data_4GTF
#
_model_server_result.job_id            ZJNp4HvnZYSN3wPL0pXYmA 
_model_server_result.datetime_utc      '2024-11-15 15:20:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4gtf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":303}' 
#
_entry.id    4GTF 
#
_exptl.entry_id    4GTF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              457.44 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'N-({4-[(6aR)-3-amino-1-oxo-1,2,5,6,6a,7-hexahydroimidazo[1,5-f]pteridin-8(9H)-yl]phenyl}carbonyl)-L-glutamic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4GTF 
_cell.length_a            109.81 
_cell.length_b            109.81 
_cell.length_c            122.29 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4GTF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        98 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 41 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_455 y-1/2,x+1/2,-z+1/2 0 1 0 1 0 0 0 0 -1 -54.905 54.905 61.145 
3 'crystal symmetry operation' 10_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -109.81 0 0 
4 'crystal symmetry operation' 16_445 -y-1/2,-x-1/2,-z+1/2 0 -1 0 -1 0 0 0 0 -1 -54.905 -54.905 61.145 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C20 H23 N7 O6' 
_chem_comp.formula_weight    457.44 
_chem_comp.id                MEF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'N-({4-[(6aR)-3-amino-1-oxo-1,2,5,6,6a,7-hexahydroimidazo[1,5-f]pteridin-8(9H)-yl]phenyl}carbonyl)-L-glutamic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     5,10-methylene,5,6,7,8-tetrahydrofolate 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OE2 CD MEF doub 309 n n 
CG CD MEF sing 310 n n 
CD OE1 MEF sing 311 n n 
OE1 HOE1 MEF sing 312 n n 
CB CG MEF sing 313 n n 
CG HG MEF sing 314 n n 
CG HGA MEF sing 315 n n 
CA CB MEF sing 316 n n 
CB HB MEF sing 317 n n 
CB HBA MEF sing 318 n n 
CA N MEF sing 319 n n 
CA CT MEF sing 320 n n 
CA HA MEF sing 321 n n 
O2 CT MEF doub 322 n n 
CT O1 MEF sing 323 n n 
O1 HO1 MEF sing 324 n n 
C N MEF sing 325 n n 
N HN MEF sing 326 n n 
O C MEF doub 327 n n 
C C11 MEF sing 328 n n 
CM N10 MEF sing 329 n n 
C9 N10 MEF sing 330 n n 
C14 N10 MEF sing 331 n n 
N5 CM MEF sing 332 n n 
CM HM MEF sing 333 n n 
CM HMA MEF sing 334 n n 
C4A N5 MEF sing 335 n n 
N5 C6 MEF sing 336 n n 
C6 C9 MEF sing 337 n n 
C9 H9 MEF sing 338 n n 
C9 H9A MEF sing 339 n n 
C7 C6 MEF sing 340 n n 
C6 H6 MEF sing 341 n n 
N8 C7 MEF sing 342 n n 
C7 H7 MEF sing 343 n n 
C7 H7A MEF sing 344 n n 
C8A N8 MEF sing 345 n n 
N8 HN8 MEF sing 346 n n 
N1 C8A MEF sing 347 n n 
C8A C4A MEF doub 348 n n 
C4 C4A MEF sing 349 n n 
C2 N1 MEF doub 350 n n 
NA2 C2 MEF sing 351 n n 
C2 N3 MEF sing 352 n n 
NA2 HNA2 MEF sing 353 n n 
NA2 HNAA MEF sing 354 n n 
N3 C4 MEF sing 355 n n 
N3 HN3 MEF sing 356 n n 
C4 O4 MEF doub 357 n n 
C16 C11 MEF doub 358 n y 
C11 C12 MEF sing 359 n y 
C12 C13 MEF doub 360 n y 
C12 H12 MEF sing 361 n n 
C14 C13 MEF sing 362 n y 
C13 H13 MEF sing 363 n n 
C16 C15 MEF sing 364 n y 
C16 H16 MEF sing 365 n n 
C15 C14 MEF doub 366 n y 
C15 H15 MEF sing 367 n n 
#
_atom_sites.entry_id                     4GTF 
_atom_sites.fract_transf_matrix[1][1]    0.009107 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009107 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008177 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FAD A 1 301 300 FAD FAD . 
C 3 UMP A 1 302 303 UMP UMP . 
D 4 MEF A 1 303 308 MEF MEF . 
E 5 CL A 1 304 310 CL CL . 
F 6 HOH A 1 401 1 HOH HOH . 
F 6 HOH A 2 402 2 HOH HOH . 
F 6 HOH A 3 403 3 HOH HOH . 
F 6 HOH A 4 404 4 HOH HOH . 
F 6 HOH A 5 405 5 HOH HOH . 
F 6 HOH A 6 406 6 HOH HOH . 
F 6 HOH A 7 407 7 HOH HOH . 
F 6 HOH A 8 408 8 HOH HOH . 
F 6 HOH A 9 409 9 HOH HOH . 
F 6 HOH A 10 410 10 HOH HOH . 
F 6 HOH A 11 411 11 HOH HOH . 
