data_4GSZ # _model_server_result.job_id BoNFDpbKEn3OYi9q5Ekuag _model_server_result.datetime_utc '2024-11-26 11:18:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gsz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":403}' # _entry.id 4GSZ # _exptl.entry_id 4GSZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 191.998 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2(S)-AMINO-6-BORONOHEXANOIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4GSZ _cell.length_a 91.121 _cell.length_b 91.121 _cell.length_c 69.772 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GSZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 143 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,N 1 1,2,3 B,I,J,K,L,M,O 2 1,4,5 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 45.5605 -78.913101 0 3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 91.121 0 0 4 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 5 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 101 A HIS 101 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc2 A ND1 HIS 115 A HIS 115 1_555 H ZN ZN . A ZN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc3 A OD1 ASP 117 A ASP 117 1_555 H ZN ZN . A ZN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.581 ? metalc ? metalc4 A OD2 ASP 124 A ASP 124 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc5 A OD1 ASP 124 A ASP 124 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc6 A ND1 HIS 126 A HIS 126 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc7 A OD1 ASP 128 A ASP 128 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc8 A ND1 HIS 141 A HIS 141 1_555 F ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc9 A OD2 ASP 232 A ASP 232 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc10 A OD2 ASP 232 A ASP 232 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? metalc ? metalc11 A OD2 ASP 234 A ASP 234 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc12 A OD1 ASP 234 A ASP 234 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? metalc ? metalc13 A OE1 GLU 277 A GLU 277 1_555 F ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc14 D ZN ZN . A ZN 402 1_555 G O1 ABH . A ABH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc15 D ZN ZN . A ZN 402 1_555 G O2 ABH . A ABH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc16 E ZN ZN . A ZN 403 1_555 G O1 ABH . A ABH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc17 F ZN ZN . A ZN 404 1_555 G O3 ABH . A ABH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc18 F ZN ZN . A ZN 404 1_555 G O2 ABH . A ABH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc19 F ZN ZN . A ZN 404 1_555 N O HOH . A HOH 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc20 B ND1 HIS 101 B HIS 101 1_555 I ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc21 B ND1 HIS 115 B HIS 115 1_555 M ZN ZN . B ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc22 B OD2 ASP 124 B ASP 124 1_555 I ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc23 B OD1 ASP 124 B ASP 124 1_555 J ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc24 B ND1 HIS 126 B HIS 126 1_555 J ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc25 B OD1 ASP 128 B ASP 128 1_555 I ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc26 B ND1 HIS 141 B HIS 141 1_555 L ZN ZN . B ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc27 