data_4GTF # _model_server_result.job_id Dxj34GiG4sAwcgXQwSkn7g _model_server_result.datetime_utc '2024-11-15 15:54:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gtf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4GTF # _exptl.entry_id 4GTF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4GTF _cell.length_a 109.81 _cell.length_b 109.81 _cell.length_c 122.29 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GTF _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_455 y-1/2,x+1/2,-z+1/2 0 1 0 1 0 0 0 0 -1 -54.905 54.905 61.145 3 'crystal symmetry operation' 10_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -109.81 0 0 4 'crystal symmetry operation' 16_445 -y-1/2,-x-1/2,-z+1/2 0 -1 0 -1 0 0 0 0 -1 -54.905 -54.905 61.145 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 4GTF _atom_sites.fract_transf_matrix[1][1] 0.009107 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009107 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008177 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 301 300 FAD FAD . C 3 UMP A 1 302 303 UMP UMP . D 4 MEF A 1 303 308 MEF MEF . E 5 CL A 1 304 310 CL CL . F 6 HOH A 1 401 1 HOH HOH . F 6 HOH A 2 402 2 HOH HOH . F 6 HOH A 3 403 3 HOH HOH . F 6 HOH A 4 404 4 HOH HOH . F 6 HOH A 5 405 5 HOH HOH . F 6 HOH A 6 406 6 HOH HOH . F 6 HOH A 7 407 7 HOH HOH . F 6 HOH A 8 408 8 HOH HOH . F 6 HOH A 9 409 9 HOH HOH . F 6 HOH A 10 410 10 HOH HOH . F 6 HOH A 11 411 11 HOH HOH . F 6 HOH A 12 412 12 HOH HOH . F 6 HOH A 13 413 13 HOH HOH . F 6 HOH A 14 414 14 HOH HOH . F 6 HOH A 15 415 15 HOH HOH . F 6 HOH A 16 416 16 HOH HOH . F 6 HOH A 17 417 17 HOH HOH . F 6 HOH A 18 418 18 HOH HOH . F 6 HOH A 19 419 19 HOH HOH . F 6 HOH A 20 420 20 HOH HOH . F 6 HOH A 21 421 21 HOH HOH . F 6 HOH A 22 422 22 HOH HOH . F 6 HOH A 23 423 23 HOH HOH . F 6 HOH A 24 424 24 HOH HOH . F 6 HOH A 25 425 25 HOH HOH . F 6 HOH A 26 426 26 HOH HOH . F 6 HOH A 27 427 27 HOH HOH . F 6 HOH A 28 428 28 HOH HOH . F 6 HOH A 29 429 29 HOH HOH . F 6 HOH A 30 430 30 HOH HOH . F 6 HOH A 31 431 31 HOH HOH . F 6 HOH A 32 432 32 HOH HOH . F 6 HOH A 33 433 33 HOH HOH . F 6 HOH A 34 434 34 HOH HOH . F 6 HOH A 35 435 35 HOH HOH . F 6 HOH A 36 436 36 HOH HOH . F 6 HOH A 37 437 37 HOH HOH . F 6 HOH A 38 438 38 HOH HOH . F 6 HOH A 39 439 39 HOH HOH . F 6 HOH A 40 440 40 HOH HOH . F 6 HOH A 41 441 41 HOH HOH . F 6 HOH A 42 442 42 HOH HOH . F 6 HOH A 43 443 43 HOH HOH . F 6 HOH A 44 444 44 HOH HOH . F 6 HOH A 45 445 45 HOH HOH . F 6 HOH A 46 446 46 HOH HOH . F 6 HOH A 47 447 47 HOH HOH . F 6 HOH A 48 448 48 HOH HOH . F 6 HOH A 49 449 49 HOH HOH . F 6 HOH A 50 450 50 HOH HOH . F 6 HOH A 51 451 51 HOH HOH . F 6 HOH A 52 452 52 HOH HOH . F 6 HOH A 53 453 53 HOH HOH . F 6 HOH A 54 454 54 HOH HOH . F 6 HOH A 55 455 55 HOH HOH . F 6 HOH A 56 456 56 HOH HOH . F 6 HOH A 57 457 57 HOH HOH . F 6 HOH A 58 458 58 HOH HOH . F 6 HOH A 59 459 59 HOH HOH . F 6 HOH A 60 460 60 HOH HOH . F 6 HOH A 61 461 61 HOH HOH . F 6 HOH A 62 462 62 HOH HOH . F 6 HOH A 63 463 63 HOH HOH . F 6 HOH A 