data_4GTB
#
_model_server_result.job_id            bsGTO2c6F7rxF9oiOznMPA 
_model_server_result.datetime_utc      '2024-11-28 04:04:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4gtb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":303}' 
#
_entry.id    4GTB 
#
_exptl.entry_id    4GTB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              458.488 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            TOMUDEX 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4GTB 
_cell.length_a            110.57 
_cell.length_b            110.57 
_cell.length_c            121.73 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4GTB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        98 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 41 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_455 y-1/2,x+1/2,-z+1/2 0 1 0 1 0 0 0 0 -1 -55.285 55.285 60.865 
3 'crystal symmetry operation' 10_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -110.57 0 0 
4 'crystal symmetry operation' 16_445 -y-1/2,-x-1/2,-z+1/2 0 -1 0 -1 0 0 0 0 -1 -55.285 -55.285 60.865 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H22 N4 O6 S' 
_chem_comp.formula_weight    458.488 
_chem_comp.id                D16 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              TOMUDEX 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ZD1694;Raltitrexed 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 D16 sing 83 n n 
N1 C8A D16 sing 84 n n 
N1 HN1 D16 sing 85 n n 
C2 CM2 D16 sing 86 n n 
C2 N3 D16 doub 87 n n 
CM2 HM21 D16 sing 88 n n 
CM2 HM22 D16 sing 89 n n 
CM2 HM23 D16 sing 90 n n 
N3 C4 D16 sing 91 n n 
C4 O4 D16 doub 92 n n 
C4 C4A D16 sing 93 n n 
C4A C5 D16 doub 94 n y 
C4A C8A D16 sing 95 n y 
C5 C6 D16 sing 96 n y 
C5 H5 D16 sing 97 n n 
C6 C7 D16 doub 98 n y 
C6 C9 D16 sing 99 n n 
C7 C8 D16 sing 100 n y 
C7 H7 D16 sing 101 n n 
C8 C8A D16 doub 102 n y 
C8 H8 D16 sing 103 n n 
C9 N10 D16 sing 104 n n 
C9 H91 D16 sing 105 n n 
C9 H92 D16 sing 106 n n 
N10 C14 D16 sing 107 n n 
N10 CP1 D16 sing 108 n n 
C11 S13 D16 sing 109 n y 
C11 C16 D16 doub 110 n y 
C11 C D16 sing 111 n n 
S13 C14 D16 sing 112 n y 
C14 C15 D16 doub 113 n y 
C15 C16 D16 sing 114 n y 
C15 H15 D16 sing 115 n n 
C16 H16 D16 sing 116 n n 
C O D16 doub 117 n n 
C N D16 sing 118 n n 
N CA D16 sing 119 n n 
N HN D16 sing 120 n n 
CA CB D16 sing 121 n n 
CA CT D16 sing 122 n n 
CA HA D16 sing 123 n n 
CB CG D16 sing 124 n n 
CB HB1 D16 sing 125 n n 
CB HB2 D16 sing 126 n n 
CG CD D16 sing 127 n n 
CG HG1 D16 sing 128 n n 
CG HG2 D16 sing 129 n n 
CD OE1 D16 doub 130 n n 
CD OE2 D16 sing 131 n n 
OE2 HOE2 D16 sing 132 n n 
CT O1 D16 doub 133 n n 
CT O2 D16 sing 134 n n 
O2 HO2 D16 sing 135 n n 
CP1 HP11 D16 sing 136 n n 
CP1 HP12 D16 sing 137 n n 
CP1 HP13 D16 sing 138 n n 
#
_atom_sites.entry_id                     4GTB 
_atom_sites.fract_transf_matrix[1][1]    0.009044 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009044 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008215 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FAD A 1 301 300 FAD FDD . 
C 3 UMP A 1 302 303 UMP DDP . 
D 4 D16 A 1 303 520 D16 D16 . 
E 5 CL A 1 304 1 CL CL . 
F 6 HOH A 1 401 1 HOH HOH . 
F 6 HOH A 2 402 2 HOH HOH . 
F 6 HOH A 3 403 3 HOH HOH . 
F 6 HOH A 4 404 4 HOH HOH . 
F 6 HOH A 5 405 5 HOH HOH . 
F 6 HOH A 6 406 6 HOH HOH . 
F 6 HOH A 7 407 7 HOH HOH . 
F 6 HOH A 8 408 8 HOH HOH . 
F 6 HOH A 9 409 9 HOH HOH . 
F 6 HOH A 10 410 10 HOH HOH . 
F 6 HOH A 11 411 11 HOH HOH . 
F 6 HOH A 12 412 12 HOH HOH . 
F 6 HOH A 13 413 13 HOH HOH . 
F 6 HOH A 14 414 14 HOH HOH . 
F 6 HOH A 15 415 15 HOH HOH . 
F 6 HOH A 16 416 16 HOH HOH . 
F 6 HOH A 17 417 17 HOH HOH . 
F 6 HOH A 18 418 18 HOH HOH . 
F 6 HOH A 19 419 19 HOH HOH . 
F 6 HOH A 20 420 20 HOH HOH . 
F 6 HOH A 21 421 21 HOH HOH . 
F 6 HOH A 22 422 22 HOH HOH . 
F 6 HOH A 23 423 23 HOH HOH . 
F 6 HOH A 24 424 24 HOH HOH . 
F 6 HOH A 25 425 25 HOH HOH . 
F 6 HOH A 26 426 26 HOH HOH . 
F 6 HOH A 27 427 27 HOH HOH . 
F 6 HOH A 28 428 28 HOH HOH . 
F 6 HOH A 29 429 29 HOH HOH . 
F 6 HOH A 30 430 30 HOH HOH . 
F 6 HOH A 31 431 31 HOH HOH . 
F 6 HOH A 32 432 32 HOH HOH . 
F 6 HOH A 33 433 33 HOH HOH . 
F 6 HOH A 34 434 34 HOH HOH . 
F 6 HOH A 35 435 35 HOH HOH . 
F 6 HOH A 36 436 36 HOH HOH . 
F 6 HOH A 37 437 37 HOH HOH . 
F 6 HOH A 38 438 38 HOH HOH . 
F 6 HOH A 39 439 39 HOH HOH . 
F 6 HOH A 40 440 40 HOH HOH . 
F 6 HOH A 41 441 41 HOH HOH . 
F 6 HOH A 42 442 42 HOH HOH . 
F 6 HOH A 43 443 43 HOH HOH . 
F 6 HOH A 44 444 44 HOH HOH . 
F 6 HOH A 45 445 45 HOH HOH . 
F 6 HOH A 46 446 46 HOH HOH . 
F 6 HOH A 47 447 47 HOH HOH . 
F 6 HOH A 48 448 48 HOH HOH . 
F 6 HOH A 49 449 49 HOH HOH . 
F 6 HOH A 50 450 50 HOH HOH . 
F 6 HOH A 51 451 51 HOH HOH . 
F 6 HOH A 52 452 52 HOH HOH . 
F 6 HOH A 53 453 53 HOH HOH . 
F 6 HOH A 54 454 54 HOH HOH . 
F 6 HOH A 55 455 55 HOH HOH . 
F 6 HOH A 56 456 56 HOH HOH . 
F 6 HOH A 57 457 57 HOH HOH . 
F 6 HOH A 58 458 58 HOH HOH . 
F 6 HOH A 59 459 59 HOH HOH . 
F 6 HOH A 60 460 60 HOH HOH . 
F 6 HOH A 61 461 61 HOH HOH . 
F 6 HOH A 62 462 62 HOH HOH . 
F 6 HOH A 63 463 63 HOH HOH . 
F 6 HOH A 64 464 64 HOH HOH . 
F 6 HOH A 65 465 65 HOH HOH . 
F 6 HOH A 66 466 66 HOH HOH . 
F 6 HOH A 67 467 67 HOH HOH . 
F 6 HOH A 68 468 68 HOH HOH . 
F 6 HOH A 69 469 69 HOH HOH . 
F 6 HOH A 70 470 70 HOH HOH . 
F 6 HOH A 71 471 71 HOH HOH . 
F 6 HOH A 72 472 72 HOH HOH . 
F 6 HOH A 73 473 73 HOH HOH . 
F 6 HOH A 74 474 74 HOH HOH . 
F 6 HOH A 75 475 75 HOH HOH . 
F 6 HOH A 76 476 76 HOH HOH . 
F 6 HOH A 77 477 77 HOH HOH . 
F 6 HOH A 78 478 78 HOH HOH . 
F 6 HOH A 79 479 79 HOH HOH . 
F 6 HOH A 80 480 80 HOH HOH . 
F 6 HOH A 81 481 81 HOH HOH . 
F 6 HOH A 82 482 82 HOH HOH . 
F 6 HOH A 83 483 83 HOH HOH . 
F 6 HOH A 84 484 84 HOH HOH . 
F 6 HOH A 85 485 85 HOH HOH . 
F 6 HOH A 86 486 86 HOH HOH . 
F 6 HOH A 87 487 87 HOH HOH . 
F 6 HOH A 88 488 88 HOH HOH . 
F 6 HOH A 89 489 89 HOH HOH . 
F 6 HOH A 90 490 90 HOH HOH . 
F 6 HOH A 91 491 91 HOH HOH . 
F 6 HOH A 92 492 92 HOH HOH . 
F 6 HOH A 93 493 93 HOH HOH . 
F 6 HOH A 94 494 94 HOH HOH . 
F 6 HOH A 95 495 95 HOH HOH . 
F 6 HOH A 96 496 96 HOH HOH . 
F 6 HOH A 97 497 97 HOH HOH . 
F 6 HOH A 98 498 98 HOH HOH . 
F 6 HOH A 99 499 99 HOH HOH . 
F 6 HOH A 100 500 100 HOH HOH . 
F 6 HOH A 101 501 101 HOH HOH . 
F 6 HOH A 102 502 102 HOH HOH . 
F 6 HOH A 103 503 103 HOH HOH . 
F 6 HOH A 104 504 104 HOH HOH . 
F 6 HOH A 105 505 105 HOH HOH . 
F 6 HOH A 106 506 106 HOH HOH . 
F 6 HOH A 107 507 107 HOH HOH . 
F 6 HOH A 108 508 108 HOH HOH . 
F 6 HOH A 109 509 109 HOH HOH . 
F 6 HOH A 110 510 110 HOH HOH . 
F 6 HOH A 111 511 111 HOH HOH . 
F 6 HOH A 112 512 112 HOH HOH . 
F 6 HOH A 113 513 113 HOH HOH . 
F 6 HOH A 114 514 114 HOH HOH . 
F 6 HOH A 115 515 115 HOH HOH . 
F 6 HOH A 116 516 116 HOH HOH . 
F 6 HOH A 117 517 117 HOH HOH . 
F 6 HOH A 118 518 118 HOH HOH . 
F 6 HOH A 119 519 119 HOH HOH . 
F 6 HOH A 120 520 120 HOH HOH . 
F 6 HOH A 121 521 121 HOH HOH . 
F 6 HOH A 122 522 122 HOH HOH . 
F 6 HOH A 123 523 123 HOH HOH . 
F 6 HOH A 124 524 124 HOH HOH . 
F 6 HOH A 125 525 125 HOH HOH . 
F 6 HOH A 126 526 126 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 D16 . . . D 4 -56.863 -17.047 25.736 1 49.51 ? N1 D16 303 A 1 
HETATM 2 C C2 D16 . . . D 4 -57.552 -17.65 26.739 1 47.46 ? C2 D16 303 A 1 
HETATM 3 C CM2 D16 . . . D 4 -58.288 -16.804 27.723 1 49.13 ? CM2 D16 303 A 1 
HETATM 4 N N3 D16 . . . D 4 -57.624 -19.004 26.856 1 50.88 ? N3 D16 303 A 1 
HETATM 5 C C4 D16 . . . D 4 -56.997 -19.824 25.979 1 50.59 ? C4 D16 303 A 1 
HETATM 6 O O4 D16 . . . D 4 -57.066 -21.07 26.131 1 51.88 ? O4 D16 303 A 1 
HETATM 7 C C4A D16 . . . D 4 -56.215 -19.215 24.863 1 48.86 ? C4A D16 303 A 1 
HETATM 8 C C5 D16 . . . D 4 -55.527 -19.966 23.916 1 49.23 ? C5 D16 303 A 1 
HETATM 9 C C6 D16 . . . D 4 -54.84 -19.333 22.877 1 48.02 ? C6 D16 303 A 1 
HETATM 10 C C7 D16 . . . D 4 -54.802 -17.907 22.8 1 48.86 ? C7 D16 303 A 1 
HETATM 11 C C8 D16 . . . D 4 -55.467 -17.113 23.752 1 44.32 ? C8 D16 303 A 1 
HETATM 12 C C8A D16 . . . D 4 -56.186 -17.732 24.783 1 48.17 ? C8A D16 303 A 1 
HETATM 13 C C9 D16 . . . D 4 -54.106 -20.219 21.872 1 51.99 ? C9 D16 303 A 1 
HETATM 14 N N10 D16 . . . D 4 -54.996 -21.103 21.101 1 53.46 ? N10 D16 303 A 1 
HETATM 15 C CP1 D16 . . . D 4 -55.249 -20.805 19.688 1 56.02 ? CP1 D16 303 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           15 
#