data_4GTB # _model_server_result.job_id f5_8BZ1TeHywxfdFRMeCOA _model_server_result.datetime_utc '2025-02-17 18:31:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gtb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4GTB # _exptl.entry_id 4GTB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4GTB _cell.length_a 110.57 _cell.length_b 110.57 _cell.length_c 121.73 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GTB _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_455 y-1/2,x+1/2,-z+1/2 0 1 0 1 0 0 0 0 -1 -55.285 55.285 60.865 3 'crystal symmetry operation' 10_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -110.57 0 0 4 'crystal symmetry operation' 16_445 -y-1/2,-x-1/2,-z+1/2 0 -1 0 -1 0 0 0 0 -1 -55.285 -55.285 60.865 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 139 n n PA O2A FAD sing 140 n n PA O5B FAD sing 141 n n PA O3P FAD sing 142 n n O2A HOA2 FAD sing 143 n n O5B C5B FAD sing 144 n n C5B C4B FAD sing 145 n n C5B H51A FAD sing 146 n n C5B H52A FAD sing 147 n n C4B O4B FAD sing 148 n n C4B C3B FAD sing 149 n n C4B H4B FAD sing 150 n n O4B C1B FAD sing 151 n n C3B O3B FAD sing 152 n n C3B C2B FAD sing 153 n n C3B H3B FAD sing 154 n n O3B HO3A FAD sing 155 n n C2B O2B FAD sing 156 n n C2B C1B FAD sing 157 n n C2B H2B FAD sing 158 n n O2B HO2A FAD sing 159 n n C1B N9A FAD sing 160 n n C1B H1B FAD sing 161 n n N9A C8A FAD sing 162 n y N9A C4A FAD sing 163 n y C8A N7A FAD doub 164 n y C8A H8A FAD sing 165 n n N7A C5A FAD sing 166 n y C5A C6A FAD sing 167 n y C5A C4A FAD doub 168 n y C6A N6A FAD sing 169 n n C6A N1A FAD doub 170 n y N6A H61A FAD sing 171 n n N6A H62A FAD sing 172 n n N1A C2A FAD sing 173 n y C2A N3A FAD doub 174 n y C2A H2A FAD sing 175 n n N3A C4A FAD sing 176 n y N1 C2 FAD sing 177 n n N1 C10 FAD doub 178 n n C2 O2 FAD doub 179 n n C2 N3 FAD sing 180 n n N3 C4 FAD sing 181 n n N3 HN3 FAD sing 182 n n C4 O4 FAD doub 183 n n C4 C4X FAD sing 184 n n C4X N5 FAD doub 185 n n C4X C10 FAD sing 186 n n N5 C5X FAD sing 187 n n C5X C6 FAD doub 188 n y C5X C9A FAD sing 189 n y C6 C7 FAD sing 190 n y C6 H6 FAD sing 191 n n C7 C7M FAD sing 192 n n C7 C8 FAD doub 193 n y C7M HM71 FAD sing 194 n n C7M HM72 FAD sing 195 n n C7M HM73 FAD sing 196 n n C8 C8M FAD sing 197 n n C8 C9 FAD sing 198 n y C8M HM81 FAD sing 199 n n C8M HM82 FAD sing 200 n n C8M HM83 FAD sing 201 n n C9 C9A FAD doub 202 n y C9 H9 FAD sing 203 n n C9A N10 FAD sing 204 n n N10 C10 FAD sing 205 n n N10 C1' FAD sing 206 n n C1' C2' FAD sing 207 n n C1' "H1'1" FAD sing 208 n n C1' "H1'2" FAD sing 209 n n C2' O2' FAD sing 210 n n C2' C3' FAD sing 211 n n C2' H2' FAD sing 212 n n O2' HO2' FAD sing 213 n n C3' O3' FAD sing 214 n n C3' C4' FAD sing 215 n n C3' H3' FAD sing 216 n n O3' HO3' FAD sing 217 n n C4' O4' FAD sing 218 n n C4' C5' FAD sing 219 n n C4' H4' FAD sing 220 n n O4' HO4' FAD sing 221 