data_4GTL # _model_server_result.job_id Bme3EE7dtJKLvzEY9Ytp-Q _model_server_result.datetime_utc '2024-11-27 21:01:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gtl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 4GTL # _exptl.entry_id 4GTL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4GTL _cell.length_a 53.78 _cell.length_b 116.46 _cell.length_c 141.19 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GTL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 4GTL _atom_sites.fract_transf_matrix[1][1] 0.018594 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008587 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007083 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FAD B 1 301 310 FAD FAD . F 2 FAD C 1 301 315 FAD FAD . G 2 FAD D 1 300 300 FAD FAD . H 3 HOH A 1 301 3 HOH HOH . H 3 HOH A 2 302 9 HOH HOH . H 3 HOH A 3 303 10 HOH HOH . H 3 HOH A 4 304 13 HOH HOH . H 3 HOH A 5 305 17 HOH HOH . H 3 HOH A 6 306 18 HOH HOH . H 3 HOH A 7 307 21 HOH HOH . H 3 HOH A 8 308 26 HOH HOH . H 3 HOH A 9 309 36 HOH HOH . H 3 HOH A 10 310 42 HOH HOH . H 3 HOH A 11 311 46 HOH HOH . H 3 HOH A 12 312 47 HOH HOH . H 3 HOH A 13 313 50 HOH HOH . H 3 HOH A 14 314 52 HOH HOH . H 3 HOH A 15 315 56 HOH HOH . H 3 HOH A 16 316 60 HOH HOH . H 3 HOH A 17 317 61 HOH HOH . H 3 HOH A 18 318 65 HOH HOH . H 3 HOH A 19 319 71 HOH HOH . H 3 HOH A 20 320 77 HOH HOH . H 3 HOH A 21 321 81 HOH HOH . I 3 HOH B 1 401 12 HOH HOH . I 3 HOH B 2 402 23 HOH HOH . I 3 HOH B 3 403 29 HOH HOH . I 3 HOH B 4 404 31 HOH HOH . I 3 HOH B 5 405 32 HOH HOH . I 3 HOH B 6 406 35 HOH HOH . I 3 HOH B 7 407 37 HOH HOH . I 3 HOH B 8 408 45 HOH HOH . I 3 HOH B 9 409 55 HOH HOH . I 3 HOH B 10 410 59 HOH HOH . I 3 HOH B 11 411 62 HOH HOH . I 3 HOH B 12 412 63 HOH HOH . I 3 HOH B 13 413 64 HOH HOH . I 3 HOH B 14 414 66 HOH HOH . I 3 HOH B 15 415 67 HOH HOH . I 3 HOH B 16 416 73 HOH HOH . I 3 HOH B 17 417 75 HOH HOH . I 3 HOH B 18 418 78 HOH HOH . I 3 HOH B 19 419 79 HOH HOH . J 3 HOH C 1 401 2 HOH HOH . J 3 HOH C 2 402 4 HOH HOH . J 3 HOH C 3 403 11 HOH HOH . J 3 HOH C 4 404 15 HOH HOH . J 3 HOH C 5 405 16 HOH HOH . J 3 HOH C 6 406 20 HOH HOH . J 3 HOH C 7 407 22 HOH HOH . J 3 HOH C 8 408 24 HOH HOH . J 3 HOH C 9 409 28 HOH HOH . J 3 HOH C 10 410 33 HOH HOH . J 3 HOH C 11 411 34 HOH HOH . J 3 HOH C 12 412 38 HOH HOH . J 3 HOH C 13 413 39 HOH HOH . J 3 HOH C 14 414 40 HOH HOH . J 3 HOH C 15 415 41 HOH HOH . J 3 HOH C 16 416 51 HOH HOH . J 3 HOH C 17 417 53 HOH HOH . J 3 HOH C 18 418 57 HOH HOH . J 3 HOH C 19 419 58 HOH HOH . J 3 HOH C 20 420 68 HOH HOH . J 3 HOH C 21 421 70 HOH HOH . J 3 HOH C 22 422 72 HOH HOH . J 3 HOH C 23 423 74 HOH HOH . J 3 HOH C 24 424 76 HOH HOH . J 3 HOH C 25 425 80 HOH HOH . K 3 HOH D 1 401 1 HOH HOH . K 3 HOH D 2 402 5 HOH HOH . K 3 HOH D 3 403 6 HOH HOH . K 3 HOH D 4 404 7 HOH HOH . K 3 HOH D 5 405 8 HOH HOH . K 3 HOH D 6 406 14 HOH HOH . K 3 HOH D 7 407 19 HOH HOH . K 3 HOH D 8 408 25 HOH HOH . K 3 HOH D 9 409 27 HOH HOH . K 3 HOH