F 6 HOH A 12 412 12 HOH HOH . 
F 6 HOH A 13 413 13 HOH HOH . 
F 6 HOH A 14 414 14 HOH HOH . 
F 6 HOH A 15 415 15 HOH HOH . 
F 6 HOH A 16 416 16 HOH HOH . 
F 6 HOH A 17 417 17 HOH HOH . 
F 6 HOH A 18 418 18 HOH HOH . 
F 6 HOH A 19 419 19 HOH HOH . 
F 6 HOH A 20 420 20 HOH HOH . 
F 6 HOH A 21 421 21 HOH HOH . 
F 6 HOH A 22 422 22 HOH HOH . 
F 6 HOH A 23 423 23 HOH HOH . 
F 6 HOH A 24 424 24 HOH HOH . 
F 6 HOH A 25 425 25 HOH HOH . 
F 6 HOH A 26 426 26 HOH HOH . 
F 6 HOH A 27 427 27 HOH HOH . 
F 6 HOH A 28 428 28 HOH HOH . 
F 6 HOH A 29 429 29 HOH HOH . 
F 6 HOH A 30 430 30 HOH HOH . 
F 6 HOH A 31 431 31 HOH HOH . 
F 6 HOH A 32 432 32 HOH HOH . 
F 6 HOH A 33 433 33 HOH HOH . 
F 6 HOH A 34 434 34 HOH HOH . 
F 6 HOH A 35 435 35 HOH HOH . 
F 6 HOH A 36 436 36 HOH HOH . 
F 6 HOH A 37 437 37 HOH HOH . 
F 6 HOH A 38 438 38 HOH HOH . 
F 6 HOH A 39 439 39 HOH HOH . 
F 6 HOH A 40 440 40 HOH HOH . 
F 6 HOH A 41 441 41 HOH HOH . 
F 6 HOH A 42 442 42 HOH HOH . 
F 6 HOH A 43 443 43 HOH HOH . 
F 6 HOH A 44 444 44 HOH HOH . 
F 6 HOH A 45 445 45 HOH HOH . 
F 6 HOH A 46 446 46 HOH HOH . 
F 6 HOH A 47 447 47 HOH HOH . 
F 6 HOH A 48 448 48 HOH HOH . 
F 6 HOH A 49 449 49 HOH HOH . 
F 6 HOH A 50 450 50 HOH HOH . 
F 6 HOH A 51 451 51 HOH HOH . 
F 6 HOH A 52 452 52 HOH HOH . 
F 6 HOH A 53 453 53 HOH HOH . 
F 6 HOH A 54 454 54 HOH HOH . 
F 6 HOH A 55 455 55 HOH HOH . 
F 6 HOH A 56 456 56 HOH HOH . 
F 6 HOH A 57 457 57 HOH HOH . 
F 6 HOH A 58 458 58 HOH HOH . 
F 6 HOH A 59 459 59 HOH HOH . 
F 6 HOH A 60 460 60 HOH HOH . 
F 6 HOH A 61 461 61 HOH HOH . 
F 6 HOH A 62 462 62 HOH HOH . 
F 6 HOH A 63 463 63 HOH HOH . 
F 6 HOH A 64 464 64 HOH HOH . 
F 6 HOH A 65 465 65 HOH HOH . 
F 6 HOH A 66 466 66 HOH HOH . 
F 6 HOH A 67 467 67 HOH HOH . 
F 6 HOH A 68 468 68 HOH HOH . 
F 6 HOH A 69 469 69 HOH HOH . 
F 6 HOH A 70 470 70 HOH HOH . 
F 6 HOH A 71 471 71 HOH HOH . 
F 6 HOH A 72 472 72 HOH HOH . 
F 6 HOH A 73 473 73 HOH HOH . 
F 6 HOH A 74 474 74 HOH HOH . 
F 6 HOH A 75 475 75 HOH HOH . 
F 6 HOH A 76 476 76 HOH HOH . 
F 6 HOH A 77 477 77 HOH HOH . 
F 6 HOH A 78 478 78 HOH HOH . 
F 6 HOH A 79 479 79 HOH HOH . 
F 6 HOH A 80 480 80 HOH HOH . 
F 6 HOH A 81 481 81 HOH HOH . 
F 6 HOH A 82 482 82 HOH HOH . 
F 6 HOH A 83 483 83 HOH HOH . 
F 6 HOH A 84 484 84 HOH HOH . 
F 6 HOH A 85 485 85 HOH HOH . 
F 6 HOH A 86 486 86 HOH HOH . 
F 6 HOH A 87 487 87 HOH HOH . 
F 6 HOH A 88 488 88 HOH HOH . 
F 6 HOH A 89 489 89 HOH HOH . 
F 6 HOH A 90 490 90 HOH HOH . 
F 6 HOH A 91 491 91 HOH HOH . 
F 6 HOH A 92 492 92 HOH HOH . 
F 6 HOH A 93 493 93 HOH HOH . 
F 6 HOH A 94 494 94 HOH HOH . 
F 6 HOH A 95 495 95 HOH HOH . 
F 6 HOH A 96 496 96 HOH HOH . 
