data_4GT9 # _model_server_result.job_id 1W7R_eTrxZtDs0xksRnCCg _model_server_result.datetime_utc '2024-11-27 20:19:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gt9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 4GT9 # _exptl.entry_id 4GT9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 457.44 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-({4-[(6aR)-3-amino-1-oxo-1,2,5,6,6a,7-hexahydroimidazo[1,5-f]pteridin-8(9H)-yl]phenyl}carbonyl)-L-glutamic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4GT9 _cell.length_a 110.32 _cell.length_b 110.32 _cell.length_c 120.57 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GT9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_455 y-1/2,x+1/2,-z+1/2 0 1 0 1 0 0 0 0 -1 -55.16 55.16 60.285 3 'crystal symmetry operation' 10_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -110.32 0 0 4 'crystal symmetry operation' 16_445 -y-1/2,-x-1/2,-z+1/2 0 -1 0 -1 0 0 0 0 -1 -55.16 -55.16 60.285 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # _chem_comp.formula 'C20 H23 N7 O6' _chem_comp.formula_weight 457.44 _chem_comp.id MEF _chem_comp.mon_nstd_flag . _chem_comp.name 'N-({4-[(6aR)-3-amino-1-oxo-1,2,5,6,6a,7-hexahydroimidazo[1,5-f]pteridin-8(9H)-yl]phenyl}carbonyl)-L-glutamic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 5,10-methylene,5,6,7,8-tetrahydrofolate # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OE2 CD MEF doub 309 n n CG CD MEF sing 310 n n CD OE1 MEF sing 311 n n OE1 HOE1 MEF sing 312 n n CB CG MEF sing 313 n n CG HG MEF sing 314 n n CG HGA MEF sing 315 n n CA CB MEF sing 316 n n CB HB MEF sing 317 n n CB HBA MEF sing 318 n n CA N MEF sing 319 n n CA CT MEF sing 320 n n CA HA MEF sing 321 n n O2 CT MEF doub 322 n n CT O1 MEF sing 323 n n O1 HO1 MEF sing 324 n n C N MEF sing 325 n n N HN MEF sing 326 n n O C MEF doub 327 n n C C11 MEF sing 328 n n CM N10 MEF sing 329 n n C9 N10 MEF sing 330 n n C14 N10 MEF sing 331 n n N5 CM MEF sing 332 n n CM HM MEF sing 333 n n CM HMA MEF sing 334 n n C4A N5 MEF sing 335 n n N5 C6 MEF sing 336 n n C6 C9 MEF sing 337 n n C9 H9 MEF sing 338 n n C9 H9A MEF sing 339 n n C7 C6 MEF sing 340 n n C6 H6 MEF sing 341 n n N8 C7 MEF sing 342 n n C7 H7 MEF sing 343 n n C7 H7A MEF sing 344 n n C8A N8 MEF sing 345 n n N8 HN8 MEF sing 346 n n N1 C8A MEF sing 347 n n C8A C4A MEF doub 348 n n C4 C4A MEF sing 349 n n C2 N1 MEF doub 350 n n NA2 C2 MEF sing 351 n n C2 N3 MEF sing 352 n n NA2 HNA2 MEF sing 353 n n NA2 HNAA MEF sing 354 n n N3 C4 MEF sing 355 n n N3 HN3 MEF sing 356 n n C4 O4 MEF doub 357 n n C16 C11 MEF doub 358 n y C11 C12 MEF sing 359 n y C12 C13 MEF doub 360 n y C12 H12 MEF sing 361 n n C14 C13 MEF sing 362 n y C13 H13 MEF sing 363 n n C16 C15 MEF sing 364 n y C16 H16 MEF sing 365 n n C15 C14 MEF doub 366 n y C15 H15 MEF sing 367 n n # _atom_sites.entry_id 4GT9 _atom_sites.fract_transf_matrix[1][1] 0.009065 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009065 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008294 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 301 300 FAD FDD . C 3 UMP A 1 302 303 UMP DDP . D 4 MEF A 1 303 308 MEF MTH . E 4 MEF A 1 304 313 MEF MTH . F 5 PEG A 1 305 320 PEG PEG . G 6 CL A 1 306 1 CL CL . H 7 HOH A 1 401 1 HOH HOH . H 7 HOH A 2 402 2 HOH HOH . H 7 HOH A 3 403 3 HOH HOH . H 7 HOH A 4 404 4 HOH HOH . H 7 HOH A 5 405 5 HOH HOH . H 7 HOH A 6 406 6 HOH HOH . H 7 HOH A 7 407 7 HOH HOH . H 7 HOH A 8 408 8 HOH HOH . H 7 HOH A 9 409 9 HOH HOH . H 7 HOH A 10 410 10 HOH HOH . H 7 HOH A 11 411 11 HOH HOH . H 7 HOH A 12 412 12 HOH HOH . H 7 HOH A 13 413 13 HOH HOH . H 7 HOH A 14 414 14 HOH HOH . H 7 HOH A 15 415 15 HOH HOH . H 7 HOH A 16 416 16 HOH HOH . H 7 HOH A 17 417 17 HOH HOH . H 7 HOH A 18 418 18 HOH HOH . H 7 HOH A 19 419 19 HOH HOH . H 7 HOH A 20 420 20 HOH HOH . H 7 HOH A 21 421 21 HOH HOH . H 7 HOH A 22 422 22 HOH HOH . H 7 HOH A 23 423 23 HOH HOH . H 7 HOH A 24 424 24 HOH HOH . H 7 HOH A 25 425 25 HOH HOH . H 7 HOH A 26 426 26 HOH HOH . H 7 HOH A 27 427 27 HOH HOH . H 7 HOH A 28 428 28 HOH HOH . H 7 HOH A 29 429 29 HOH HOH . H 7 HOH A 30 430 30 HOH HOH . H 7 HOH A 31 431 31 HOH HOH . H 7 HOH A 32 432 32 HOH HOH . H 7 HOH A 33 433 33 HOH HOH . H 7 HOH A 34 434 34 HOH HOH . H 7 HOH A 35 435 35 HOH HOH . H 7 HOH A 36 436 36 HOH HOH . H 7 HOH A 37 437 37 HOH HOH . H 7 HOH A 38 438 38 HOH HOH . H 7 HOH A 39 439 39 HOH HOH . H 7 HOH A 40 440 40 HOH HOH . H 7 HOH A 41 441 41 HOH HOH . H 7 HOH A 42 442 42 HOH HOH . H 7 HOH A 43 443 43 HOH HOH . H 7 HOH A 44 444 44 HOH HOH . H 7 HOH A 45 445 45 HOH HOH . H 7 HOH A 46 446 46 HOH HOH . H 7 HOH A 47 447 47 HOH HOH . H 7 HOH A 48 448 48 HOH HOH . H 7 HOH A 49 449 49 HOH HOH . H 7 HOH A 50 450 50 HOH HOH . H 7 HOH A 51 451 51 HOH HOH . H 7 HOH A 52 452 52 HOH HOH . H 7 HOH A 53 453 53 HOH HOH . H 7 HOH A 54 454 54 HOH HOH . H 7 HOH A 55 455 55 HOH HOH . H 7 HOH A 56 456 56 HOH HOH . H 7 HOH A 57 457 57 HOH HOH . H 7 HOH A 58 458 58 HOH HOH . H 7 HOH A 59 459 59 HOH HOH . H 7 HOH A 60 460 60 HOH HOH . H 7 HOH A 61 461 61 HOH HOH . H 7 HOH A 62 462 62 HOH HOH . H 7 HOH A 63 463 63 HOH HOH . H 7 HOH A 64 464 64 HOH HOH . H 7 HOH A 65 465 65 HOH HOH . H 7 HOH A 66 466 66 HOH HOH . H 7 HOH A 67 467 67 HOH HOH . H 7 HOH A 68 468 68 HOH HOH . H 7 HOH A 69 469 69 HOH HOH . H 7 HOH A 70 470 70 HOH HOH . H 7 HOH A 71 471 71 HOH HOH . H 7 HOH A 72 472 72 HOH HOH . H 7 HOH A 73 473 73 HOH HOH . H 7 HOH A 74 474 74 HOH HOH . H 7 HOH A 75 475 75 HOH HOH . H 7 HOH A 76 476 76 HOH HOH . H 7 HOH A 77 477 77 HOH HOH . H 7 HOH A 78 478 78 HOH HOH . H 7 HOH A 79 479 79 HOH HOH . H 7 HOH A 80 480 80 HOH HOH . H 7 HOH A 81 481 81 HOH HOH . H 7 HOH A 82 482 82 HOH HOH . H 7 HOH A 83 483 83 HOH HOH . H 7 HOH A 84 484 84 HOH HOH . H 7 HOH A 85 485 85 HOH HOH . H 7 HOH A 86 486 86 HOH HOH . H 7 HOH A 87 487 87 HOH HOH . H 7 HOH A 88 488 88 HOH HOH . H 7 HOH A 89 489 89 HOH HOH . H 7 HOH A 90 490 90 HOH HOH . H 7 HOH A 91 491 91 HOH HOH . H 7 HOH A 92 492 92 HOH HOH . H 7 HOH A 93 493 93 HOH HOH . H 7 HOH A 94 494 94 HOH HOH . H 7 HOH A 95 495 95 HOH HOH . H 7 HOH A 96 496 96 HOH HOH . H 7 HOH A 97 497 97 HOH HOH . H 7 HOH A 98 498 98 HOH HOH . H 7 HOH A 99 499 99 HOH HOH . H 7 HOH A 100 500 100 HOH HOH . H 7 HOH A 101 501 101 HOH HOH . H 7 HOH A 102 502 102 HOH HOH . H 7 HOH A 103 503 103 HOH HOH . H 7 HOH A 104 504 104 HOH HOH . H 7 HOH A 105 505 105 HOH HOH . H 7 HOH A 106 506 106 HOH HOH . H 7 HOH A 107 507 107 HOH HOH . H 7 HOH A 108 508 108 HOH HOH . H 7 HOH A 109 509 109 HOH HOH . H 7 HOH A 110 510 110 HOH HOH . H 7 HOH A 111 511 111 HOH HOH . H 7 HOH A 112 512 112 HOH HOH . H 7 HOH A 113 513 113 HOH HOH . H 7 HOH A 114 514 114 HOH HOH . H 7 HOH A 115 515 115 HOH HOH . H 7 HOH A 116 516 116 HOH HOH . H 7 HOH A 117 517 117 HOH HOH . H 7 HOH A 118 518 118 HOH HOH . H 7 HOH A 119 519 119 HOH HOH . H 7 HOH A 120 520 120 HOH HOH . H 7 HOH A 121 521 121 HOH HOH . H 7 HOH A 122 522 122 HOH HOH . H 7 HOH A 123 523 123 HOH HOH . H 7 HOH A 124 524 124 HOH HOH . H 7 HOH A 125 525 125 HOH HOH . H 7 HOH A 126 526 126 HOH HOH . H 7 HOH A 127 527 127 HOH HOH . H 7 HOH A 128 528 128 HOH HOH . H 7 HOH A 129 529 129 HOH HOH . H 7 HOH A 130 530 130 HOH HOH . H 7 HOH A 131 531 131 HOH HOH . H 7 HOH A 132 532 132 HOH HOH . H 7 HOH A 133 533 133 HOH HOH . H 7 HOH A 134 534 134 HOH HOH . H 7 HOH A 135 535 135 HOH HOH . H 7 HOH A 136 536 136 HOH HOH . H 7 HOH A 137 537 137 HOH HOH . H 7 HOH A 138 538 138 HOH HOH . H 7 HOH A 139 539 139 HOH HOH . H 7 HOH A 140 540 140 HOH HOH . H 7 HOH A 141 541 141 HOH HOH . H 7 HOH A 142 542 142 HOH HOH . H 7 HOH A 143 543 143 HOH HOH . H 7 HOH A 144 544 144 HOH HOH . H 7 HOH A 145 545 145 HOH HOH . H 7 HOH A 146 546 146 HOH HOH . H 7 HOH A 147 547 147 HOH HOH . H 7 HOH A 148 548 148 HOH HOH . H 7 HOH A 149 549 149 HOH HOH . H 7 HOH A 150 550 150 HOH HOH . H 7 HOH A 151 551 151 HOH HOH . H 7 HOH A 152 552 152 HOH HOH . H 7 HOH A 153 553 153 HOH HOH . H 7 HOH A 154 554 154 HOH HOH . H 7 HOH A 155 555 155 HOH HOH . H 7 HOH A 156 556 156 HOH HOH . H 7 HOH A 157 557 157 HOH HOH . H 7 HOH A 158 558 158 HOH HOH . H 7 HOH A 159 559 159 HOH HOH . H 7 HOH A 160 560 160 HOH HOH . H 7 HOH A 161 561 161 HOH HOH . H 7 HOH A 162 562 162 HOH HOH . H 7 HOH A 163 563 163 HOH HOH . H 7 HOH A 164 564 164 HOH HOH . H 7 HOH A 165 565 165 HOH HOH . H 7 HOH A 166 566 166 HOH HOH . H 7 HOH A 167 567 167 HOH HOH . H 7 HOH A 168 568 168 HOH HOH . H 7 HOH A 169 569 169 HOH HOH . H 7 HOH A 170 570 170 HOH HOH . H 7 HOH A 171 571 171 HOH HOH . H 7 HOH A 172 572 172 HOH HOH . H 7 HOH A 173 573 173 HOH HOH . H 7 HOH A 174 574 174 HOH HOH . H 7 HOH A 175 575 175 HOH HOH . H 7 HOH A 176 576 176 HOH HOH . H 7 HOH A 177 577 177 HOH HOH . H 