64 464 64 HOH HOH . F 6 HOH A 65 465 65 HOH HOH . F 6 HOH A 66 466 66 HOH HOH . F 6 HOH A 67 467 67 HOH HOH . F 6 HOH A 68 468 68 HOH HOH . F 6 HOH A 69 469 69 HOH HOH . F 6 HOH A 70 470 70 HOH HOH . F 6 HOH A 71 471 71 HOH HOH . F 6 HOH A 72 472 72 HOH HOH . F 6 HOH A 73 473 73 HOH HOH . F 6 HOH A 74 474 74 HOH HOH . F 6 HOH A 75 475 75 HOH HOH . F 6 HOH A 76 476 76 HOH HOH . F 6 HOH A 77 477 77 HOH HOH . F 6 HOH A 78 478 78 HOH HOH . F 6 HOH A 79 479 79 HOH HOH . F 6 HOH A 80 480 80 HOH HOH . F 6 HOH A 81 481 81 HOH HOH . F 6 HOH A 82 482 82 HOH HOH . F 6 HOH A 83 483 83 HOH HOH . F 6 HOH A 84 484 84 HOH HOH . F 6 HOH A 85 485 85 HOH HOH . F 6 HOH A 86 486 86 HOH HOH . F 6 HOH A 87 487 87 HOH HOH . F 6 HOH A 88 488 88 HOH HOH . F 6 HOH A 89 489 89 HOH HOH . F 6 HOH A 90 490 90 HOH HOH . F 6 HOH A 91 491 91 HOH HOH . F 6 HOH A 92 492 92 HOH HOH . F 6 HOH A 93 493 93 HOH HOH . F 6 HOH A 94 494 94 HOH HOH . F 6 HOH A 95 495 95 HOH HOH . F 6 HOH A 96 496 96 HOH HOH . F 6 HOH A 97 497 97 HOH HOH . F 6 HOH A 98 498 98 HOH HOH . F 6 HOH A 99 499 99 HOH HOH . F 6 HOH A 100 500 100 HOH HOH . F 6 HOH A 101 501 101 HOH HOH . F 6 HOH A 102 502 102 HOH HOH . F 6 HOH A 103 503 103 HOH HOH . F 6 HOH A 104 504 104 HOH HOH . F 6 HOH A 105 505 105 HOH HOH . F 6 HOH A 106 506 106 HOH HOH . F 6 HOH A 107 507 107 HOH HOH . F 6 HOH A 108 508 108 HOH HOH . F 6 HOH A 109 509 109 HOH HOH . F 6 HOH A 110 510 110 HOH HOH . F 6 HOH A 111 511 111 HOH HOH . F 6 HOH A 112 512 112 HOH HOH . F 6 HOH A 113 513 113 HOH HOH . F 6 HOH A 114 514 114 HOH HOH . F 6 HOH A 115 515 115 HOH HOH . F 6 HOH A 116 516 116 HOH HOH . F 6 HOH A 117 517 117 HOH HOH . F 6 HOH A 118 518 118 HOH HOH . F 6 HOH A 119 519 119 HOH HOH . F 6 HOH A 120 520 120 HOH HOH . F 6 HOH A 121 521 121 HOH HOH . F 6 HOH A 122 522 122 HOH HOH . F 6 HOH A 123 523 123 HOH HOH . F 6 HOH A 124 524 124 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . B 2 -55.279 -8.561 31.269 1 24.72 ? PA FAD 301 A 1 HETATM 2 O O1A FAD . . . B 2 -55.045 -8.356 32.772 1 23.25 ? O1A FAD 301 A 1 HETATM 3 O O2A FAD . . . B 2 -54.179 -8.265 30.282 1 22.37 ? O2A FAD 301 A 1 HETATM 4 O O5B FAD . . . B 2 -56.579 -7.691 30.871 1 24.35 ? O5B FAD 301 A 1 HETATM 5 C C5B FAD . . . B 2 -57.754 -7.716 31.692 1 24.77 ? C5B FAD 301 A 1 HETATM 6 C C4B FAD . . . B 2 -58.908 -7.26 30.847 1 26.07 ? C4B FAD 301 A 1 HETATM 7 O O4B FAD . . . B 2 -58.646 -5.922 30.401 1 26 ? O4B FAD 301 A 1 HETATM 8 C C3B FAD . . . B 2 -59.073 -8.078 29.586 1 26.44 ? C3B FAD 301 A 1 HETATM 9 O O3B FAD . . . B 2 -59.857 -9.235 29.848 1 29.7 ? O3B FAD 301 A 1 HETATM 10 C C2B FAD . . . B 2 -59.714 -7.134 28.616 1 26.63 ? C2B FAD 301 A 1 HETATM 11 O O2B FAD . . . B 2 -61.095 -7.003 28.941 1 26.62 ? O2B FAD 301 A 1 HETATM 12 C C1B FAD . . . B 2 -58.999 -5.861 29.019 1 25.94 ? C1B FAD 301 A 1 HETATM 13 N N9A FAD . . . B 2 -57.817 -5.455 28.279 1 25.14 ? N9A FAD 301 A 1 HETATM 14 C C8A FAD . . . B 2 -56.607 -5.089 28.782 1 27.72 ? C8A FAD 301 A 1 HETATM 15 N N7A FAD . . . B 2 -55.815 -4.623 27.803 1 