F 6 HOH A 97 497 97 HOH HOH . 
F 6 HOH A 98 498 98 HOH HOH . 
F 6 HOH A 99 499 99 HOH HOH . 
F 6 HOH A 100 500 100 HOH HOH . 
F 6 HOH A 101 501 101 HOH HOH . 
F 6 HOH A 102 502 102 HOH HOH . 
F 6 HOH A 103 503 103 HOH HOH . 
F 6 HOH A 104 504 104 HOH HOH . 
F 6 HOH A 105 505 105 HOH HOH . 
F 6 HOH A 106 506 106 HOH HOH . 
F 6 HOH A 107 507 107 HOH HOH . 
F 6 HOH A 108 508 108 HOH HOH . 
F 6 HOH A 109 509 109 HOH HOH . 
F 6 HOH A 110 510 110 HOH HOH . 
F 6 HOH A 111 511 111 HOH HOH . 
F 6 HOH A 112 512 112 HOH HOH . 
F 6 HOH A 113 513 113 HOH HOH . 
F 6 HOH A 114 514 114 HOH HOH . 
F 6 HOH A 115 515 115 HOH HOH . 
F 6 HOH A 116 516 116 HOH HOH . 
F 6 HOH A 117 517 117 HOH HOH . 
F 6 HOH A 118 518 118 HOH HOH . 
F 6 HOH A 119 519 119 HOH HOH . 
F 6 HOH A 120 520 120 HOH HOH . 
F 6 HOH A 121 521 121 HOH HOH . 
F 6 HOH A 122 522 122 HOH HOH . 
F 6 HOH A 123 523 123 HOH HOH . 
F 6 HOH A 124 524 124 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N MEF . . . D 4 -55.871 -24.578 16.487 1 43.22 ? N MEF 303 A 1 
HETATM 2 C C MEF . . . D 4 -55.092 -23.507 16.353 1 45.19 ? C MEF 303 A 1 
HETATM 3 O O MEF . . . D 4 -54.245 -23.458 15.469 1 49.98 ? O MEF 303 A 1 
HETATM 4 N N10 MEF . . . D 4 -54.644 -20.179 21.007 1 35.15 ? N10 MEF 303 A 1 
HETATM 5 C CM MEF . . . D 4 -55.696 -20.016 22.006 1 34.4 ? CM MEF 303 A 1 
HETATM 6 N N5 MEF . . . D 4 -54.842 -19.535 23.122 1 31.87 ? N5 MEF 303 A 1 
HETATM 7 C C9 MEF . . . D 4 -53.813 -18.993 21.024 1 34.26 ? C9 MEF 303 A 1 
HETATM 8 C C6 MEF . . . D 4 -53.958 -18.545 22.499 1 31.04 ? C6 MEF 303 A 1 
HETATM 9 C C7 MEF . . . D 4 -54.509 -17.119 22.491 1 30.33 ? C7 MEF 303 A 1 
HETATM 10 N N8 MEF . . . D 4 -54.868 -16.809 23.859 1 32.04 ? N8 MEF 303 A 1 
HETATM 11 C C8A MEF . . . D 4 -55.481 -17.721 24.626 1 29.6 ? C8A MEF 303 A 1 
HETATM 12 C C4A MEF . . . D 4 -55.534 -19.056 24.27 1 29.79 ? C4A MEF 303 A 1 
HETATM 13 N N1 MEF . . . D 4 -56.13 -17.267 25.727 1 28.78 ? N1 MEF 303 A 1 
HETATM 14 C C2 MEF . . . D 4 -56.776 -18.117 26.522 1 30.49 ? C2 MEF 303 A 1 
HETATM 15 N NA2 MEF . . . D 4 -57.39 -17.591 27.597 1 29 ? NA2 MEF 303 A 1 
HETATM 16 N N3 MEF . . . D 4 -56.854 -19.427 26.209 1 31.47 ? N3 MEF 303 A 1 
HETATM 17 C C4 MEF . . . D 4 -56.212 -19.897 25.127 1 34.49 ? C4 MEF 303 A 1 
HETATM 18 O O4 MEF . . . D 4 -56.31 -21.208 24.883 1 35.6 ? O4 MEF 303 A 1 
HETATM 19 C C11 MEF . . . D 4 -54.963 -22.615 17.597 1 39.3 ? C11 MEF 303 A 1 
HETATM 20 C C12 MEF . . . D 4 -55.857 -22.784 18.645 1 41.74 ? C12 MEF 303 A 1 
HETATM 21 C C13 MEF . . . D 4 -55.778 -21.966 19.777 1 40.8 ? C13 MEF 303 A 1 
HETATM 22 C C16 MEF . . . D 4 -54.004 -21.631 17.67 1 41.64 ? C16 MEF 303 A 1 
HETATM 23 C C15 MEF . . . D 4 -53.928 -20.808 18.801 1 36.69 ? C15 MEF 303 A 1 
HETATM 24 C C14 MEF . . . D 4 -54.825 -20.957 19.825 1 37.8 ? C14 MEF 303 A 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           458 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           24 
#