data_4GS8 # _model_server_result.job_id 41y_gzFoC3-gVIXDF_7GKA _model_server_result.datetime_utc '2024-10-22 21:41:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gs8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1101}' # _entry.id 4GS8 # _exptl.entry_id 4GS8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 401.459 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(carboxymethyl)-N-(3-phenylpropyl)glycyl-N-methyl-L-histidinamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4GS8 _cell.length_a 263.553 _cell.length_b 263.553 _cell.length_c 91.095 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GS8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 79 A HIS 108 1_555 D ZN ZN . A ZN 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc2 A NE2 HIS 83 A HIS 112 1_555 D ZN ZN . A ZN 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc3 A OE1 GLU 160 A GLU 189 1_555 D ZN ZN . A ZN 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? metalc ? metalc4 A OE2 GLU 160 A GLU 189 1_555 D ZN ZN . A ZN 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc5 D ZN ZN . A ZN 1102 1_555 G O HOH . A HOH 1225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc6 B NE2 HIS 79 B HIS 108 1_555 F ZN ZN . B ZN 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc7 B NE2 HIS 83 B HIS 112 1_555 F ZN ZN . B ZN 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc8 F ZN ZN . B ZN 1102 1_555 H O HOH . B HOH 1209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? # _chem_comp.formula 'C20 H27 N5 O4' _chem_comp.formula_weight 401.459 _chem_comp.id MGJ _chem_comp.mon_nstd_flag . _chem_comp.name N-(carboxymethyl)-N-(3-phenylpropyl)glycyl-N-methyl-L-histidinamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '[{[(S)-2-(1H-Imidazol-4-yl)-1-methylcarbamoyl-ethylcarbamoyl]-methyl}-(3-phenyl-propyl)-amino]-acetic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 N09 MGJ sing 237 n y C10 N11 MGJ doub 238 n y C10 H10 MGJ sing 239 n n N12 C13 MGJ sing 240 n n N12 C05 MGJ sing 241 n n N12 HN12 MGJ sing 242 n n C13 C15 MGJ sing 243 n n C13 O14 MGJ doub 244 n n C15 N16 MGJ sing 245 n n C15 H15 MGJ sing 246 n n C15 H15A MGJ sing 247 n n C17 N16 MGJ sing 248 n n C17 C18 MGJ sing 249 n n C17 H17 MGJ sing 250 n n C17 H17A MGJ sing 251 n n C20 C21 MGJ doub 252 n y C20 C19 MGJ sing 253 n n C20 C25 MGJ sing 254 n y C21 C22 MGJ sing 255 n y C21 H21 MGJ sing 256 n n C22 C23 MGJ doub 257 n y C22 H22 MGJ sing 258 n n C24 C23 MGJ sing 259 n y C24 C25 MGJ doub 260 n y C24 H24 MGJ sing 261 n n C26 N16 MGJ sing 262 n n C26 C27 MGJ sing 263 n n C26 H26 MGJ sing 264 n n C26 H26A MGJ sing 265 n n O04 C03 MGJ doub 266 n n C03 N02 MGJ sing 267 n n C03 C05 MGJ sing 268 n n N02 C01 MGJ sing 269 n n N02 HN02 MGJ sing 270 n n C01 H01 MGJ sing 271 n n C01 H01A MGJ sing 272 n n C01 H01B MGJ sing 273 n n C05 C06 MGJ sing 274 n n C05 H05 MGJ sing 275 n