data_4GS9 # _model_server_result.job_id jKflNFq3t6L6I59Vv6e8gQ _model_server_result.datetime_utc '2025-08-31 16:08:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gs9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 4GS9 # _exptl.entry_id 4GS9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 370.436 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.78 _cell.angle_gamma 90 _cell.entry_id 4GS9 _cell.length_a 72.745 _cell.length_b 83.054 _cell.length_c 41.075 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GS9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H34 O9' _chem_comp.formula_weight 370.436 _chem_comp.id PE8 _chem_comp.mon_nstd_flag . _chem_comp.name 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 PE8 sing 266 n n O1 HO1 PE8 sing 267 n n C2 C3 PE8 sing 268 n n C2 H21 PE8 sing 269 n n C2 H22 PE8 sing 270 n n C3 O4 PE8 sing 271 n n C3 H31 PE8 sing 272 n n C3 H32 PE8 sing 273 n n O4 C5 PE8 sing 274 n n C5 C6 PE8 sing 275 n n C5 H51 PE8 sing 276 n n C5 H52 PE8 sing 277 n n C6 O7 PE8 sing 278 n n C6 H61 PE8 sing 279 n n C6 H62 PE8 sing 280 n n O7 C8 PE8 sing 281 n n C8 C9 PE8 sing 282 n n C8 H81 PE8 sing 283 n n C8 H82 PE8 sing 284 n n C9 O10 PE8 sing 285 n n C9 H91 PE8 sing 286 n n C9 H92 PE8 sing 287 n n O10 C11 PE8 sing 288 n n C11 C12 PE8 sing 289 n n C11 H111 PE8 sing 290 n n C11 H112 PE8 sing 291 n n C12 O13 PE8 sing 292 n n C12 H121 PE8 sing 293 n n C12 H122 PE8 sing 294 n n O13 C14 PE8 sing 295 n n C14 C15 PE8 sing 296 n n C14 H141 PE8 sing 297 n n C14 H142 PE8 sing 298 n n C15 O16 PE8 sing 299 n n C15 H151 PE8 sing 300 n n C15 H152 PE8 sing 301 n n O16 C17 PE8 sing 302 n n C17 C18 PE8 sing 303 n n C17 H171 PE8 sing 304 n n C17 H172 PE8 sing 305 n n C18 O19 PE8 sing 306 n n C18 H181 PE8 sing 307 n n C18 H182 PE8 sing 308 n n O19 C20 PE8 sing 309 n n C20 C21 PE8 sing 310 n n C20 H201 PE8 sing 311 n n C20 H202 PE8 sing 312 n n C21 O22 PE8 sing 313 n n C21 H211 PE8 sing 314 n n C21 H212 PE8 sing 315 n n O22 C23 PE8 sing 316 n n C23 C24 PE8 sing 317 n n C23 H231 PE8 sing 318 n n C23 H232 PE8 sing 319 n n C24 O25 PE8 sing 320 n n C24 H241 PE8 sing 321 n n C24 H242 PE8 sing 322 n n O25 H25 PE8 sing 323 n n # _atom_sites.entry_id 4GS9 _atom_sites.fract_transf_matrix[1][1] 0.013747 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003885 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01204 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025299 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 0XB A 1 401 1 0XB 0XB . D 4 PE8 A 1 402 1 PE8 PE8 . E 5 HOH A 1 501 3 HOH HOH . E 5 HOH A 2 502 6 HOH HOH . E 5 HOH A 3 503 8 HOH HOH . E 5 HOH A 4 504 9 HOH HOH . E 5 HOH A 5 505 11 HOH HOH . E 5 HOH A 6 506 16 HOH HOH . E 5 HOH A 7 507 17 HOH HOH . E 5 HOH A 8 508 