data_4GTP
#
_model_server_result.job_id            RKWhwzk59NpmPOQF6SWjvw 
_model_server_result.datetime_utc      '2024-11-06 01:37:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4gtp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":502}' 
#
_entry.id    4GTP 
#
_exptl.entry_id    4GTP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              382.326 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FARNESYL DIPHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4GTP 
_cell.length_a            171.65 
_cell.length_b            171.65 
_cell.length_c            70.005 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4GTP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B OD2 ASP 297 B ASP 297 1_555 D ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
metalc ? metalc2 B OD1 ASP 297 B ASP 297 1_555 D ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? 
metalc ? metalc3 B SG CYS 299 B CYS 299 1_555 D ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? 
metalc ? metalc4 B NE2 HIS 362 B HIS 362 1_555 D ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? 
metalc ? metalc5 D ZN ZN . B ZN 501 1_555 F NBA 7TP . B 7TP 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? 
#
_chem_comp.formula           'C15 H28 O7 P2' 
_chem_comp.formula_weight    382.326 
_chem_comp.id                FPP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FARNESYL DIPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 FPP sing 173 n n 
C1 C2 FPP sing 174 n n 
C1 H11 FPP sing 175 n n 
C1 H12A FPP sing 176 n n 
O1 PA FPP sing 177 n n 
C2 C3 FPP doub 178 e n 
C2 H2 FPP sing 179 n n 
C3 C4 FPP sing 180 n n 
C3 C5 FPP sing 181 n n 
C4 H41 FPP sing 182 n n 
C4 H42 FPP sing 183 n n 
C4 H43 FPP sing 184 n n 
C5 C6 FPP sing 185 n n 
C5 H51 FPP sing 186 n n 
C5 H52 FPP sing 187 n n 
C6 C7 FPP sing 188 n n 
C6 H61 FPP sing 189 n n 
C6 H62 FPP sing 190 n n 
C7 C8 FPP doub 191 e n 
C7 H7 FPP sing 192 n n 
C8 C10 FPP sing 193 n n 
C8 C9 FPP sing 194 n n 
C10 H101 FPP sing 195 n n 
C10 H102 FPP sing 196 n n 
C10 H103 FPP sing 197 n n 
C9 C11 FPP sing 198 n n 
C9 H91 FPP sing 199 n n 
C9 H92 FPP sing 200 n n 
C11 C12 FPP sing 201 n n 
C11 H111 FPP sing 202 n n 
C11 H112 FPP sing 203 n n 
C12 C13 FPP doub 204 n n 
C12 H12 FPP sing 205 n n 
C13 C14 FPP sing 206 n n 
C13 C15 FPP sing 207 n n 
C14 H141 FPP sing 208 n n 
C14 H142 FPP sing 209 n n 
C14 H143 FPP sing 210 n n 
C15 H151 FPP sing 211 n n 
C15 H152 FPP sing 212 n n 
C15 H153 FPP sing 213 n n 
PA O1A FPP doub 214 n n 
PA O2A FPP sing 215 n n 
PA O3A FPP sing 216 n n 
O2A HOA2 FPP sing 217 n n 
O3A PB FPP sing 218 n n 
PB O1B FPP doub 219 n n 
PB O2B FPP sing 220 n n 
PB O3B FPP sing 221 n n 
O2B HOB2 FPP sing 222 n n 
O3B HOB3 FPP sing 223 n n 
#
_atom_sites.entry_id                     4GTP 
_atom_sites.fract_transf_matrix[1][1]    0.005826 
_atom_sites.fract_transf_matrix[1][2]    0.003364 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006727 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014285 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 DMS A 1 401 1 DMS DMS . 
D 4 ZN B 1 501 1 ZN ZN . 
E 5 FPP B 1 502 1 FPP C2 . 
F 6 7TP B 1 503 1 7TP DRG . 
G 3 DMS B 1 504 2 DMS DMS . 
H 3 DMS B 1 505 3 DMS DMS . 
I 3 DMS B 1 506 4 DMS DMS . 
J 7 HOH A 1 501 2 HOH HOH . 
J 7 HOH A 2 502 3 HOH HOH . 
J 7 HOH A 3 503 6 HOH HOH . 
J 7 HOH A 4 504 8 HOH HOH . 
J 7 HOH A 5 505 11 HOH HOH . 
J 7 HOH A 6 506 12 HOH HOH . 
J 7 HOH A 7 507 13 HOH HOH . 
J 7 HOH A 8 508 18 HOH HOH . 
J 7 HOH A 9 509 19 HOH HOH . 
J 7 HOH A 10 510 24 HOH HOH . 
J 7 HOH A 11 511 27 HOH HOH . 
J 7 HOH A 12 512 29 HOH HOH . 
J 7 HOH A 13 513 32 HOH HOH . 
J 7 HOH A 14 514 34 HOH HOH . 
J 7 HOH A 15 515 43 HOH HOH . 
J 7 HOH A 16 516 44 HOH HOH . 
J 7 HOH A 17 517 45 HOH HOH . 
J 7 HOH A 18 518 46 HOH HOH . 
J 7 HOH A 19 519 48 HOH HOH . 
J 7 HOH A 20 520 51 HOH HOH . 
J 7 HOH A 21 521 53 HOH HOH . 
J 7 HOH A 22 522 55 HOH HOH . 
J 7 HOH A 23 523 60 HOH HOH . 
J 7 HOH A 24 524 62 HOH HOH . 
J 7 HOH A 25 525 63 HOH HOH . 
J 7 HOH A 26 526 65 HOH HOH . 
J 7 HOH A 27 527 66 HOH HOH . 
J 7 HOH A 28 528 69 HOH HOH . 
J 7 HOH A 29 529 70 HOH HOH . 
J 7 HOH A 30 530 72 HOH HOH . 
J 7 HOH A 31 531 74 HOH HOH . 
J 7 HOH A 32 532 76 HOH HOH . 
J 7 HOH A 33 533 77 HOH HOH . 
J 7 HOH A 34 534 78 HOH HOH . 
J 7 HOH A 35 535 79 HOH HOH . 
J 7 HOH A 36 536 81 HOH HOH . 
J 7 HOH A 37 537 82 HOH HOH . 
J 7 HOH A 38 538 84 HOH HOH . 
J 7 HOH A 39 539 85 HOH HOH . 
J 7 HOH A 40 540 89 HOH HOH . 
J 7 HOH A 41 541 92 HOH HOH . 
J 7 HOH A 42 542 94 HOH HOH . 
J 7 HOH A 43 543 95 HOH HOH . 
J 7 HOH A 44 544 98 HOH HOH . 
J 7 HOH A 45 545 101 HOH HOH . 
J 7 HOH A 46 546 102 HOH HOH . 
J 7 HOH A 47 547 107 HOH HOH . 
J 7 HOH A 48 548 108 HOH HOH . 
J 7 HOH A 49 549 109 HOH HOH . 
J 7 HOH A 50 550 110 HOH HOH . 
J 7 HOH A 51 551 111 HOH HOH . 
J 7 HOH A 52 552 120 HOH HOH . 
J 7 HOH A 53 553 124 HOH HOH . 
J 7 HOH A 54 554 125 HOH HOH . 
J 7 HOH A 55 555 127 HOH HOH . 
J 7 HOH A 56 556 132 HOH HOH . 
J 7 HOH A 57 557 136 HOH HOH . 
K 7 HOH B 1 601 1 HOH HOH . 
K 7 HOH B 2 602 4 HOH HOH . 
K 7 HOH B 3 603 5 HOH HOH . 
K 7 HOH B 4 604 7 HOH HOH . 
K 7 HOH B 5 605 9 HOH HOH . 
K 7 HOH B 6 606 14 HOH HOH . 
K 7 HOH B 7 607 16 HOH HOH . 
K 7 HOH B 8 608 17 HOH HOH . 
K 7 HOH B 9 609 20 HOH HOH . 
K 7 HOH B 10 610 21 HOH HOH . 
K 7 HOH B 11 611 22 HOH HOH . 
K 7 HOH B 12 612 23 HOH HOH . 
K 7 HOH B 13 613 25 HOH HOH . 
K 7 HOH B 14 614 26 HOH HOH . 
K 7 HOH B 15 615 28 HOH HOH . 
K 7 HOH B 16 616 30 HOH HOH . 
K 7 HOH B 17 617 31 HOH HOH . 
K 7 HOH B 18 618 33 HOH HOH . 
K 7 HOH B 19 619 35 HOH HOH . 
K 7 HOH B 20 620 37 HOH HOH . 
K 7 HOH B 21 621 38 HOH HOH . 
K 7 HOH B 22 622 39 HOH HOH . 
K 7 HOH B 23 623 40 HOH HOH . 
K 7 HOH B 24 624 41 HOH HOH . 
K 7 HOH B 25 625 42 HOH HOH . 
K 7 HOH B 26 626 47 HOH HOH . 
K 7 HOH B 27 627 49 HOH HOH . 
K 7 HOH B 28 628 50 HOH HOH . 
K 7 HOH B 29 629 52 HOH HOH . 
K 7 HOH B 30 630 54 HOH HOH . 
K 7 HOH B 31 631 56 HOH HOH . 
K 7 HOH B 32 632 58 HOH HOH . 
K 7 HOH B 33 633 59 HOH HOH . 
K 7 HOH B 34 634 61 HOH HOH . 
K 7 HOH B 35 635 64 HOH HOH . 
K 7 HOH B 36 636 67 HOH HOH . 
K 7 HOH B 37 637 71 HOH HOH . 
K 7 HOH B 38 638 73 HOH HOH . 
K 7 HOH B 39 639 75 HOH HOH . 
K 7 HOH B 40 640 80 HOH HOH . 
K 7 HOH B 41 641 86 HOH HOH . 
K 7 HOH B 42 642 87 HOH HOH . 
K 7 HOH B 43 643 88 HOH HOH . 
K 7 HOH B 44 644 90 HOH HOH . 
K 7 HOH B 45 645 91 HOH HOH . 
K 7 HOH B 46 646 93 HOH HOH . 
K 7 HOH B 47 647 96 HOH HOH . 
K 7 HOH B 48 648 97 HOH HOH . 
K 7 HOH B 49 649 100 HOH HOH . 
K 7 HOH B 50 650 104 HOH HOH . 
K 7 HOH B 51 651 105 HOH HOH . 
K 7 HOH B 52 652 106 HOH HOH . 
K 7 HOH B 53 653 112 HOH HOH . 
K 7 HOH B 54 654 113 HOH HOH . 
K 7 HOH B 55 655 114 HOH HOH . 
K 7 HOH B 56 656 115 HOH HOH . 
K 7 HOH B 57 657 116 HOH HOH . 
K 7 HOH B 58 658 117 HOH HOH . 
K 7 HOH B 59 659 118 HOH HOH . 
K 7 HOH B 60 660 119 HOH HOH . 
K 7 HOH B 61 661 121 HOH HOH . 
K 7 HOH B 62 662 122 HOH HOH . 
K 7 HOH B 63 663 123 HOH HOH . 
K 7 HOH B 64 664 126 HOH HOH . 
K 7 HOH B 65 665 128 HOH HOH . 
K 7 HOH B 66 666 129 HOH HOH . 
K 7 HOH B 67 667 130 HOH HOH . 
K 7 HOH B 68 668 131 HOH HOH . 
K 7 HOH B 69 669 133 HOH HOH . 
K 7 HOH B 70 670 134 HOH HOH . 
K 7 HOH B 71 671 135 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 FPP . . . E 5 52.988 42.567 -1.877 1 41.62 ? C1 FPP 502 B 1 
HETATM 2 O O1 FPP . . . E 5 52.072 43.168 -2.871 1 38.25 ? O1 FPP 502 B 1 
HETATM 3 C C2 FPP . . . E 5 54.147 43.338 -1.712 1 40.91 ? C2 FPP 502 B 1 
HETATM 4 C C3 FPP . . . E 5 54.671 43.895 -0.548 1 41.3 ? C3 FPP 502 B 1 
HETATM 5 C C4 FPP . . . E 5 54.01 43.682 0.812 1 42.22 ? C4 FPP 502 B 1 
HETATM 6 C C5 FPP . . . E 5 55.978 44.709 -0.562 1 43.43 ? C5 FPP 502 B 1 
HETATM 7 C C6 FPP . . . E 5 56.606 45.182 -1.955 1 41.22 ? C6 FPP 502 B 1 
HETATM 8 C C7 FPP . . . E 5 57.719 46.037 -1.736 1 36.73 ? C7 FPP 502 B 1 
HETATM 9 C C8 FPP . . . E 5 58.335 46.936 -2.584 1 31.44 ? C8 FPP 502 B 1 
HETATM 10 C C10 FPP . . . E 5 57.822 47.043 -4.01 1 30.27 ? C10 FPP 502 B 1 
HETATM 11 C C9 FPP . . . E 5 59.544 47.714 -2.067 1 26.39 ? C9 FPP 502 B 1 
HETATM 12 C C11 FPP . . . E 5 59.369 49.219 -2.006 1 29.43 ? C11 FPP 502 B 1 
HETATM 13 C C12 FPP . . . E 5 60.601 49.928 -1.951 1 33.38 ? C12 FPP 502 B 1 
HETATM 14 C C13 FPP . . . E 5 61.037 50.855 -0.995 1 37.19 ? C13 FPP 502 B 1 
HETATM 15 C C14 FPP . . . E 5 62.37 51.546 -1.101 1 35.2 ? C14 FPP 502 B 1 
HETATM 16 C C15 FPP . . . E 5 60.142 51.191 0.196 1 38.91 ? C15 FPP 502 B 1 
HETATM 17 P PA FPP . . . E 5 50.942 42.264 -3.573 1 42.23 ? PA FPP 502 B 1 
HETATM 18 O O1A FPP . . . E 5 49.646 43.018 -3.655 1 40.31 ? O1A FPP 502 B 1 
HETATM 19 O O2A FPP . . . E 5 50.965 40.918 -2.921 1 44.71 ? O2A FPP 502 B 1 
HETATM 20 O O3A FPP . . . E 5 51.574 42.197 -5.045 1 42.9 ? O3A FPP 502 B 1 
HETATM 21 P PB FPP . . . E 5 52.062 40.955 -5.856 1 37.19 ? PB FPP 502 B 1 
HETATM 22 O O1B FPP . . . E 5 53.04 40.369 -4.828 1 44.57 ? O1B FPP 502 B 1 
HETATM 23 O O2B FPP . . . E 5 50.921 39.952 -5.995 1 41.21 ? O2B FPP 502 B 1 
HETATM 24 O O3B FPP . . . E 5 52.673 41.392 -7.103 1 45.42 ? O3B FPP 502 B 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           24 
#