n C06 C07 MGJ sing 276 n n C06 H06 MGJ sing 277 n n C06 H06A MGJ sing 278 n n C07 C08 MGJ doub 279 n y C07 N11 MGJ sing 280 n y C08 N09 MGJ sing 281 n y C08 H08 MGJ sing 282 n n N09 HN09 MGJ sing 283 n n C27 O28 MGJ sing 284 n n C27 O29 MGJ doub 285 n n C18 C19 MGJ sing 286 n n C18 H18 MGJ sing 287 n n C18 H18A MGJ sing 288 n n C19 H19 MGJ sing 289 n n C19 H19A MGJ sing 290 n n C23 H23 MGJ sing 291 n n C25 H25 MGJ sing 292 n n O28 H27 MGJ sing 293 n n # _atom_sites.entry_id 4GS8 _atom_sites.fract_transf_matrix[1][1] 0.003794 _atom_sites.fract_transf_matrix[1][2] 0.002191 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004381 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010978 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MGJ A 1 1101 1101 MGJ MGJ . D 3 ZN A 1 1102 1102 ZN ZN . E 2 MGJ B 1 1101 1101 MGJ MGJ . F 3 ZN B 1 1102 1102 ZN ZN . G 4 HOH A 1 1201 1201 HOH HOH . G 4 HOH A 2 1202 1202 HOH HOH . G 4 HOH A 3 1203 1203 HOH HOH . G 4 HOH A 4 1204 1204 HOH HOH . G 4 HOH A 5 1205 1205 HOH HOH . G 4 HOH A 6 1206 1206 HOH HOH . G 4 HOH A 7 1207 1207 HOH HOH . G 4 HOH A 8 1208 1208 HOH HOH . G 4 HOH A 9 1209 1209 HOH HOH . G 4 HOH A 10 1210 1210 HOH HOH . G 4 HOH A 11 1211 1211 HOH HOH . G 4 HOH A 12 1212 1212 HOH HOH . G 4 HOH A 13 1213 1213 HOH HOH . G 4 HOH A 14 1214 1214 HOH HOH . G 4 HOH A 15 1215 1215 HOH HOH . G 4 HOH A 16 1216 1216 HOH HOH . G 4 HOH A 17 1217 1217 HOH HOH . G 4 HOH A 18 1218 1218 HOH HOH . G 4 HOH A 19 1219 1219 HOH HOH . G 4 HOH A 20 1220 1220 HOH HOH . G 4 HOH A 21 1221 1221 HOH HOH . G 4 HOH A 22 1222 1222 HOH HOH . G 4 HOH A 23 1223 1223 HOH HOH . G 4 HOH A 24 1224 1224 HOH HOH . G 4 HOH A 25 1225 1225 HOH HOH . G 4 HOH A 26 1226 1226 HOH HOH . G 4 HOH A 27 1227 1227 HOH HOH . G 4 HOH A 28 1228 1228 HOH HOH . G 4 HOH A 29 1229 1229 HOH HOH . G 4 HOH A 30 1230 1230 HOH HOH . G 4 HOH A 31 1231 1231 HOH HOH . G 4 HOH A 32 1232 1232 HOH HOH . G 4 HOH A 33 1233 1233 HOH HOH . G 4 HOH A 34 1234 1234 HOH HOH . G 4 HOH A 35 1235 1235 HOH HOH . G 4 HOH A 36 1236 1236 HOH HOH . G 4 HOH A 37 1237 1237 HOH HOH . G 4 HOH A 38 1238 1238 HOH HOH . G 4 HOH A 39 1239 1239 HOH HOH . G 4 HOH A 40 1240 1240 HOH HOH . G 4 HOH A 41 1241 1241 HOH HOH . G 4 HOH A 42 1242 1242 HOH HOH . G 4 HOH A 43 1243 1243 HOH HOH . G 4 HOH A 44 1244 1244 HOH HOH . H 4 HOH B 1 1201 1201 HOH HOH . H 4 HOH B 2 1202 1202 HOH HOH . H 4 HOH B 3 1203 1203 HOH HOH . H 4 HOH B 4 1204 1204 HOH HOH . H 4 HOH B 5 1205 1205 HOH HOH . H 4 HOH B 6 1206 1206 HOH HOH . H 4 HOH B 7 1207 1207 HOH HOH . H 4 HOH B 8 1208 1208 HOH HOH . H 4 HOH B 9 1209 1209 HOH HOH . H 4 HOH B 10 1210 1210 HOH HOH . H 4 HOH B 11 1211 1211 HOH HOH . H 4 HOH B 12 1212 1212 HOH HOH . H 4 HOH B 13 1213 1213 HOH HOH . H 4 HOH B 14 1214 1214 HOH HOH . H 4 HOH B 15 1215 1215 HOH HOH . H 4 HOH B 16 1216 1216 HOH HOH . H 4 HOH B 17 1217 1217 HOH HOH . H 4 HOH B 