B OD2 ASP 232 B ASP 232 1_555 I ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc28 B OD2 ASP 234 B ASP 234 1_555 J ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc29 B OD1 ASP 234 B ASP 234 1_555 J ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc30 B OE1 GLU 277 B GLU 277 1_555 L ZN ZN . B ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc31 I ZN ZN . B ZN 401 1_555 K O1 ABH . B ABH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc32 I ZN ZN . B ZN 401 1_555 K O2 ABH . B ABH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc33 J ZN ZN . B ZN 402 1_555 K O1 ABH . B ABH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc34 K O3 ABH . B ABH 403 1_555 L ZN ZN . B ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc35 K O2 ABH . B ABH 403 1_555 L ZN ZN . B ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc36 L ZN ZN . B ZN 404 1_555 O O HOH . B HOH 538 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc37 M ZN ZN . B ZN 405 1_555 O O HOH . B HOH 543 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? # _chem_comp.formula 'C6 H15 B N O5 -1' _chem_comp.formula_weight 191.998 _chem_comp.id ABH _chem_comp.mon_nstd_flag . _chem_comp.name '2(S)-AMINO-6-BORONOHEXANOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA ABH sing 1 n n N HN1 ABH sing 2 n n N HN2 ABH sing 3 n n CA C ABH sing 4 n n CA CB ABH sing 5 n n CA HCA ABH sing 6 n n C O ABH doub 7 n n C OT ABH sing 8 n n OT HOT1 ABH sing 9 n n CB CG ABH sing 10 n n CB HCB1 ABH sing 11 n n CB HCB2 ABH sing 12 n n CG CD ABH sing 13 n n CG HCG1 ABH sing 14 n n CG HCG2 ABH sing 15 n n CD CE ABH sing 16 n n CD HCD1 ABH sing 17 n n CD HCD2 ABH sing 18 n n CE B ABH sing 19 n n CE HCE1 ABH sing 20 n n CE HCE2 ABH sing 21 n n B O2 ABH sing 22 n n B O1 ABH sing 23 n n B O3 ABH sing 24 n n O2 HO2 ABH sing 25 n n O1 HO1 ABH sing 26 n n O3 HO3 ABH sing 27 n n # _atom_sites.entry_id 4GSZ _atom_sites.fract_transf_matrix[1][1] 0.010974 _atom_sites.fract_transf_matrix[1][2] 0.006336 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012672 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014332 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 401 450 ZN ZN . D 2 ZN A 1 402 400 ZN ZN . E 2 ZN A 1 403 401 ZN ZN . F 2 ZN A 1 404 402 ZN ZN . G 3 ABH A 1 405 500 ABH AB5 . H 2 ZN A 1 406 600 ZN ZN . I 2 ZN B 1 401 400 ZN ZN . J 2 ZN B 1 402 401 ZN ZN . K 3 ABH B 1 403 500 ABH AB5 . L 2 ZN B 1 404 402 ZN ZN . M 2 ZN B 1 405 600 ZN ZN . N 4 HOH A 1 501 1 HOH HOH . N 4 HOH A 2 502 2 HOH HOH . N 4 HOH A 3 503 3 HOH HOH . N 4 HOH A 4 504 4 HOH HOH . N 4 HOH A 5 505 5 HOH HOH . N 4 HOH A 6 506 11 HOH HOH . N 4 HOH A 7 507 15 HOH HOH . N 4 HOH A 8 508 18 HOH HOH . N 4 HOH A 9 509 20 HOH HOH . N 4 HOH A 10 510 22 HOH HOH . N 4 HOH A 11 511 25 HOH HOH . N 4 HOH A 12 512 26 HOH HOH . N 4 HOH A 13 513 27 HOH HOH . N 4 HOH A 14 514 30 HOH HOH . N 4 HOH A 15 515 31 HOH HOH . N 4 HOH A 16 516 33 HOH HOH . N 4 HOH A 17 517 34 HOH HOH . N 4 HOH A 18 518 37 HOH HOH . N 4 HOH A 19 519 38 HOH HOH . N 4 HOH A 20 520 39 HOH HOH . N 4 HOH A 21 521 41 HOH HOH . N 4 HOH A 22 522 42 HOH HOH . N 4 HOH A 23 523 43 HOH HOH . N 4 HOH A 24 524 44 HOH HOH . N 4 HOH A 25 525 45 HOH HOH . N 4 HOH A 26 526 47 HOH HOH . N 4 HOH A 27 527 48 HOH HOH . N 4 HOH A 28 528 51 HOH HOH . N 4 HOH A 29 529 53 HOH HOH . N 4 HOH A 30 530 56 HOH HOH . N 4 HOH A 31 531 57 HOH HOH . N 4 HOH A 32 532 58 HOH HOH . N 4 HOH A 33 533 60 HOH HOH . N 4 HOH A 34 534 61 HOH HOH . N 4 HOH A 35 535 62 HOH HOH . N 4 HOH A 36 536 63 HOH HOH . N 4 HOH A 37 537 64 HOH HOH . N 4 HOH A 38 538 65 HOH HOH . N 4 HOH A 39 539 66 HOH HOH . N 4 HOH A 40 540 67 HOH HOH . N 4 HOH A 41 541 68 HOH HOH . N 4 HOH A 42 542 69 HOH HOH . N 4 HOH A 43 543 70 HOH HOH . N 4 HOH A 44 544 71 HOH HOH . N 4 HOH A 45 545 72 HOH HOH . N 4 HOH A 46 546 73 HOH HOH . N 4 HOH A 47 547 74 HOH HOH . N 4 HOH A 48 548 75 HOH HOH . N 4 HOH A 49 549 76 HOH HOH . N 4 HOH A 50 550 77 HOH HOH . N 4 HOH A 51 551 78 HOH HOH . N 4 HOH A 52 552 91 HOH HOH . N 4 HOH A 53 553 92 HOH HOH . N 4 HOH A 54 554 93 HOH HOH . N 4 HOH A 55 555 94 HOH HOH . N 4 HOH A 56 556 96 HOH HOH . N 4 HOH A 57 557 99 HOH HOH . N 4 HOH A 58 558 100 HOH HOH . N 4 HOH A 59 559 101 HOH HOH . N 4 HOH A 60 560 102 HOH HOH . N 4 HOH A 61 561 103 HOH HOH . N 4 HOH A 62 562 104 HOH HOH . O 4 HOH B 1 501 6 HOH HOH . O 4 HOH B 2 502 7 HOH HOH . O 4 HOH B 3 503 8 HOH HOH . O 4 HOH B 4 504 9 HOH HOH . O 4 HOH B 5 505 10 HOH HOH . O 4 HOH B 6 506 12 HOH HOH . O 4 HOH B 7 507 13 HOH HOH . O 4 HOH B 8 508 14 HOH HOH . O 4 HOH B 9 509 16 HOH HOH . O 4 HOH B 10 510 17 HOH HOH . O 4 HOH B 11 511 19 HOH HOH . O 4 HOH B 12 512 21 HOH HOH . O 4 HOH B 13 513 23 HOH HOH . O 4 HOH B 14 514 24 HOH HOH . O 4 HOH B 15 515 28 HOH HOH . O 4 HOH B 16 516 29 HOH HOH . O 4 HOH B 17 517 32 HOH HOH . O 4 HOH B 18 518 35 HOH HOH . O 4 HOH B 19 519 36 HOH HOH . O 4 HOH B 20 520 40 HOH HOH . O 4 HOH B 21 521 46 HOH HOH . O 4 HOH B 22 522 49 HOH HOH . O 4 HOH B 23 523 50 HOH HOH . O 4 HOH B 24 524 52 HOH HOH . O 4 HOH B 25 525 54 HOH HOH . O 4 HOH B 26 526 55 HOH HOH . O 4 HOH B 27 527 59 HOH HOH . O 4 HOH B 28 528 79 HOH HOH . O 4 HOH B 29 529 80 HOH HOH . O 4 HOH B 30 530 81 HOH HOH . O 4 HOH B 31 531 82 HOH HOH . O 4 HOH B 32 532 83 HOH HOH . O 4 HOH B 33 533 84 HOH HOH . O 4 HOH B 34 534 85 HOH HOH . O 4 HOH B 35 535 86 HOH HOH . O 4 HOH B 36 536 87 HOH HOH . O 4 HOH B 37 537 88 HOH HOH . O 4 HOH B 38 538 89 HOH HOH . O 4 HOH B 39 539 90 HOH HOH . O 4 HOH B 40 540 95 HOH HOH . O 4 HOH B 41 541 97 HOH HOH . O 4 HOH B 42 542 98 HOH HOH . O 4 HOH B 43 543 105 HOH HOH . O 4 HOH B 44 544 106 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N ABH . . . K 3 22.509 -11.594 -32.857 1 48.53 ? N ABH 403 B 1 HETATM 2 C CA ABH . . . K 3 22.674 -11.987 -31.446 1 47.65 ? CA ABH 403 B 1 HETATM 3 C C ABH . . . K 3 23.761 -13.051 -31.298 1 48.6 ? C ABH 403 B 1 HETATM 4 O O ABH . . . K 3 24.247 -13.579 -32.277 1 48.16 ? O ABH 403 B 1 HETATM 5 O OT ABH . . . K 3 24.19 -13.4 -30.072 1 48.5 ? OT ABH 403 B 1 HETATM 6 C CB ABH . . . K 3 21.328 -12.438 -30.815 1 44.94 ? CB ABH 403 B 1 HETATM 7 C CG ABH . . . K 3 20.626 -13.523 -31.653 1 41.85 ? CG ABH 403 B 1 HETATM 8 C CD ABH . . . K 3 19.244 -13.827 -31.058 1 40.56 ? CD ABH 403 B 1 HETATM 9 C CE ABH . . . K 3 18.92 -15.321 -31.248 1 40.64 ? CE ABH 403 B 1 HETATM 10 B B ABH . . . K 3 17.351 -15.561 -31.512 1 40.15 ? B ABH 403 B 1 HETATM 11 O O2 ABH . . . K 3 17.099 -16.902 -31.57 1 40.5 ? O2 ABH 403 B 1 HETATM 12 O O1 ABH . . . K 3 17.011 -14.986 -32.699 1 39.51 ? O1 ABH 403 B 1 HETATM 13 O O3 ABH . . . K 3 16.601 -15.02 -30.503 1 40.15 ? O3 ABH 403 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 421 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 13 #