data_4GTA # _model_server_result.job_id BoiVIbtWln7tFahkRmoknQ _model_server_result.datetime_utc '2024-11-24 03:47:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gta # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 4GTA # _exptl.entry_id 4GTA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 473.439 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-[4-({[(6S)-2-amino-5-formyl-4-oxo-3,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)benzoyl]-L-glutamic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4GTA _cell.length_a 110.3 _cell.length_b 110.3 _cell.length_c 121.03 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GTA _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_455 y-1/2,x+1/2,-z+1/2 0 1 0 1 0 0 0 0 -1 -55.15 55.15 60.515 3 'crystal symmetry operation' 10_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -110.3 0 0 4 'crystal symmetry operation' 16_445 -y-1/2,-x-1/2,-z+1/2 0 -1 0 -1 0 0 0 0 -1 -55.15 -55.15 60.515 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H23 N7 O7' _chem_comp.formula_weight 473.439 _chem_comp.id FFO _chem_comp.mon_nstd_flag . _chem_comp.name 'N-[4-({[(6S)-2-amino-5-formyl-4-oxo-3,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)benzoyl]-L-glutamic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '[6S]-5-FORMYL-TETRAHYDROFOLATE;6S-FOLINIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FFO doub 174 n n N1 C8A FFO sing 175 n n C2 NA2 FFO sing 176 n n C2 N3 FFO sing 177 n n NA2 HN21 FFO sing 178 n n NA2 HN22 FFO sing 179 n n N3 C4 FFO sing 180 n n N3 H22 FFO sing 181 n n C4 O4 FFO doub 182 n n C4 C4A FFO sing 183 n n C4A N5 FFO sing 184 n n C4A C8A FFO doub 185 n n N5 C6 FFO sing 186 n n N5 C5A FFO sing 187 n n C6 C7 FFO sing 188 n n C6 C9 FFO sing 189 n n C6 H6 FFO sing 190 n n C7 N8 FFO sing 191 n n C7 H7 FFO sing 192 n n C7 H23 FFO sing 193 n n N8 C8A FFO sing 194 n n N8 H24 FFO sing 195 n n C9 N10 FFO sing 196 n n C9 H91 FFO sing 197 n n C9 H92 FFO sing 198 n n N10 C14 FFO sing 199 n n N10 HN0 FFO sing 200 n n C11 C12 FFO doub 201 n y C11 C16 FFO sing 202 n y C11 C FFO sing 203 n n C12 C13 FFO sing 204 n y C12 H12 FFO sing 205 n n C13 C14 FFO doub 206 n y C13 H13 FFO sing 207 n n C14 C15 FFO sing 208 n y C15 C16 FFO doub 209 n y C15 H15 FFO sing 210 n n C16 H16 FFO sing 211 n n C O FFO doub 212 n n C N FFO sing 213 n n N CA FFO sing 214 n n N HN FFO sing 215 n n CA CB FFO sing 216 n n CA CT FFO sing 217 n n CA HA FFO sing 218 n n CB CG FFO sing 219 n n CB HB1 FFO sing 220 n n CB HB2 FFO sing 221 n n CG CD FFO sing 222 n n CG HG1 FFO sing 223 n n CG HG2 FFO sing 224 n n CD OE1 FFO doub 225 n n CD OE2 FFO sing 226 n n OE2 HOE2 FFO sing 227 n n CT O1 FFO doub 228 n n CT O2 FFO sing 229 n n O2 HO2 FFO sing 230 n n C5A O5B FFO doub 231 n n C5A H5A