7 HOH A 178 578 178 HOH HOH . H 7 HOH A 179 579 179 HOH HOH . H 7 HOH A 180 580 180 HOH HOH . H 7 HOH A 181 581 181 HOH HOH . H 7 HOH A 182 582 182 HOH HOH . H 7 HOH A 183 583 183 HOH HOH . H 7 HOH A 184 584 184 HOH HOH . H 7 HOH A 185 585 185 HOH HOH . H 7 HOH A 186 586 186 HOH HOH . H 7 HOH A 187 587 187 HOH HOH . H 7 HOH A 188 588 188 HOH HOH . H 7 HOH A 189 589 189 HOH HOH . H 7 HOH A 190 590 190 HOH HOH . H 7 HOH A 191 591 191 HOH HOH . H 7 HOH A 192 592 192 HOH HOH . H 7 HOH A 193 593 193 HOH HOH . H 7 HOH A 194 594 194 HOH HOH . H 7 HOH A 195 595 195 HOH HOH . H 7 HOH A 196 596 196 HOH HOH . H 7 HOH A 197 597 197 HOH HOH . H 7 HOH A 198 598 198 HOH HOH . H 7 HOH A 199 599 199 HOH HOH . H 7 HOH A 200 600 200 HOH HOH . H 7 HOH A 201 601 201 HOH HOH . H 7 HOH A 202 602 202 HOH HOH . H 7 HOH A 203 603 203 HOH HOH . H 7 HOH A 204 604 204 HOH HOH . H 7 HOH A 205 605 205 HOH HOH . H 7 HOH A 206 606 206 HOH HOH . H 7 HOH A 207 607 207 HOH HOH . H 7 HOH A 208 608 208 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N MEF . . . E 4 -7.581 -18.524 29.705 1 50.2 ? N MEF 304 A 1 HETATM 2 C C MEF . . . E 4 -6.84 -18.134 28.663 1 49.64 ? C MEF 304 A 1 HETATM 3 O O MEF . . . E 4 -6.134 -18.942 28.07 1 50.59 ? O MEF 304 A 1 HETATM 4 N N10 MEF . . . E 4 -7.738 -12.888 26.446 1 40.8 ? N10 MEF 304 A 1 HETATM 5 C CM MEF . . . E 4 -9.072 -12.261 26.575 1 37.74 ? CM MEF 304 A 1 HETATM 6 N N5 MEF . . . E 4 -8.903 -11.034 25.77 1 36.01 ? N5 MEF 304 A 1 HETATM 7 C C9 MEF . . . E 4 -7.328 -12.666 25.042 1 39.45 ? C9 MEF 304 A 1 HETATM 8 C C6 MEF . . . E 4 -8.18 -11.49 24.559 1 37.73 ? C6 MEF 304 A 1 HETATM 9 C C7 MEF . . . E 4 -9.121 -11.973 23.453 1 36.14 ? C7 MEF 304 A 1 HETATM 10 N N8 MEF . . . E 4 -10.045 -10.873 23.187 1 35.3 ? N8 MEF 304 A 1 HETATM 11 C C8A MEF . . . E 4 -10.659 -10.269 24.241 1 35.58 ? C8A MEF 304 A 1 HETATM 12 C C4A MEF . . . E 4 -10.116 -10.346 25.513 1 35.17 ? C4A MEF 304 A 1 HETATM 13 N N1 MEF . . . E 4 -11.817 -9.583 24.04 1 34.5 ? N1 MEF 304 A 1 HETATM 14 C C2 MEF . . . E 4 -12.465 -8.981 25.056 1 34.33 ? C2 MEF 304 A 1 HETATM 15 N NA2 MEF . . . E 4 -13.628 -8.32 24.829 1 31.8 ? NA2 MEF 304 A 1 HETATM 16 N N3 MEF . . . E 4 -11.958 -9.045 26.31 1 32.42 ? N3 MEF 304 A 1 HETATM 17 C C4 MEF . . . E 4 -10.793 -9.698 26.546 1 34.08 ? C4 MEF 304 A 1 HETATM 18 O O4 MEF . . . E 4 -10.304 -9.712 27.804 1 31.61 ? O4 MEF 304 A 1 HETATM 19 C C11 MEF . . . E 4 -7.06 -16.76 28.069 1 49.21 ? C11 MEF 304 A 1 HETATM 20 C C12 MEF . . . E 4 -8.12 -15.965 28.519 1 47.71 ? C12 MEF 304 A 1 HETATM 21 C C13 MEF . . . E 4 -8.367 -14.699 27.991 1 44.8 ? C13 MEF 304 A 1 HETATM 22 C C16 MEF . . . E 4 -6.222 -16.26 27.075 1 47.75 ? C16 MEF 304 A 1 HETATM 23 C C15 MEF . . . E 4 -6.455 -14.985 26.545 1 46.04 ? C15 MEF 304 A 1 HETATM 24 C C14 MEF . . . E 4 -7.544 -14.196 26.978 1 43.78 ? C14 MEF 304 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 24 #