n n C5' O5' FAD sing 222 n n C5' "H5'1" FAD sing 223 n n C5' "H5'2" FAD sing 224 n n O5' P FAD sing 225 n n P O1P FAD doub 226 n n P O2P FAD sing 227 n n P O3P FAD sing 228 n n O2P HOP2 FAD sing 229 n n # _atom_sites.entry_id 4GTB _atom_sites.fract_transf_matrix[1][1] 0.009044 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009044 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008215 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 301 300 FAD FDD . C 3 UMP A 1 302 303 UMP DDP . D 4 D16 A 1 303 520 D16 D16 . E 5 CL A 1 304 1 CL CL . F 6 HOH A 1 401 1 HOH HOH . F 6 HOH A 2 402 2 HOH HOH . F 6 HOH A 3 403 3 HOH HOH . F 6 HOH A 4 404 4 HOH HOH . F 6 HOH A 5 405 5 HOH HOH . F 6 HOH A 6 406 6 HOH HOH . F 6 HOH A 7 407 7 HOH HOH . F 6 HOH A 8 408 8 HOH HOH . F 6 HOH A 9 409 9 HOH HOH . F 6 HOH A 10 410 10 HOH HOH . F 6 HOH A 11 411 11 HOH HOH . F 6 HOH A 12 412 12 HOH HOH . F 6 HOH A 13 413 13 HOH HOH . F 6 HOH A 14 414 14 HOH HOH . F 6 HOH A 15 415 15 HOH HOH . F 6 HOH A 16 416 16 HOH HOH . F 6 HOH A 17 417 17 HOH HOH . F 6 HOH A 18 418 18 HOH HOH . F 6 HOH A 19 419 19 HOH HOH . F 6 HOH A 20 420 20 HOH HOH . F 6 HOH A 21 421 21 HOH HOH . F 6 HOH A 22 422 22 HOH HOH . F 6 HOH A 23 423 23 HOH HOH . F 6 HOH A 24 424 24 HOH HOH . F 6 HOH A 25 425 25 HOH HOH . F 6 HOH A 26 426 26 HOH HOH . F 6 HOH A 27 427 27 HOH HOH . F 6 HOH A 28 428 28 HOH HOH . F 6 HOH A 29 429 29 HOH HOH . F 6 HOH A 30 430 30 HOH HOH . F 6 HOH A 31 431 31 HOH HOH . F 6 HOH A 32 432 32 HOH HOH . F 6 HOH A 33 433 33 HOH HOH . F 6 HOH A 34 434 34 HOH HOH . F 6 HOH A 35 435 35 HOH HOH . F 6 HOH A 36 436 36 HOH HOH . F 6 HOH A 37 437 37 HOH HOH . F 6 HOH A 38 438 38 HOH HOH . F 6 HOH A 39 439 39 HOH HOH . F 6 HOH A 40 440 40 HOH HOH . F 6 HOH A 41 441 41 HOH HOH . F 6 HOH A 42 442 42 HOH HOH . F 6 HOH A 43 443 43 HOH HOH . F 6 HOH A 44 444 44 HOH HOH . F 6 HOH A 45 445 45 HOH HOH . F 6 HOH A 46 446 46 HOH HOH . F 6 HOH A 47 447 47 HOH HOH . F 6 HOH A 48 448 48 HOH HOH . F 6 HOH A 49 449 49 HOH HOH . F 6 HOH A 50 450 50 HOH HOH . F 6 HOH A 51 451 51 HOH HOH . F 6 HOH A 52 452 52 HOH HOH . F 6 HOH A 53 453 53 HOH HOH . F 6 HOH A 54 454 54 HOH HOH . F 6 HOH A 55 455 55 HOH HOH . F 6 HOH A 56 456 56 HOH HOH . F 6 HOH A 57 457 57 HOH HOH . F 6 HOH A 58 458 58 HOH HOH . F 6 HOH A 59 459 59 HOH HOH . F 6 HOH A 60 460 60 HOH HOH . F 6 HOH A 61 461 61 HOH HOH . F 6 HOH A 62 462 62 HOH HOH . F 6 HOH A 63 463 63 HOH HOH . F 6 HOH A 64 464 64 HOH HOH . F 6 HOH A 65 465 65 HOH HOH . F 6 HOH A 66 466 66 HOH HOH . F 6 HOH A 67 467 67 HOH HOH . F 6 HOH A 68 468 68 HOH HOH . F 6 HOH A 69 469 69 HOH HOH . F 6 HOH A 70 470 70 HOH HOH . F 6 HOH A 71 471 71 HOH HOH . F 6 HOH A 72 472 72 HOH HOH . F 6 HOH A 73 473 73 HOH HOH . F 6 HOH A 74 474 74 HOH HOH . F 6 HOH A 75 475 75 HOH HOH . F 6 HOH A 76 476 76 HOH HOH . F 6 HOH A 77 477 77 HOH HOH . F 