FFO sing 232 n n # _atom_sites.entry_id 4GTA _atom_sites.fract_transf_matrix[1][1] 0.009066 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009066 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008262 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 301 300 FAD FDD . C 3 UMP A 1 302 303 UMP DDP . D 4 FFO A 1 303 308 FFO FFN . E 5 CL A 1 304 1 CL CL . F 6 HOH A 1 401 1 HOH HOH . F 6 HOH A 2 402 2 HOH HOH . F 6 HOH A 3 403 3 HOH HOH . F 6 HOH A 4 404 4 HOH HOH . F 6 HOH A 5 405 5 HOH HOH . F 6 HOH A 6 406 6 HOH HOH . F 6 HOH A 7 407 7 HOH HOH . F 6 HOH A 8 408 8 HOH HOH . F 6 HOH A 9 409 9 HOH HOH . F 6 HOH A 10 410 10 HOH HOH . F 6 HOH A 11 411 11 HOH HOH . F 6 HOH A 12 412 12 HOH HOH . F 6 HOH A 13 413 13 HOH HOH . F 6 HOH A 14 414 14 HOH HOH . F 6 HOH A 15 415 15 HOH HOH . F 6 HOH A 16 416 16 HOH HOH . F 6 HOH A 17 417 17 HOH HOH . F 6 HOH A 18 418 18 HOH HOH . F 6 HOH A 19 419 19 HOH HOH . F 6 HOH A 20 420 20 HOH HOH . F 6 HOH A 21 421 21 HOH HOH . F 6 HOH A 22 422 22 HOH HOH . F 6 HOH A 23 423 23 HOH HOH . F 6 HOH A 24 424 24 HOH HOH . F 6 HOH A 25 425 25 HOH HOH . F 6 HOH A 26 426 26 HOH HOH . F 6 HOH A 27 427 27 HOH HOH . F 6 HOH A 28 428 28 HOH HOH . F 6 HOH A 29 429 29 HOH HOH . F 6 HOH A 30 430 30 HOH HOH . F 6 HOH A 31 431 31 HOH HOH . F 6 HOH A 32 432 32 HOH HOH . F 6 HOH A 33 433 33 HOH HOH . F 6 HOH A 34 434 34 HOH HOH . F 6 HOH A 35 435 35 HOH HOH . F 6 HOH A 36 436 36 HOH HOH . F 6 HOH A 37 437 37 HOH HOH . F 6 HOH A 38 438 38 HOH HOH . F 6 HOH A 39 439 39 HOH HOH . F 6 HOH A 40 440 40 HOH HOH . F 6 HOH A 41 441 41 HOH HOH . F 6 HOH A 42 442 42 HOH HOH . F 6 HOH A 43 443 43 HOH HOH . F 6 HOH A 44 444 44 HOH HOH . F 6 HOH A 45 445 45 HOH HOH . F 6 HOH A 46 446 46 HOH HOH . F 6 HOH A 47 447 47 HOH HOH . F 6 HOH A 48 448 48 HOH HOH . F 6 HOH A 49 449 49 HOH HOH . F 6 HOH A 50 450 50 HOH HOH . F 6 HOH A 51 451 51 HOH HOH . F 6 HOH A 52 452 52 HOH HOH . F 6 HOH A 53 453 53 HOH HOH . F 6 HOH A 54 454 54 HOH HOH . F 6 HOH A 55 455 55 HOH HOH . F 6 HOH A 56 456 56 HOH HOH . F 6 HOH A 57 457 57 HOH HOH . F 6 HOH A 58 458 58 HOH HOH . F 6 HOH A 59 459 59 HOH HOH . F 6 HOH A 60 460 60 HOH HOH . F 6 HOH A 61 461 61 HOH HOH . F 6 HOH A 62 462 62 HOH HOH . F 6 HOH A 63 463 63 HOH HOH . F 6 HOH A 64 464 64 HOH HOH . F 6 HOH A 65 465 65 HOH HOH . F 6 HOH A 66 466 66 HOH HOH . F 6 HOH A 67 467 67 HOH HOH . F 6 HOH A 68 468 68 HOH HOH . F 6 HOH A 69 469 69 HOH HOH . F 6 HOH A 70 470 70 HOH HOH . F 6 HOH A 71 471 71 HOH HOH . F 6 HOH A 72 472 72 HOH HOH . F 6 HOH A 73 473 73 HOH HOH . F 6 HOH A 74 474 74 HOH HOH . F 6 HOH A 75 475 75 HOH HOH . F 6 HOH A 76 476 76 HOH HOH . F 6 HOH A 77 477 77 HOH HOH . F 6 HOH A 78 478 78 HOH HOH . F 6 HOH A 79 479 79 HOH HOH . F 6 HOH A 80 480 80 HOH HOH . F 6 HOH A 81 481 81 HOH HOH . F 6 HOH A 82 482 82 HOH HOH . F 6 HOH A 83 483 83 HOH HOH . F 6 HOH A 84 484 84 HOH HOH . F 6 HOH A 85 485 85 HOH HOH . F 6 HOH A 86 486 86 HOH HOH . F 6 HOH A 87 487 87 HOH HOH . F 6 HOH A 88 488 88 HOH HOH . F 6 HOH A 89 489 89 HOH HOH . F 6 HOH A 90 490 90 HOH HOH . F 6 HOH A 91 491 91 HOH HOH . F 6 HOH A 92 492 92 HOH HOH . F 6 HOH A 93 493 93 HOH HOH . F 6 HOH A 94 494 94 HOH HOH . F 6 HOH A 95 495 95 HOH HOH . F 6 HOH A 96 496 96 HOH HOH . F 6 HOH A 97 497 97 HOH HOH . F 6 HOH A 98 498 98 HOH HOH . F 6 HOH A 99 499 99 HOH HOH . F 6 HOH A 100 500 100 HOH HOH . F 6 HOH A 101 501 101 HOH HOH . F 6 HOH A 102 502 102 HOH HOH . F 6 HOH A 103 503 103 HOH HOH . F 6 HOH A 104 504 104 HOH HOH . F 6 HOH A 105 505 105 HOH HOH . F 6 HOH A 106 506 106 HOH HOH . F 6 HOH A 107 507 107 HOH HOH . F 6 HOH A 108 508 108 HOH HOH . F 6 HOH A 109 509 109 HOH HOH . F 6 HOH A 110 510 110 HOH HOH . F 6 HOH A 111 511 111 HOH HOH . F 6 HOH A 112 512 112 HOH HOH . F 6 HOH A 113 513 113 HOH HOH . F 6 HOH A 114 514 114 HOH HOH . F 6 HOH A 115 515 115 HOH HOH . F 6 HOH A 116 516 116 HOH HOH . F 6 HOH A 117 517 117 HOH HOH . F 6 HOH A 118 518 118 HOH HOH . F 6 HOH A 119 519 119 HOH HOH . F 6 HOH A 120 520 120 HOH HOH . F 6 HOH A 121 521 121 HOH HOH . F 6 HOH A 122 522 122 HOH HOH . F 6 HOH A 123 523 123 HOH HOH . F 6 HOH A 124 524 124 HOH HOH . F 6 HOH A 125 525 125 HOH HOH . F 6 HOH A 126 526 126 HOH HOH . F 6 HOH A 127 527 127 HOH HOH . F 6 HOH A 128 528 128 HOH HOH . F 6 HOH A 129 529 129 HOH HOH . F 6 HOH A 130 530 130 HOH HOH . F 6 HOH A 131 531 131 HOH HOH . F 6 HOH A 132 532 132 HOH HOH . F 6 HOH A 133 533 133 HOH HOH . F 6 HOH A 134 534 134 HOH HOH . F 6 HOH A 135 535 135 HOH HOH . F 6 HOH A 136 536 136 HOH HOH . F 6 HOH A 137 537 137 HOH HOH . F 6 HOH A 138 538 138 HOH HOH . F 6 HOH A 139 539 139 HOH HOH . F 6 HOH A 140 540 140 HOH HOH . F 6 HOH A 141 541 141 HOH HOH . F 6 HOH A 142 542 142 HOH HOH . F 6 HOH A 143 543 143 HOH HOH . F 6 HOH A 144 544 144 HOH HOH . F 6 HOH A 145 545 145 HOH HOH . F 6 HOH A 146 546 146 HOH HOH . F 6 HOH A 147 547 147 HOH HOH . F 6 HOH A 148 548 148 HOH HOH . F 6 HOH A 149 549 149 HOH HOH . F 6 HOH A 150 550 150 HOH HOH . F 6 HOH A 151 551 151 HOH HOH . F 6 HOH A 152 552 152 HOH HOH . F 6 HOH A 153 553 153 HOH HOH . F 6 HOH A 154 554 154 HOH HOH . F 6 HOH A 155 555 155 HOH HOH . F 6 HOH A 156 556 156 HOH HOH . F 6 HOH A 157 557 157 HOH HOH . F 6 HOH A 158 558 158 HOH HOH . F 6 HOH A 159 559 159 HOH HOH . F 6 HOH A 160 560 160 HOH HOH . F 6 HOH A 161 561 161 HOH HOH . F 6 HOH A 162 562 162 HOH HOH . F 6 HOH A 163 563 163 HOH HOH . F 6 HOH A 164 564 164 HOH HOH . F 6 HOH A 165 565 165 HOH HOH . F 6 HOH A 166 566 166 HOH HOH . F 6 HOH A 167 567 167 HOH HOH . F 6 HOH A 168 568 168 HOH HOH . F 6 HOH A 169 569 169 HOH HOH . F 6 HOH A 170 570 170 HOH HOH . F 6 HOH A 171 571 171 HOH HOH . F 6 HOH A 172 572 172 HOH HOH . F 6 HOH A 173 573 173 HOH HOH . F 6 HOH A 174 574 174 HOH HOH . F 6 HOH A 175 575 175 HOH HOH . F 6 HOH A 176 576 176 HOH HOH . F 6 HOH A 177 577 177 HOH HOH . F 6 HOH A 178 578 178 HOH HOH . F 6 HOH A 179 579 179 HOH HOH . F 6 HOH A 180 580 180 HOH HOH . F 6 HOH A 181 581 181 HOH HOH . F 6 HOH A 182 582 182 HOH HOH . F 6 HOH A 183 583 183 HOH HOH . F 6 HOH A 184 584 184 HOH HOH . F 6 HOH A 185 585 185 HOH HOH . F 6 HOH A 186 586 186 HOH HOH . F 6 HOH A 187 587 187 HOH HOH . F 6 HOH A 188 588 188 HOH HOH . F 6 HOH A 189 589 189 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FFO . . . D 4 -56.299 -17.354 25.333 0.72 33.29 ? N1 FFO 303 A 1 HETATM 2 C C2 FFO . . . D 4 -56.913 -18.169 26.17 0.72 32.32 ? C2 FFO 303 A 1 HETATM 3 N NA2 FFO . . . D 4 -57.657 -17.617 27.231 0.72 32.69 ? NA2 FFO 303 A 1 HETATM 4 N N3 FFO . . . D 4 -56.861 -19.569 26.019 0.72 33.57 ? N3 FFO 303 A 1 HETATM 5 C C4 FFO . . . D 4 -56.151 -20.133 25.006 0.72 31.87 ? C4 FFO 303 A 1 HETATM 6 O O4 FFO . . . D 4 -56.132 -21.489 24.883 0.72 40.47 ? O4 FFO 303 A 1 HETATM 7 C C4A FFO . . . D 4 -55.451 -19.295 24.103 0.72 32 ? C4A FFO 303 A 1 HETATM 8 N N5 FFO . . . D 4 -54.668 -19.736 22.974 0.72 36.95 ? N5 FFO 303 A 1 HETATM 9 C C6 FFO . . . D 4 -54.548 -18.847 21.891 0.72 33.49 ? C6 FFO 303 A 1 HETATM 10 C C7 FFO . . . D 4 -54.186 -17.379 22.316 0.72 34.1 ? C7 FFO 303 A 1 HETATM 11 N N8 FFO . . . D 4 -54.883 -16.918 23.461 0.72 37.4 ? N8 FFO 303 A 1 HETATM 12 C C8A FFO . . . D 4 -55.551 -17.844 24.301 0.72 34.11 ? C8A FFO 303 A 1 HETATM 13 C C9 FFO . . . D 4 -55.949 -19.011 21.142 0.72 33.95 ? C9 FFO 303 A 1 HETATM 14 N N10 FFO . . . D 4 -56.484 -20.383 21.036 0.72 34.95 ? N10 FFO 303 A 1 HETATM 15 C C11 FFO . . . D 4 -55.867 -22.883 17.68 0.72 40.07 ? C11 FFO 303 A 1 HETATM 16 C C12 FFO . . . D 4 -56.793 -23.238 18.618 0.72 38.93 ? C12 FFO 303 A 1 HETATM 17 C C13 FFO . . . D 4 -56.991 -22.409 19.732 0.72 35.79 ? C13 FFO 303 A 1 HETATM 18 C C14 FFO . . . D 4 -56.263 -21.223 19.883 0.72 36.7 ? C14 FFO 303 A 1 HETATM 19 C C15 FFO . . . D 4 -55.314 -20.868 18.926 0.72 38.27 ? C15 FFO 303 A 1 HETATM 20 C C16 FFO . . . D 4 -55.125 -21.67 17.833 0.72 38.73 ? C16 FFO 303 A 1 HETATM 21 C C FFO . . . D 4 -55.648 -23.714 16.464 0.72 41.16 ? C FFO 303 A 1 HETATM 22 O O FFO . . . D 4 -54.871 -23.308 15.577 0.72 42.3 ? O FFO 303 A 1 HETATM 23 N N FFO . . . D 4 -56.405 -24.955 16.278 0.72 41.92 ? N FFO 303 A 1 HETATM 24 C C5A FFO . . . D 4 -54.137 -21.021 22.814 0.72 35.17 ? C5A FFO 303 A 1 HETATM 25 O O5B FFO . . . D 4 -53.21 -21.157 22.022 0.72 41.28 ? O5B FFO 303 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 511 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #