data_4GTE # _model_server_result.job_id iETfQabhfepiNt9WwiC4ig _model_server_result.datetime_utc '2024-11-24 00:35:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gte # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":302}' # _entry.id 4GTE # _exptl.entry_id 4GTE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 457.44 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-({4-[(6aR)-3-amino-1-oxo-1,2,5,6,6a,7-hexahydroimidazo[1,5-f]pteridin-8(9H)-yl]phenyl}carbonyl)-L-glutamic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4GTE _cell.length_a 54.71 _cell.length_b 117.07 _cell.length_c 141.91 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GTE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 J N N # _chem_comp.formula 'C20 H23 N7 O6' _chem_comp.formula_weight 457.44 _chem_comp.id MEF _chem_comp.mon_nstd_flag . _chem_comp.name 'N-({4-[(6aR)-3-amino-1-oxo-1,2,5,6,6a,7-hexahydroimidazo[1,5-f]pteridin-8(9H)-yl]phenyl}carbonyl)-L-glutamic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 5,10-methylene,5,6,7,8-tetrahydrofolate # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OE2 CD MEF doub 309 n n CG CD MEF sing 310 n n CD OE1 MEF sing 311 n n OE1 HOE1 MEF sing 312 n n CB CG MEF sing 313 n n CG HG MEF sing 314 n n CG HGA MEF sing 315 n n CA CB MEF sing 316 n n CB HB MEF sing 317 n n CB HBA MEF sing 318 n n CA N MEF sing 319 n n CA CT MEF sing 320 n n CA HA MEF sing 321 n n O2 CT MEF doub 322 n n CT O1 MEF sing 323 n n O1 HO1 MEF sing 324 n n C N MEF sing 325 n n N HN MEF sing 326 n n O C MEF doub 327 n n C C11 MEF sing 328 n n CM N10 MEF sing 329 n n C9 N10 MEF sing 330 n n C14 N10 MEF sing 331 n n N5 CM MEF sing 332 n n CM HM MEF sing 333 n n CM HMA MEF sing 334 n n C4A N5 MEF sing 335 n n N5 C6 MEF sing 336 n n C6 C9 MEF sing 337 n n C9 H9 MEF sing 338 n n C9 H9A MEF sing 339 n n C7 C6 MEF sing 340 n n C6 H6 MEF sing 341 n n N8 C7 MEF sing 342 n n C7 H7 MEF sing 343 n n C7 H7A MEF sing 344 n n C8A N8 MEF sing 345 n n N8 HN8 MEF sing 346 n n N1 C8A MEF sing 347 n n C8A C4A MEF doub 348 n n C4 C4A MEF sing 349 n n C2 N1 MEF doub 350 n n NA2 C2 MEF sing 351 n n C2 N3 MEF sing 352 n n NA2 HNA2 MEF sing 353 n n NA2 HNAA MEF sing 354 n n N3 C4 MEF sing 355 n n N3 HN3 MEF sing 356 n n C4 O4 MEF doub 357 n n C16 C11 MEF doub 358 n y C11 C12 MEF sing 359 n y C12 C13 MEF doub 360 n y C12 H12 MEF sing 361 n n C14 C13 MEF sing 362 n y C13 H13 MEF sing 363 n n C16 C15 MEF sing 364 n y C16 H16 MEF sing 365 n n C15 C14 MEF doub 366 n y C15 H15 MEF sing 367 n n # _atom_sites.entry_id 4GTE _atom_sites.fract_transf_matrix[1][1] 0.018278 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008542 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007047 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FAD A 1 301 315 FAD FAD . F 2 FAD B 1 301 310 FAD FAD . G 3 MEF B 1 302 313 MEF MEF . H 2 FAD C 1 301 305 FAD FAD . I 2 FAD D 1 301 300 FAD FAD . J 3 MEF D 1 302 308 MEF MEF . K 4 HOH A 1 401 1 HOH HOH . K 4 HOH A 2 402 10 HOH HOH . K 4 HOH A 3 403 12 HOH HOH . K 4 HOH A 4 404 19 HOH HOH . K 4 HOH A 5 405 23 HOH HOH . K 4 HOH A 6 406 26 HOH HOH . K 4 HOH A 7 407 28 HOH HOH . K 4 HOH A 8 408 32 HOH HOH . K 4 HOH A 9 409 34 HOH HOH . K 4 HOH A 10 410 41 HOH HOH . K 4 HOH A 11 411 42 HOH HOH . K 4 HOH A 12 412 53 HOH HOH . K 4 HOH A 13 413 56 HOH HOH . K 4 HOH A 14 414 57 HOH HOH . K 4 HOH A 15 415 59 HOH HOH . K 4 HOH A 16 416 65 HOH HOH . K 4 HOH A 17 417 76 HOH HOH . K 4 HOH A 18 418 82 HOH HOH . K 4 HOH A 19 419 86 HOH HOH . K 4 HOH A 20 420 90 HOH HOH . K 4 HOH A 21 421 92 HOH HOH . K 4 HOH A 22 422 95 HOH HOH . K 4 HOH A 23 423 96 HOH HOH . K 4 HOH A 24 424 99 HOH HOH . K 4 HOH A 25 425 101 HOH HOH . K 4 HOH A 26 426 103 HOH HOH . K 4 HOH A 27 427 104 HOH HOH . K 4 HOH A 28 428 107 HOH HOH . K 4 HOH A 29 429 112 HOH HOH . K 4 HOH A 30 430 115 HOH HOH . K 4 HOH A 31 431 128 HOH HOH . K 4 HOH A 32 432 131 HOH HOH . K 4 HOH A 33 433 135 HOH HOH . K 4 HOH A 34 434 137 HOH HOH . K 4 HOH A 35 435 140 HOH HOH . K 4 HOH A 36 436 149 HOH HOH . K 4 HOH A 37 437 156 HOH HOH . K 4 HOH A 38 438 157 HOH HOH . K 4 HOH A 39 439 159 HOH HOH . K 4 HOH A 40 440 160 HOH HOH . K 4 HOH A 41 441 161 HOH HOH . K 4 HOH A 42 442 162 HOH HOH . L 4 HOH B 1 401 3 HOH HOH . L 4 HOH B 2 402 5 HOH HOH . L 4 HOH B 3 403 7 HOH HOH . L 4 HOH B 4 404 9 HOH HOH . L 4 HOH B 5 405 33 HOH HOH . L 4 HOH B 6 406 38 HOH HOH . L 4 HOH B 7 407 43 HOH HOH . L 4 HOH B 8 408 44 HOH HOH . L 4 HOH B 9 409 47 HOH HOH . L 4 HOH B 10 410 48 HOH HOH . L 4 HOH B 11 411 50 HOH HOH . L 4 HOH B 12 412 52 HOH HOH . L 4 HOH B 13 413 66 HOH HOH . L 4 HOH B 14 414 67 HOH HOH . L 4 HOH B 15 415 68 HOH HOH . L 4 HOH B 16 416 74 HOH HOH . L 4 HOH B 17 417 84 HOH HOH . L 4 HOH B 18 418 85 HOH HOH . L 4 HOH B 19 419 87 HOH HOH . L 4 HOH B 20 420 93 HOH HOH . L 4 HOH B 21 421 98 HOH HOH . L 4 HOH B 22 422 102 HOH HOH . L 4 HOH B 23 423 106 HOH HOH . L 4 HOH B 24 424 108 HOH HOH . L 4 HOH B 25 425 109 HOH HOH . L 4 HOH B 26 426 110 HOH HOH . L 4 HOH B 27 427 114 HOH HOH . L 4 HOH B 28 428 122 HOH HOH . L 4 HOH B 29 429 124 HOH HOH . L 4 HOH B 30 430 125 HOH HOH . L 4 HOH B 31 431 132 HOH HOH . L 4 HOH B 32 432 138 HOH HOH . L 4 HOH B 33 433 141 HOH HOH . L 4 HOH B 34 434 142 HOH HOH . L 4 HOH B 35 435 143 HOH HOH . L 4 HOH B 36 436 144 HOH HOH . L 4 HOH B 37 437 147 HOH HOH . L 4 HOH B 38 438 148 HOH HOH . M 4 HOH C 1 401 4 HOH HOH . M 4 HOH C 2 402 8 HOH HOH . M 4 HOH C 3 403 11 HOH HOH . M 4 HOH C 4 404 15 HOH HOH . M 4 HOH C 5 405 16 HOH HOH . M 4 HOH C 6 406 18 HOH HOH . M 4 HOH C 7 407 22 HOH HOH . M 4 HOH C 8 408 25 HOH HOH . M 4 HOH C 9 409 29 HOH HOH . M 4 HOH C 10 410 30 HOH HOH . M 4 HOH C 11 411 31 HOH HOH . M 4 HOH C 12 412 35 HOH HOH . M 4 HOH C 13 413 39 HOH HOH . M 4 HOH C 14 414 40 HOH HOH . M 4 HOH C 15 415 45 HOH HOH . M 4 HOH C 16 416 46 HOH HOH . M 4 HOH C 17 417 49 HOH HOH . M 4 HOH C 18 418 54 HOH HOH . M 4 HOH C 19 419 55 HOH HOH . M 4 HOH C 20 420 63 HOH HOH . M 4 HOH C 21 421 64 HOH HOH . M 4 HOH C 22 422 77 HOH HOH . M 4 HOH C 23 423 79 HOH HOH . M 4 HOH C 24 424 80 HOH HOH . M 4 HOH C 25 425 97 HOH HOH . M 4 HOH C 26 426 105 HOH HOH . M 4 HOH C 27 427 113 HOH HOH . M 4 HOH C 28 428 118 HOH HOH . M 4 HOH C 29 429 119 HOH HOH . M 4 HOH C 30 430 120 HOH HOH . M 4 HOH C 31 431 121 HOH HOH . M 4 HOH C 32 432 126 HOH HOH . M 4 HOH C 33 433 127 HOH HOH . M 4 HOH C 34 434 130 HOH HOH . M 4 HOH C 35 435 134 HOH HOH . M 4 HOH C 36 436 136 HOH HOH . M 4 HOH C 37 437 139 HOH HOH . M 4 HOH C 38 438 145 HOH HOH . M 4 HOH C 39 439 151 HOH HOH . M 4 HOH C 40 440 154 HOH HOH . M 4 HOH C 41 441 155 HOH HOH . M 4 HOH C 42 442 158 HOH HOH . N 4 HOH D 1 401 2 HOH HOH . N 4 HOH D 2 402 13 HOH HOH . N 4 HOH D 3 403 14 HOH HOH . N 4 HOH D 4 404 17 HOH HOH . N 4 HOH D 5 405 20 HOH HOH . N 4 HOH D 6 406 21 HOH HOH . N 4 HOH D 7 407 24 HOH HOH . N 4 HOH D 8 408 27 HOH HOH . N 4 HOH D 9 409 36 HOH HOH . N 4 HOH D 10 410 37 HOH HOH . N 4 HOH D 11 411 51 HOH HOH . N 4 HOH D 12 412 58 HOH HOH . N 4 HOH D 13 413 60 HOH HOH . N 4 HOH D 14 414 61 HOH HOH . N 4 HOH D 15 415 62 HOH HOH . N 4 HOH D 16 416 69 HOH HOH . N 4 HOH D 17 417 70 HOH HOH . N 4 HOH D 18 418 71 HOH HOH . N 4 HOH D 19 419 72 HOH HOH . N 4 HOH D 20 420 73 HOH HOH . N 4 HOH D 21 421 75 HOH HOH . N 4 HOH D 22 422 78 HOH HOH . N 4 HOH D 23 423 81 HOH HOH . N 4 HOH D 24 424 83 HOH HOH . N 4 HOH D 25 425 88 HOH HOH . N 4 HOH D 26 426 89 HOH HOH . N 4 HOH D 27 427 94 HOH HOH . N 4 HOH D 28 428 100 HOH HOH . N 4 HOH D 29 429 111 HOH HOH . N 4 HOH D 30 430 116 HOH HOH . N 4 HOH D 31 431 117 HOH HOH . N 4 HOH D 32 432 123 HOH HOH . N 4 HOH D 33 433 129 HOH HOH . N 4 HOH D 34 434 133 HOH HOH . N 4 HOH D 35 435 146 HOH HOH . N 4 HOH D 36 436 150 HOH HOH . N 4 HOH D 37 437 152 HOH HOH . N 4 HOH D 38 438 153 HOH HOH . N 4 HOH D 39 439 163 HOH HOH . N 4 HOH D 40 440 164 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N10 MEF . . . G 3 50.697 31.375 102.322 1 75.8 ? N10 MEF 302 B 1 HETATM 2 C CM MEF . . . G 3 49.272 30.96 102.328 1 74.17 ? CM MEF 302 B 1 HETATM 3 N N5 MEF . . . G 3 48.55 31.788 103.312 1 73.05 ? N5 MEF 302 B 1 HETATM 4 C C9 MEF . . . G 3 50.891 32.507 103.269 1 74.39 ? C9 MEF 302 B 1 HETATM 5 C C6 MEF . . . G 3 49.507 32.844 103.801 1 73.9 ? C6 MEF 302 B 1 HETATM 6 C C7 MEF . . . G 3 49.147 34.281 103.448 1 73.31 ? C7 MEF 302 B 1 HETATM 7 N N8 MEF . . . G 3 47.77 34.37 103.907 1 75.4 ? N8 MEF 302 B 1 HETATM 8 C C8A MEF . . . G 3 46.866 33.547 103.289 1 74.74 ? C8A MEF 302 B 1 HETATM 9 C C4A MEF . . . G 3 47.237 32.242 102.94 1 73.43 ? C4A MEF 302 B 1 HETATM 10 N N1 MEF . . . G 3 45.633 34.031 102.975 1 72.06 ? N1 MEF 302 B 1 HETATM 11 C C2 MEF . . . G 3 44.722 33.274 102.35 1 70.03 ? C2 MEF 302 B 1 HETATM 12 N NA2 MEF . . . G 3 43.538 33.864 102.116 1 67.29 ? NA2 MEF 302 B 1 HETATM 13 N N3 MEF . . . G 3 45.018 31.978 102.007 1 71.77 ? N3 MEF 302 B 1 HETATM 14 C C4 MEF . . . G 3 46.263 31.453 102.295 1 73.21 ? C4 MEF 302 B 1 HETATM 15 O O4 MEF . . . G 3 46.549 30.167 101.945 1 73.98 ? O4 MEF 302 B 1 # _model_server_stats.io_time_ms 76 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 15 #