25.41 ? N7A FAD 301 A 1 HETATM 16 C C5A FAD . . . B 2 -56.548 -4.614 26.663 1 24.4 ? C5A FAD 301 A 1 HETATM 17 C C6A FAD . . . B 2 -56.298 -4.24 25.352 1 24 ? C6A FAD 301 A 1 HETATM 18 N N6A FAD . . . B 2 -55.128 -3.716 25.012 1 25.24 ? N6A FAD 301 A 1 HETATM 19 N N1A FAD . . . B 2 -57.31 -4.388 24.472 1 24.79 ? N1A FAD 301 A 1 HETATM 20 C C2A FAD . . . B 2 -58.502 -4.895 24.81 1 23.3 ? C2A FAD 301 A 1 HETATM 21 N N3A FAD . . . B 2 -58.823 -5.27 26.068 1 24.79 ? N3A FAD 301 A 1 HETATM 22 C C4A FAD . . . B 2 -57.835 -5.163 26.974 1 23.61 ? C4A FAD 301 A 1 HETATM 23 N N1 FAD . . . B 2 -50.839 -15.922 25.201 1 22.72 ? N1 FAD 301 A 1 HETATM 24 C C2 FAD . . . B 2 -50.092 -16.109 24.171 1 24.87 ? C2 FAD 301 A 1 HETATM 25 O O2 FAD . . . B 2 -49.479 -15.151 23.749 1 24.42 ? O2 FAD 301 A 1 HETATM 26 N N3 FAD . . . B 2 -49.938 -17.3 23.544 1 25.47 ? N3 FAD 301 A 1 HETATM 27 C C4 FAD . . . B 2 -50.565 -18.417 23.914 1 26.46 ? C4 FAD 301 A 1 HETATM 28 O O4 FAD . . . B 2 -50.457 -19.519 23.387 1 26.21 ? O4 FAD 301 A 1 HETATM 29 C C4X FAD . . . B 2 -51.421 -18.344 25.077 1 24.5 ? C4X FAD 301 A 1 HETATM 30 N N5 FAD . . . B 2 -52.121 -19.468 25.578 1 27.23 ? N5 FAD 301 A 1 HETATM 31 C C5X FAD . . . B 2 -52.876 -19.291 26.754 1 25.99 ? C5X FAD 301 A 1 HETATM 32 C C6 FAD . . . B 2 -53.588 -20.488 27.268 1 25.2 ? C6 FAD 301 A 1 HETATM 33 C C7 FAD . . . B 2 -54.412 -20.344 28.459 1 26.18 ? C7 FAD 301 A 1 HETATM 34 C C7M FAD . . . B 2 -55.118 -21.609 28.945 1 25.82 ? C7M FAD 301 A 1 HETATM 35 C C8 FAD . . . B 2 -54.508 -19.006 29.11 1 24.98 ? C8 FAD 301 A 1 HETATM 36 C C8M FAD . . . B 2 -55.322 -18.857 30.367 1 26.42 ? C8M FAD 301 A 1 HETATM 37 C C9 FAD . . . B 2 -53.816 -17.931 28.637 1 24.63 ? C9 FAD 301 A 1 HETATM 38 C C9A FAD . . . B 2 -52.991 -17.974 27.414 1 25.26 ? C9A FAD 301 A 1 HETATM 39 N N10 FAD . . . B 2 -52.369 -16.955 26.929 1 25.11 ? N10 FAD 301 A 1 HETATM 40 C C10 FAD . . . B 2 -51.531 -17.05 25.772 1 23.2 ? C10 FAD 301 A 1 HETATM 41 C C1' FAD . . . B 2 -52.39 -15.623 27.537 1 24.23 ? C1' FAD 301 A 1 HETATM 42 C C2' FAD . . . B 2 -53.687 -14.909 27.192 1 25.45 ? C2' FAD 301 A 1 HETATM 43 O O2' FAD . . . B 2 -53.724 -14.606 25.78 1 24.25 ? O2' FAD 301 A 1 HETATM 44 C C3' FAD . . . B 2 -53.857 -13.615 28.014 1 22.88 ? C3' FAD 301 A 1 HETATM 45 O O3' FAD . . . B 2 -52.745 -12.768 27.703 1 24.7 ? O3' FAD 301 A 1 HETATM 46 C C4' FAD . . . B 2 -53.903 -13.818 29.518 1 26.41 ? C4' FAD 301 A 1 HETATM 47 O O4' FAD . . . B 2 -54.85 -14.824 29.76 1 25.46 ? O4' FAD 301 A 1 HETATM 48 C C5' FAD . . . B 2 -54.334 -12.536 30.229 1 27.17 ? C5' FAD 301 A 1 HETATM 49 O O5' FAD . . . B 2 -55.715 -12.319 29.976 1 26.52 ? O5' FAD 301 A 1 HETATM 50 P P FAD . . . B 2 -56.383 -10.855 29.863 1 25.06 ? P FAD 301 A 1 HETATM 51 O O1P FAD . . . B 2 -55.935 -10.167 28.596 1 23.76 ? O1P FAD 301 A 1 HETATM 52 O O2P FAD . . . B 2 -57.86 -11.011 30.02 1 24.16 ? O2P FAD 301 A 1 HETATM 53 O O3P FAD . . . B 2 -55.799 -10.091 31.161 1 22.97 ? O3P FAD 301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 53 #