D 10 410 30 HOH HOH . K 3 HOH D 11 411 43 HOH HOH . K 3 HOH D 12 412 44 HOH HOH . K 3 HOH D 13 413 48 HOH HOH . K 3 HOH D 14 414 49 HOH HOH . K 3 HOH D 15 415 54 HOH HOH . K 3 HOH D 16 416 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . E 2 40.35 40.658 109.696 1 63.93 ? PA FAD 301 B 1 HETATM 2 O O1A FAD . . . E 2 40.155 42.148 109.076 1 46.9 ? O1A FAD 301 B 1 HETATM 3 O O2A FAD . . . E 2 39.282 39.56 109.505 1 39.74 ? O2A FAD 301 B 1 HETATM 4 O O5B FAD . . . E 2 40.738 40.838 111.258 1 65.11 ? O5B FAD 301 B 1 HETATM 5 C C5B FAD . . . E 2 41.863 41.721 111.552 1 69.04 ? C5B FAD 301 B 1 HETATM 6 C C4B FAD . . . E 2 42.232 41.847 113.039 1 71.33 ? C4B FAD 301 B 1 HETATM 7 O O4B FAD . . . E 2 41.015 41.742 113.775 1 70.64 ? O4B FAD 301 B 1 HETATM 8 C C3B FAD . . . E 2 43.226 40.815 113.623 1 73.89 ? C3B FAD 301 B 1 HETATM 9 O O3B FAD . . . E 2 44.442 41.433 114.148 1 76 ? O3B FAD 301 B 1 HETATM 10 C C2B FAD . . . E 2 42.456 40.075 114.723 1 69.25 ? C2B FAD 301 B 1 HETATM 11 O O2B FAD . . . E 2 43.178 40.229 115.96 1 68.57 ? O2B FAD 301 B 1 HETATM 12 C C1B FAD . . . E 2 41.074 40.738 114.791 1 63.83 ? C1B FAD 301 B 1 HETATM 13 N N9A FAD . . . E 2 39.817 39.983 114.578 1 60.42 ? N9A FAD 301 B 1 HETATM 14 C C8A FAD . . . E 2 38.829 40.324 113.696 1 58.98 ? C8A FAD 301 B 1 HETATM 15 N N7A FAD . . . E 2 37.761 39.502 113.791 1 58.31 ? N7A FAD 301 B 1 HETATM 16 C C5A FAD . . . E 2 38.06 38.618 114.787 1 63.23 ? C5A FAD 301 B 1 HETATM 17 C C6A FAD . . . E 2 37.418 37.525 115.374 1 62.35 ? C6A FAD 301 B 1 HETATM 18 N N6A FAD . . . E 2 36.187 37.147 114.932 1 62.32 ? N6A FAD 301 B 1 HETATM 19 N N1A FAD . . . E 2 38.05 36.847 116.391 1 59.34 ? N1A FAD 301 B 1 HETATM 20 C C2A FAD . . . E 2 39.282 37.19 116.848 1 61.78 ? C2A FAD 301 B 1 HETATM 21 N N3A FAD . . . E 2 39.969 38.227 116.34 1 66.87 ? N3A FAD 301 B 1 HETATM 22 C C4A FAD . . . E 2 39.414 38.953 115.311 1 64.95 ? C4A FAD 301 B 1 HETATM 23 C C1' FAD . . . E 2 43.937 33.99 104.948 1 70.28 ? C1' FAD 301 B 1 HETATM 24 C C2' FAD . . . E 2 43.973 34.062 106.468 1 74.1 ? C2' FAD 301 B 1 HETATM 25 O O2' FAD . . . E 2 43.651 32.745 106.956 1 68.23 ? O2' FAD 301 B 1 HETATM 26 C C3' FAD . . . E 2 43.037 35.126 107.108 1 76.41 ? C3' FAD 301 B 1 HETATM 27 O O3' FAD . . . E 2 41.718 34.619 107.273 1 80.64 ? O3' FAD 301 B 1 HETATM 28 C C4' FAD . . . E 2 42.816 36.429 106.346 1 79.03 ? C4' FAD 301 B 1 HETATM 29 O O4' FAD . . . E 2 44.017 36.839 105.681 1 84.67 ? O4' FAD 301 B 1 HETATM 30 C C5' FAD . . . E 2 42.246 37.527 107.271 1 81.97 ? C5' FAD 301 B 1 HETATM 31 O O5' FAD . . . E 2 43.122 37.941 108.342 1 82.26 ? O5' FAD 301 B 1 HETATM 32 P P FAD . . . E 2 42.627 38.713 109.71 1 72.77 ? P FAD 301 B 1 HETATM 33 O O1P FAD . . . E 2 41.716 37.739 110.425 1 63.69 ? O1P FAD 301 B 1 HETATM 34 O O2P FAD . . . E 2 43.924 39.205 110.358 1 60.38 ? O2P FAD 301 B 1 HETATM 35 O O3P FAD . . . E 2 41.798 40.043 109.206 1 59.42 ? O3P FAD 301 B 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 35 #