18 1218 1218 HOH HOH . H 4 HOH B 19 1219 1219 HOH HOH . H 4 HOH B 20 1220 1220 HOH HOH . H 4 HOH B 21 1221 1221 HOH HOH . H 4 HOH B 22 1222 1222 HOH HOH . H 4 HOH B 23 1223 1223 HOH HOH . H 4 HOH B 24 1224 1224 HOH HOH . H 4 HOH B 25 1225 1225 HOH HOH . H 4 HOH B 26 1226 1226 HOH HOH . H 4 HOH B 27 1227 1227 HOH HOH . H 4 HOH B 28 1228 1228 HOH HOH . H 4 HOH B 29 1229 1229 HOH HOH . H 4 HOH B 30 1230 1230 HOH HOH . H 4 HOH B 31 1231 1231 HOH HOH . H 4 HOH B 32 1232 1232 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 MGJ . . . E 2 -116.981 3.774 -15.038 1 70.76 ? C10 MGJ 1101 B 1 HETATM 2 N N12 MGJ . . . E 2 -115.791 7.73 -18.075 1 74.29 ? N12 MGJ 1101 B 1 HETATM 3 C C13 MGJ . . . E 2 -115.323 7.035 -19.236 1 75.55 ? C13 MGJ 1101 B 1 HETATM 4 C C15 MGJ . . . E 2 -115.824 7.5 -20.551 1 77.22 ? C15 MGJ 1101 B 1 HETATM 5 C C17 MGJ . . . E 2 -114.974 6.714 -22.496 1 83.95 ? C17 MGJ 1101 B 1 HETATM 6 C C20 MGJ . . . E 2 -115.888 4.586 -24.846 1 98.92 ? C20 MGJ 1101 B 1 HETATM 7 C C21 MGJ . . . E 2 -116.17 3.938 -26.036 1 99.82 ? C21 MGJ 1101 B 1 HETATM 8 C C22 MGJ . . . E 2 -116.115 2.553 -26.111 1 100.31 ? C22 MGJ 1101 B 1 HETATM 9 C C24 MGJ . . . E 2 -115.509 2.444 -23.801 1 100.13 ? C24 MGJ 1101 B 1 HETATM 10 C C26 MGJ . . . E 2 -113.539 7.552 -20.817 1 80.03 ? C26 MGJ 1101 B 1 HETATM 11 O O04 MGJ . . . E 2 -113.885 8.352 -15.247 1 73.43 ? O04 MGJ 1101 B 1 HETATM 12 C C03 MGJ . . . E 2 -114.518 8.462 -16.277 1 74.08 ? C03 MGJ 1101 B 1 HETATM 13 N N02 MGJ . . . E 2 -114.485 9.709 -17.004 1 76.09 ? N02 MGJ 1101 B 1 HETATM 14 C C01 MGJ . . . E 2 -113.673 10.805 -16.503 1 75.75 ? C01 MGJ 1101 B 1 HETATM 15 C C05 MGJ . . . E 2 -115.358 7.336 -16.776 1 73.33 ? C05 MGJ 1101 B 1 HETATM 16 C C06 MGJ . . . E 2 -114.698 5.984 -16.829 1 73.18 ? C06 MGJ 1101 B 1 HETATM 17 C C07 MGJ . . . E 2 -115.442 4.874 -16.065 1 73.46 ? C07 MGJ 1101 B 1 HETATM 18 C C08 MGJ . . . E 2 -114.937 3.665 -15.623 1 71.72 ? C08 MGJ 1101 B 1 HETATM 19 N N09 MGJ . . . E 2 -115.906 3.011 -14.996 1 69.75 ? N09 MGJ 1101 B 1 HETATM 20 N N11 MGJ . . . E 2 -116.713 4.896 -15.689 1 72.37 ? N11 MGJ 1101 B 1 HETATM 21 O O14 MGJ . . . E 2 -114.555 6.113 -19.121 1 74.55 ? O14 MGJ 1101 B 1 HETATM 22 N N16 MGJ . . . E 2 -114.807 7.757 -21.492 1 80.26 ? N16 MGJ 1101 B 1 HETATM 23 C C27 MGJ . . . E 2 -112.435 6.904 -21.6 1 79.84 ? C27 MGJ 1101 B 1 HETATM 24 O O28 MGJ . . . E 2 -112.317 5.668 -21.603 1 79.56 ? O28 MGJ 1101 B 1 HETATM 25 O O29 MGJ . . . E 2 -111.616 7.579 -22.262 1 79.15 ? O29 MGJ 1101 B 1 HETATM 26 C C18 MGJ . . . E 2 -116.142 6.824 -23.428 1 89.08 ? C18 MGJ 1101 B 1 HETATM 27 C C19 MGJ . . . E 2 -115.94 6.129 -24.774 1 95.18 ? C19 MGJ 1101 B 1 HETATM 28 C C23 MGJ . . . E 2 -115.786 1.808 -24.988 1 100.47 ? C23 MGJ 1101 B 1 HETATM 29 C C25 MGJ . . . E 2 -115.558 3.826 -23.73 1 99.91 ? C25 MGJ 1101 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 29 #