20 HOH HOH . E 5 HOH A 9 509 22 HOH HOH . E 5 HOH A 10 510 25 HOH HOH . E 5 HOH A 11 511 26 HOH HOH . E 5 HOH A 12 512 27 HOH HOH . E 5 HOH A 13 513 30 HOH HOH . E 5 HOH A 14 514 32 HOH HOH . E 5 HOH A 15 515 35 HOH HOH . E 5 HOH A 16 516 39 HOH HOH . E 5 HOH A 17 517 42 HOH HOH . E 5 HOH A 18 518 43 HOH HOH . E 5 HOH A 19 519 47 HOH HOH . E 5 HOH A 20 520 54 HOH HOH . E 5 HOH A 21 521 62 HOH HOH . E 5 HOH A 22 522 64 HOH HOH . E 5 HOH A 23 523 67 HOH HOH . E 5 HOH A 24 524 74 HOH HOH . E 5 HOH A 25 525 84 HOH HOH . E 5 HOH A 26 526 88 HOH HOH . E 5 HOH A 27 527 90 HOH HOH . E 5 HOH A 28 528 91 HOH HOH . E 5 HOH A 29 529 96 HOH HOH . E 5 HOH A 30 530 97 HOH HOH . E 5 HOH A 31 531 100 HOH HOH . E 5 HOH A 32 532 103 HOH HOH . E 5 HOH A 33 533 104 HOH HOH . E 5 HOH A 34 534 105 HOH HOH . E 5 HOH A 35 535 113 HOH HOH . E 5 HOH A 36 536 114 HOH HOH . E 5 HOH A 37 537 115 HOH HOH . E 5 HOH A 38 538 122 HOH HOH . E 5 HOH A 39 539 123 HOH HOH . E 5 HOH A 40 540 89 HOH HOH . F 5 HOH B 1 501 55 HOH HOH . F 5 HOH B 2 502 92 HOH HOH . F 5 HOH B 3 503 99 HOH HOH . F 5 HOH B 4 504 125 HOH HOH . F 5 HOH B 5 505 1 HOH HOH . F 5 HOH B 6 506 2 HOH HOH . F 5 HOH B 7 507 4 HOH HOH . F 5 HOH B 8 508 5 HOH HOH . F 5 HOH B 9 509 7 HOH HOH . F 5 HOH B 10 510 10 HOH HOH . F 5 HOH B 11 511 12 HOH HOH . F 5 HOH B 12 512 13 HOH HOH . F 5 HOH B 13 513 14 HOH HOH . F 5 HOH B 14 514 15 HOH HOH . F 5 HOH B 15 515 18 HOH HOH . F 5 HOH B 16 516 19 HOH HOH . F 5 HOH B 17 517 21 HOH HOH . F 5 HOH B 18 518 23 HOH HOH . F 5 HOH B 19 519 24 HOH HOH . F 5 HOH B 20 520 28 HOH HOH . F 5 HOH B 21 521 29 HOH HOH . F 5 HOH B 22 522 31 HOH HOH . F 5 HOH B 23 523 33 HOH HOH . F 5 HOH B 24 524 34 HOH HOH . F 5 HOH B 25 525 36 HOH HOH . F 5 HOH B 26 526 37 HOH HOH . F 5 HOH B 27 527 38 HOH HOH . F 5 HOH B 28 528 40 HOH HOH . F 5 HOH B 29 529 41 HOH HOH . F 5 HOH B 30 530 44 HOH HOH . F 5 HOH B 31 531 45 HOH HOH . F 5 HOH B 32 532 46 HOH HOH . F 5 HOH B 33 533 48 HOH HOH . F 5 HOH B 34 534 49 HOH HOH . F 5 HOH B 35 535 50 HOH HOH . F 5 HOH B 36 536 51 HOH HOH . F 5 HOH B 37 537 52 HOH HOH . F 5 HOH B 38 538 53 HOH HOH . F 5 HOH B 39 539 56 HOH HOH . F 5 HOH B 40 540 57 HOH HOH . F 5 HOH B 41 541 58 HOH HOH . F 5 HOH B 42 542 59 HOH HOH . F 5 HOH B 43 543 60 HOH HOH . F 5 HOH B 44 544 61 HOH HOH . F 5 HOH B 45 545 63 HOH HOH . F 5 HOH B 46 546 65 HOH HOH . F 5 HOH B 47 547 66 HOH HOH . F 5 HOH B 48 548 68 HOH HOH . F 5 HOH B 49 549 69 HOH HOH . F 5 HOH B 50 550 70 HOH HOH . F 5 HOH B 51 551 71 HOH HOH . F 5 HOH B 52 552 72 HOH HOH . F 5 HOH B 53 553 73 HOH HOH . F 5 HOH B 54 554 75 HOH HOH . F 5 HOH B 55 555 76 HOH HOH . F 5 HOH B 56 556 77 HOH HOH . F 5 HOH B 57 557 78 HOH HOH . F 5 HOH B 58 558 79 HOH HOH . F 5 HOH B 59 559 80 HOH HOH . F 5 HOH B 60 560 81 HOH HOH . F 5 HOH B 61 561 82 HOH HOH . F 5 HOH B 62 562 83 HOH HOH . F 5 HOH B 63 563 85 HOH HOH . F 5 HOH B 64 564 86 HOH HOH . F 5 HOH B 65 565 87 HOH HOH . F 5 HOH B 66 566 93 HOH HOH . F 5 HOH B 67 567 94 HOH HOH . F 5 HOH B 68 568 95 HOH HOH . F 5 HOH B 69 569 98 HOH HOH . F 5 HOH B 70 570 101 HOH HOH . F 5 HOH B 71 571 102 HOH HOH . F 5 HOH B 72 572 106 HOH HOH . F 5 HOH B 73 573 107 HOH HOH . F 5 HOH B 74 574 108 HOH HOH . F 5 HOH B 75 575 109 HOH HOH . F 5 HOH B 76 576 112 HOH HOH . F 5 HOH B 77 577 116 HOH HOH . F 5 HOH B 78 578 120 HOH HOH . F 5 HOH B 79 579 121 HOH HOH . F 5 HOH B 80 580 124 HOH HOH . F 5 HOH B 81 581 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PE8 . . . D 4 6.77 -31.195 17.617 0.81 58.73 ? O1 PE8 402 A 1 HETATM 2 C C2 PE8 . . . D 4 6.857 -31.769 16.362 0.81 62.2 ? C2 PE8 402 A 1 HETATM 3 C C3 PE8 . . . D 4 8.223 -32.012 15.811 0.81 60.01 ? C3 PE8 402 A 1 HETATM 4 O O4 PE8 . . . D 4 8.394 -32.052 14.438 0.81 56.5 ? O4 PE8 402 A 1 HETATM 5 C C5 PE8 . . . D 4 9.666 -31.842 13.945 0.81 48.86 ? C5 PE8 402 A 1 HETATM 6 C C6 PE8 . . . D 4 9.823 -31.029 12.705 0.81 48.4 ? C6 PE8 402 A 1 HETATM 7 O O7 PE8 . . . D 4 11.077 -30.722 12.209 0.81 49.59 ? O7 PE8 402 A 1 HETATM 8 C C8 PE8 . . . D 4 11.217 -29.588 11.427 0.81 46.29 ? C8 PE8 402 A 1 HETATM 9 C C9 PE8 . . . D 4 10.615 -29.589 10.06 0.81 48.56 ? C9 PE8 402 A 1 HETATM 10 O O10 PE8 . . . D 4 10.481 -28.388 9.385 0.81 54.19 ? O10 PE8 402 A 1 HETATM 11 C C11 PE8 . . . D 4 9.488 -27.491 9.75 0.81 42.94 ? C11 PE8 402 A 1 HETATM 12 C C12 PE8 . . . D 4 8.5 -27.009 8.726 0.81 46.63 ? C12 PE8 402 A 1 HETATM 13 O O13 PE8 . . . D 4 7.249 -27.604 8.669 0.81 48.06 ? O13 PE8 402 A 1 HETATM 14 C C14 PE8 . . . D 4 6.389 -27.507 9.751 0.81 42.06 ? C14 PE8 402 A 1 HETATM 15 C C15 PE8 . . . D 4 5.392 -28.599 10.014 0.81 49.3 ? C15 PE8 402 A 1 HETATM 16 O O16 PE8 . . . D 4 4.856 -28.734 11.287 0.81 56.02 ? O16 PE8 402 A 1 HETATM 17 C C17 PE8 . . . D 4 5.222 -29.82 12.071 0.81 57.57 ? C17 PE8 402 A 1 HETATM 18 C C18 PE8 . . . D 4 4.555 -31.147 11.928 0.81 61.85 ? C18 PE8 402 A 1 HETATM 19 O O19 PE8 . . . D 4 5.153 -32.189 12.61 0.81 61.59 ? O19 PE8 402 A 1 HETATM 20 C C20 PE8 . . . D 4 4.553 -33.428 12.721 0.81 57.22 ? C20 PE8 402 A 1 HETATM 21 C C21 PE8 . . . D 4 3.67 -33.68 13.9 0.81 51.81 ? C21 PE8 402 A 1 HETATM 22 O O22 PE8 . . . D 4 2.41 -34.206 13.692 0.81 44.52 ? O22 PE8 402 A 1 HETATM 23 C C23 PE8 . . . D 4 1.674 -33.8 12.6 0.81 41.23 ? C23 PE8 402 A 1 HETATM 24 C C24 PE8 . . . D 4 0.209 -34.088 12.577 0.81 49.74 ? C24 PE8 402 A 1 HETATM 25 O O25 PE8 . . . D 4 -0.486 -33.722 11.439 0.81 49.16 ? O25 PE8 402 A 1 HETATM 26 H HO1 PE8 . . . D 4 6.031 -31.476 18.02 0.81 70.47 ? HO1 PE8 402 A 1 HETATM 27 H H21 PE8 . . . D 4 6.381 -32.617 16.379 0.81 74.64 ? H21 PE8 402 A 1 HETATM 28 H H22 PE8 . . . D 4 6.395 -31.177 15.743 0.81 74.64 ? H22 PE8 402 A 1 HETATM 29 H H31 PE8 . . . D 4 8.789 -31.293 16.141 0.81 72.02 ? H31 PE8 402 A 1 HETATM 30 H H32 PE8 . . . D 4 8.556 -32.846 16.185 0.81 72.02 ? H32 PE8 402 A 1 HETATM 31 H H51 PE8 . . . D 4 10.168 -31.387 14.643 0.81 58.64 ? H51 PE8 402 A 1 HETATM 32 H H52 PE8 . . . D 4 10.081 -32.71 13.798 0.81 58.64 ? H52 PE8 402 A 1 HETATM 33 H H61 PE8 . . . D 4 9.377 -30.181 12.872 0.81 58.08 ? H61 PE8 402 A 1 HETATM 34 H H62 PE8 . . . D 4 9.332 -31.481 11.996 0.81 58.08 ? H62 PE8 402 A 1 HETATM 35 H H81 PE8 . . . D 4 12.159 -29.354 11.365 0.81 55.55 ? H81 PE8 402 A 1 HETATM 36 H H82 PE8 . . . D 4 10.767 -28.876 11.913 0.81 55.55 ? H82 PE8 402 A 1 HETATM 37 H H91 PE8 . . . D 4 9.718 -29.956 10.145 0.81 58.27 ? H91 PE8 402 A 1 HETATM 38 H H92 PE8 . . . D 4 11.132 -30.2 9.505 0.81 58.27 ? H92 PE8 402 A 1 HETATM 39 H H111 PE8 . . . D 4 8.992 -27.878 10.493 0.81 51.53 ? H111 PE8 402 A 1 HETATM 40 H H112 PE8 . . . D 4 9.945 -26.703 10.091 0.81 51.53 ? H112 PE8 402 A 1 HETATM 41 H H121 PE8 . . . D 4 8.913 -27.08 7.848 0.81 55.95 ? H121 PE8 402 A 1 HETATM 42 H H122 PE8 . . . D 4 8.349 -26.065 8.907 0.81 55.95 ? H122 PE8 402 A 1 HETATM 43 H H141 PE8 . . . D 4 6.948 -27.433 10.544 0.81 50.47 ? H141 PE8 402 A 1 HETATM 44 H H142 PE8 . . . D 4 5.901 -26.669 9.671 0.81 50.47 ? H142 PE8 402 A 1 HETATM 45 H H151 PE8 . . . D 4 5.85 -29.437 9.828 0.81 59.16 ? H151 PE8 402 A 1 HETATM 46 H H152 PE8 . . . D 4 4.665 -28.512 9.374 0.81 59.16 ? H152 PE8 402 A 1 HETATM 47 H H171 PE8 . . . D 4 5.128 -29.553 13.002 0.81 69.08 ? H171 PE8 402 A 1 HETATM 48 H H172 PE8 . . . D 4 6.171 -29.963 11.911 0.81 69.08 ? H172 PE8 402 A 1 HETATM 49 H H181 PE8 . . . D 4 3.639 -31.058 12.241 0.81 74.22 ? H181 PE8 402 A 1 HETATM 50 H H182 PE8 . . . D 4 4.527 -31.375 10.982 0.81 74.22 ? H182 PE8 402 A 1 HETATM 51 H H201 PE8 . . . D 4 4.051 -33.61 11.908 0.81 68.67 ? H201 PE8 402 A 1 HETATM 52 H H202 PE8 . . . D 4 5.276 -34.077 12.772 0.81 68.67 ? H202 PE8 402 A 1 HETATM 53 H H211 PE8 . . . D 4 4.145 -34.272 14.508 0.81 62.17 ? H211 PE8 402 A 1 HETATM 54 H H212 PE8 . . . D 4 3.549 -32.827 14.353 0.81 62.17 ? H212 PE8 402 A 1 HETATM 55 H H231 PE8 . . . D 4 1.785 -32.838 12.511 0.81 49.47 ? H231 PE8 402 A 1 HETATM 56 H H232 PE8 . . . D 4 2.066 -34.219 11.814 0.81 49.47 ? H232 PE8 402 A 1 HETATM 57 H H241 PE8 . . . D 4 0.093 -35.046 12.699 0.81 59.69 ? H241 PE8 402 A 1 HETATM 58 H H242 PE8 . . . D 4 -0.198 -33.636 13.337 0.81 59.69 ? H242 PE8 402 A 1 HETATM 59 H H25 PE8 . . . D 4 -1.301 -34.071 11.466 0.81 58.99 ? H25 PE8 402 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 385 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 59 #