6 HOH A 78 478 78 HOH HOH . F 6 HOH A 79 479 79 HOH HOH . F 6 HOH A 80 480 80 HOH HOH . F 6 HOH A 81 481 81 HOH HOH . F 6 HOH A 82 482 82 HOH HOH . F 6 HOH A 83 483 83 HOH HOH . F 6 HOH A 84 484 84 HOH HOH . F 6 HOH A 85 485 85 HOH HOH . F 6 HOH A 86 486 86 HOH HOH . F 6 HOH A 87 487 87 HOH HOH . F 6 HOH A 88 488 88 HOH HOH . F 6 HOH A 89 489 89 HOH HOH . F 6 HOH A 90 490 90 HOH HOH . F 6 HOH A 91 491 91 HOH HOH . F 6 HOH A 92 492 92 HOH HOH . F 6 HOH A 93 493 93 HOH HOH . F 6 HOH A 94 494 94 HOH HOH . F 6 HOH A 95 495 95 HOH HOH . F 6 HOH A 96 496 96 HOH HOH . F 6 HOH A 97 497 97 HOH HOH . F 6 HOH A 98 498 98 HOH HOH . F 6 HOH A 99 499 99 HOH HOH . F 6 HOH A 100 500 100 HOH HOH . F 6 HOH A 101 501 101 HOH HOH . F 6 HOH A 102 502 102 HOH HOH . F 6 HOH A 103 503 103 HOH HOH . F 6 HOH A 104 504 104 HOH HOH . F 6 HOH A 105 505 105 HOH HOH . F 6 HOH A 106 506 106 HOH HOH . F 6 HOH A 107 507 107 HOH HOH . F 6 HOH A 108 508 108 HOH HOH . F 6 HOH A 109 509 109 HOH HOH . F 6 HOH A 110 510 110 HOH HOH . F 6 HOH A 111 511 111 HOH HOH . F 6 HOH A 112 512 112 HOH HOH . F 6 HOH A 113 513 113 HOH HOH . F 6 HOH A 114 514 114 HOH HOH . F 6 HOH A 115 515 115 HOH HOH . F 6 HOH A 116 516 116 HOH HOH . F 6 HOH A 117 517 117 HOH HOH . F 6 HOH A 118 518 118 HOH HOH . F 6 HOH A 119 519 119 HOH HOH . F 6 HOH A 120 520 120 HOH HOH . F 6 HOH A 121 521 121 HOH HOH . F 6 HOH A 122 522 122 HOH HOH . F 6 HOH A 123 523 123 HOH HOH . F 6 HOH A 124 524 124 HOH HOH . F 6 HOH A 125 525 125 HOH HOH . F 6 HOH A 126 526 126 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . B 2 -55.657 -8.536 31.177 1 25.27 ? PA FAD 301 A 1 HETATM 2 O O1A FAD . . . B 2 -54.604 -8.241 30.155 1 23.54 ? O1A FAD 301 A 1 HETATM 3 O O2A FAD . . . B 2 -55.453 -8.25 32.64 1 24.13 ? O2A FAD 301 A 1 HETATM 4 O O5B FAD . . . B 2 -56.954 -7.665 30.754 1 24.55 ? O5B FAD 301 A 1 HETATM 5 C C5B FAD . . . B 2 -58.109 -7.666 31.598 1 24.94 ? C5B FAD 301 A 1 HETATM 6 C C4B FAD . . . B 2 -59.288 -7.241 30.755 1 24.85 ? C4B FAD 301 A 1 HETATM 7 O O4B FAD . . . B 2 -59.048 -5.925 30.239 1 26.3 ? O4B FAD 301 A 1 HETATM 8 C C3B FAD . . . B 2 -59.477 -8.118 29.538 1 26.45 ? C3B FAD 301 A 1 HETATM 9 O O3B FAD . . . B 2 -60.28 -9.26 29.84 1 29.82 ? O3B FAD 301 A 1 HETATM 10 C C2B FAD . . . B 2 -60.094 -7.211 28.505 1 26.96 ? C2B FAD 301 A 1 HETATM 11 O O2B FAD . . . B 2 -61.49 -7.056 28.79 1 28.35 ? O2B FAD 301 A 1 HETATM 12 C C1B FAD . . . B 2 -59.403 -5.914 28.864 1 25.79 ? C1B FAD 301 A 1 HETATM 13 N N9A FAD . . . B 2 -58.205 -5.514 28.146 1 25.59 ? N9A FAD 301 A 1 HETATM 14 C C8A FAD . . . B 2 -56.986 -5.183 28.675 1 26.59 ? C8A FAD 301 A 1 HETATM 15 N N7A FAD . . . B 2 -56.192 -4.701 27.695 1 26.34 ? N7A FAD 301 A 1 HETATM 16 C C5A FAD . . . B 2 -56.919 -4.66 26.55 1 25.89 ? C5A FAD 301 A 1 HETATM 17 C C6A FAD . . . B 2 -56.695 -4.261 25.243 1 24.55 ? C6A FAD 301 A 1 