 54 n n CCP H122 ACO sing 55 n n CDP H131 ACO sing 56 n n CDP H132 ACO sing 57 n n CDP H133 ACO sing 58 n n CEP H141 ACO sing 59 n n CEP H142 ACO sing 60 n n CEP H143 ACO sing 61 n n CAP OAP ACO sing 62 n n CAP C9P ACO sing 63 n n CAP H10 ACO sing 64 n n OAP HO1 ACO sing 65 n n C9P O9P ACO doub 66 n n C9P N8P ACO sing 67 n n N8P C7P ACO sing 68 n n N8P HN8 ACO sing 69 n n C7P C6P ACO sing 70 n n C7P H71 ACO sing 71 n n C7P H72 ACO sing 72 n n C6P C5P ACO sing 73 n n C6P H61 ACO sing 74 n n C6P H62 ACO sing 75 n n C5P O5P ACO doub 76 n n C5P N4P ACO sing 77 n n N4P C3P ACO sing 78 n n N4P HN4 ACO sing 79 n n C3P C2P ACO sing 80 n n C3P H31 ACO sing 81 n n C3P H32 ACO sing 82 n n C2P S1P ACO sing 83 n n C2P H21 ACO sing 84 n n C2P H22 ACO sing 85 n n S1P C ACO sing 86 n n C O ACO doub 87 n n C CH3 ACO sing 88 n n CH3 HH31 ACO sing 89 n n CH3 HH32 ACO sing 90 n n CH3 HH33 ACO sing 91 n n # _atom_sites.entry_id 4GS4 _atom_sites.fract_transf_matrix[1][1] 0.010211 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007653 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026722 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACO A 1 401 401 ACO ACO . C 3 HOH A 1 501 1 HOH HOH . C 3 HOH A 2 502 2 HOH HOH . C 3 HOH A 3 503 3 HOH HOH . C 3 HOH A 4 504 4 HOH HOH . C 3 HOH A 5 505 5 HOH HOH . C 3 HOH A 6 506 6 HOH HOH . C 3 HOH A 7 507 7 HOH HOH . C 3 HOH A 8 508 8 HOH HOH . C 3 HOH A 9 509 9 HOH HOH . C 3 HOH A 10 510 10 HOH HOH . C 3 HOH A 11 511 11 HOH HOH . C 3 HOH A 12 512 12 HOH HOH . C 3 HOH A 13 513 13 HOH HOH . C 3 HOH A 14 514 14 HOH HOH . C 3 HOH A 15 515 15 HOH HOH . C 3 HOH A 16 516 16 HOH HOH . C 3 HOH A 17 517 17 HOH HOH . C 3 HOH A 18 518 18 HOH HOH . C 3 HOH A 19 519 19 HOH HOH . C 3 HOH A 20 520 20 HOH HOH . C 3 HOH A 21 521 21 HOH HOH . C 3 HOH A 22 522 22 HOH HOH . C 3 HOH A 23 523 23 HOH HOH . C 3 HOH A 24 524 24 HOH HOH . C 3 HOH A 25 525 25 HOH HOH . C 3 HOH A 26 526 26 HOH HOH . C 3 HOH A 27 527 27 HOH HOH . C 3 HOH A 28 528 28 HOH HOH . C 3 HOH A 29 529 29 HOH HOH . C 3 HOH A 30 530 30 HOH HOH . C 3 HOH A 31 531 31 HOH HOH . C 3 HOH A 32 532 32 HOH HOH . C 3 HOH A 33 533 33 HOH HOH . C 3 HOH A 34 534 34 HOH HOH . C 3 HOH A 35 535 35 HOH HOH . C 3 HOH A 36 536 36 HOH HOH . C 3 HOH A 37 537 37 HOH HOH . C 3 HOH A 38 538 38 HOH HOH . C 3 HOH A 39 539 39 HOH HOH . C 3 HOH A 40 540 40 HOH HOH . C 3 HOH A 41 541 41 HOH HOH . C 3 HOH A 42 542 42 HOH HOH . C 3 HOH A 43 543 43 HOH HOH . C 3 HOH A 44 544 44 HOH HOH . C 3 HOH A 45 545 45 HOH HOH . C 3 HOH A 46 546 46 HOH HOH . C 3 HOH A 47 547 47 HOH HOH . C 3 HOH A 48 548 48 HOH HOH . C 3 HOH A 49 549 49 HOH HOH . C 3 HOH A 50 550 50 HOH HOH . C 3 HOH A 51 551 51 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A ACO . . . B 2 33.316 33.444 43.246 1 32.06 ? N1A ACO 401 A 1 HETATM 2 C C2A ACO . . . B 2 34.468 32.831 42.937 1 37.23 ? C2A ACO 401 A 1 HETATM 3 N N3A ACO . . . B 2 34.746 31.57 43.273 1 34.24 ? N3A ACO 401 A 1 HETATM 4 C C4A ACO . . . B 2 33.868 30.825 43.954 1 30.01 ? C4A ACO 401 A 1 HETATM 5 C C5A ACO . . . B 2 32.579 31.42 44.334 1 35.82 ? C5A ACO 401 A 1 HETATM 6 C C6A ACO . . . B 2 32.341 32.815 43.931 1 39.58 ? C6A ACO 401 A 1 HETATM 7 N N6A ACO . . . B 2 31.201 33.463 44.222 1 29 ? N6A ACO 401 A 1 HETATM 8 N N7A ACO . . . B 2 31.928 30.472 44.986 1 29.42 ? N7A ACO 401 A 1 HETATM 9 C C8A ACO . . . B 2 32.742 29.354 45.019 1 36.56 ? C8A ACO 401 A 1 HETATM 10 N N9A ACO . . . B 2 33.909 29.576 44.391 1 36.03 ? N9A ACO 401 A 1 HETATM 11 C C1B ACO . . . B 2 35.105 28.706 44.165 1 38.2 ? C1B ACO 401 A 1 HETATM 12 C C2B ACO . . . B 2 36.455 29.278 44.613 1 46.14 ? C2B ACO 401 A 1 HETATM 13 O O2B ACO . . . B 2 37.57 28.551 44.094 1 41.35 ? O2B ACO 401 A 1 HETATM 14 C C3B ACO . . . B 2 36.455 28.931 46.062 1 45.48 ? C3B ACO 401 A 1 HETATM 15 O O3B ACO . . . B 2 37.749 28.969 46.648 1 63.65 ? O3B ACO 401 A 1 HETATM 16 P P3B ACO . . . B 2 38.257 30.327 47.303 1 48.33 ? P3B ACO 401 A 1 HETATM 17 O O7A ACO . . . B 2 37.151 30.733 48.251 1 48.85 ? O7A ACO 401 A 1 HETATM 18 O O8A ACO . . . B 2 38.353 31.256 46.116 1 55.11 ? O8A ACO 401 A 1 HETATM 19 O O9A ACO . . . B 2 39.561 29.926 47.951 1 54.98 ? O9A ACO 401 A 1 HETATM 20 C C4B ACO . . . B 2 35.907 27.526 45.994 1 46.97 ? C4B ACO 401 A 1 HETATM 21 O O4B ACO . . . B 2 35.008 27.484 44.884 1 40.72 ? O4B ACO 401 A 1 HETATM 22 C C5B ACO . . . B 2 35.191 27.223 47.281 1 33.13 ? C5B ACO 401 A 1 HETATM 23 O O5B ACO . . . B 2 34.86 25.846 47.26 1 25.6 ? O5B ACO 401 A 1 HETATM 24 P P1A ACO . . . B 2 33.595 25.411 48.071 1 37.16 ? P1A ACO 401 A 1 HETATM 25 O O1A ACO . . . B 2 33.457 26.409 49.214 1 40.86 ? O1A ACO 401 A 1 HETATM 26 O O2A ACO . . . B 2 33.585 23.914 48.303 1 38.26 ? O2A ACO 401 A 1 HETATM 27 O O3A ACO . . . B 2 32.548 25.668 46.893 1 33.77 ? O3A ACO 401 A 1 HETATM 28 P P2A ACO . . . B 2 30.969 25.704 46.995 1 29.8 ? P2A ACO 401 A 1 HETATM 29 O O4A ACO . . . B 2 30.677 27.167 47.02 1 28.73 ? O4A ACO 401 A 1 HETATM 30 O O5A ACO . . . B 2 30.475 24.795 48.068 1 35.08 ? O5A ACO 401 A 1 HETATM 31 O O6A ACO . . . B 2 30.361 25.121 45.653 1 32.36 ? O6A ACO 401 A 1 HETATM 32 C CBP ACO . . . B 2 29.715 25.395 43.321 1 27.48 ? CBP ACO 401 A 1 HETATM 33 C CCP ACO . . . B 2 30.793 25.618 44.402 1 33.51 ? CCP ACO 401 A 1 HETATM 34 C CDP ACO . . . B 2 29.629 26.382 42.149 1 30.2 ? CDP ACO 401 A 1 HETATM 35 C CEP ACO . . . B 2 28.509 24.491 43.628 1 23.17 ? CEP ACO 401 A 1 HETATM 36 C CAP ACO . . . B 2 28.908 26.447 44.089 1 28.32 ? CAP ACO 401 A 1 HETATM 37 O OAP ACO . . . B 2 29.713 27.622 44.084 1 29.39 ? OAP ACO 401 A 1 HETATM 38 C C9P ACO . . . B 2 27.547 26.759 43.465 1 32.91 ? C9P ACO 401 A 1 HETATM 39 O O9P ACO . . . B 2 26.548 26.102 43.78 1 32.6 ? O9P ACO 401 A 1 HETATM 40 N N8P ACO . . . B 2 27.47 27.764 42.569 1 30.22 ? N8P ACO 401 A 1 HETATM 41 C C7P ACO . . . B 2 26.24 28.141 41.924 1 32.8 ? C7P ACO 401 A 1 HETATM 42 C C6P ACO . . . B 2 25.826 27.177 40.835 1 30.75 ? C6P ACO 401 A 1 HETATM 43 C C5P ACO . . . B 2 26.987 26.877 39.885 1 29.82 ? C5P ACO 401 A 1 HETATM 44 O O5P ACO . . . B 2 27.725 27.761 39.448 1 27.12 ? O5P ACO 401 A 1 HETATM 45 N N4P ACO . . . B 2 27.119 25.577 39.577 1 34.41 ? N4P ACO 401 A 1 HETATM 46 C C3P ACO . . . B 2 28.124 25.027 38.711 1 37.4 ? C3P ACO 401 A 1 HETATM 47 C C2P ACO . . . B 2 27.522 25.234 37.339 1 42.34 ? C2P ACO 401 A 1 HETATM 48 S S1P ACO . . . B 2 28.007 24.053 36.122 1 35.6 ? S1P ACO 401 A 1 HETATM 49 C C ACO . . . B 2 27.71 22.425 36.338 1 45.25 ? C ACO 401 A 1 HETATM 50 O O ACO . . . B 2 26.789 22.029 37.028 1 46.4 ? O ACO 401 A 1 HETATM 51 C CH3 ACO . . . B 2 28.64 21.51 35.638 1 40.26 ? CH3 ACO 401 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 51 #