HETATM 18 N N6A FAD . . . B 2 -55.549 -3.743 24.839 1 25.79 ? N6A FAD 301 A 1 HETATM 19 N N1A FAD . . . B 2 -57.71 -4.374 24.355 1 26.43 ? N1A FAD 301 A 1 HETATM 20 C C2A FAD . . . B 2 -58.889 -4.88 24.683 1 23.69 ? C2A FAD 301 A 1 HETATM 21 N N3A FAD . . . B 2 -59.195 -5.271 25.922 1 25.68 ? N3A FAD 301 A 1 HETATM 22 C C4A FAD . . . B 2 -58.213 -5.186 26.863 1 24.31 ? C4A FAD 301 A 1 HETATM 23 N N1 FAD . . . B 2 -51.428 -15.987 24.991 1 24.57 ? N1 FAD 301 A 1 HETATM 24 C C2 FAD . . . B 2 -50.685 -16.188 23.951 1 26.86 ? C2 FAD 301 A 1 HETATM 25 O O2 FAD . . . B 2 -50.104 -15.213 23.49 1 25.91 ? O2 FAD 301 A 1 HETATM 26 N N3 FAD . . . B 2 -50.534 -17.393 23.369 1 26.55 ? N3 FAD 301 A 1 HETATM 27 C C4 FAD . . . B 2 -51.123 -18.511 23.791 1 27.06 ? C4 FAD 301 A 1 HETATM 28 O O4 FAD . . . B 2 -51.001 -19.645 23.289 1 26.85 ? O4 FAD 301 A 1 HETATM 29 C C4X FAD . . . B 2 -51.952 -18.404 24.946 1 26.65 ? C4X FAD 301 A 1 HETATM 30 N N5 FAD . . . B 2 -52.584 -19.516 25.52 1 27.23 ? N5 FAD 301 A 1 HETATM 31 C C5X FAD . . . B 2 -53.322 -19.266 26.689 1 26 ? C5X FAD 301 A 1 HETATM 32 C C6 FAD . . . B 2 -53.976 -20.466 27.254 1 26.99 ? C6 FAD 301 A 1 HETATM 33 C C7 FAD . . . B 2 -54.756 -20.278 28.477 1 27 ? C7 FAD 301 A 1 HETATM 34 C C7M FAD . . . B 2 -55.428 -21.54 29.044 1 30.11 ? C7M FAD 301 A 1 HETATM 35 C C8 FAD . . . B 2 -54.91 -18.959 29.065 1 25.96 ? C8 FAD 301 A 1 HETATM 36 C C8M FAD . . . B 2 -55.708 -18.81 30.34 1 27.55 ? C8M FAD 301 A 1 HETATM 37 C C9 FAD . . . B 2 -54.283 -17.879 28.532 1 25.78 ? C9 FAD 301 A 1 HETATM 38 C C9A FAD . . . B 2 -53.446 -17.957 27.341 1 24.09 ? C9A FAD 301 A 1 HETATM 39 N N10 FAD . . . B 2 -52.864 -16.942 26.782 1 24.59 ? N10 FAD 301 A 1 HETATM 40 C C10 FAD . . . B 2 -52.081 -17.099 25.613 1 25.17 ? C10 FAD 301 A 1 HETATM 41 C C1' FAD . . . B 2 -52.867 -15.599 27.343 1 25.22 ? C1' FAD 301 A 1 HETATM 42 C C2' FAD . . . B 2 -54.101 -14.807 27.013 1 28.61 ? C2' FAD 301 A 1 HETATM 43 O O2' FAD . . . B 2 -54.046 -14.541 25.599 1 26.02 ? O2' FAD 301 A 1 HETATM 44 C C3' FAD . . . B 2 -54.152 -13.513 27.835 1 26.1 ? C3' FAD 301 A 1 HETATM 45 O O3' FAD . . . B 2 -53.015 -12.676 27.569 1 27.63 ? O3' FAD 301 A 1 HETATM 46 C C4' FAD . . . B 2 -54.249 -13.748 29.348 1 24.98 ? C4' FAD 301 A 1 HETATM 47 O O4' FAD . . . B 2 -55.251 -14.726 29.596 1 26.03 ? O4' FAD 301 A 1 HETATM 48 C C5' FAD . . . B 2 -54.657 -12.48 30.133 1 27.61 ? C5' FAD 301 A 1 HETATM 49 O O5' FAD . . . B 2 -56.067 -12.286 29.882 1 29.15 ? O5' FAD 301 A 1 HETATM 50 P P FAD . . . B 2 -56.696 -10.806 29.712 1 26.03 ? P FAD 301 A 1 HETATM 51 O O1P FAD . . . B 2 -56.304 -10.067 28.493 1 26.43 ? O1P FAD 301 A 1 HETATM 52 O O2P FAD . . . B 2 -58.142 -11.047 29.91 1 26.29 ? O2P FAD 301 A 1 HETATM 53 O O3P FAD . . . B 2 -56.167 -10.074 31.046 1 23.36 ? O3P FAD 301 A 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 53 #