data_4GTP # _model_server_result.job_id Pv397EezzceUanRFNwwl6g _model_server_result.datetime_utc '2024-11-06 01:28:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gtp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":505}' # _entry.id 4GTP # _exptl.entry_id 4GTP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4GTP _cell.length_a 171.65 _cell.length_b 171.65 _cell.length_c 70.005 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GTP _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 G N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OD2 ASP 297 B ASP 297 1_555 D ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc2 B OD1 ASP 297 B ASP 297 1_555 D ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc3 B SG CYS 299 B CYS 299 1_555 D ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc4 B NE2 HIS 362 B HIS 362 1_555 D ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc5 D ZN ZN . B ZN 501 1_555 F NBA 7TP . B 7TP 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 164 n n S C1 DMS sing 165 n n S C2 DMS sing 166 n n C1 H11 DMS sing 167 n n C1 H12 DMS sing 168 n n C1 H13 DMS sing 169 n n C2 H21 DMS sing 170 n n C2 H22 DMS sing 171 n n C2 H23 DMS sing 172 n n # _atom_sites.entry_id 4GTP _atom_sites.fract_transf_matrix[1][1] 0.005826 _atom_sites.fract_transf_matrix[1][2] 0.003364 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006727 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014285 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 DMS A 1 401 1 DMS DMS . D 4 ZN B 1 501 1 ZN ZN . E 5 FPP B 1 502 1 FPP C2 . F 6 7TP B 1 503 1 7TP DRG . G 3 DMS B 1 504 2 DMS DMS . H 3 DMS B 1 505 3 DMS DMS . I 3 DMS B 1 506 4 DMS DMS . J 7 HOH A 1 501 2 HOH HOH . J 7 HOH A 2 502 3 HOH HOH . J 7 HOH A 3 503 6 HOH HOH . J 7 HOH A 4 504 8 HOH HOH . J 7 HOH A 5 505 11 HOH HOH . J 7 HOH A 6 506 12 HOH HOH . J 7 HOH A 7 507 13 HOH HOH . J 7 HOH A 8 508 18 HOH HOH . J 7 HOH A 9 509 19 HOH HOH . J 7 HOH A 10 510 24 HOH HOH . J 7 HOH A 11 511 27 HOH HOH . J 7 HOH A 12 512 29 HOH HOH . J 7 HOH A 13 513 32 HOH HOH . J 7 HOH A 14 514 34 HOH HOH . J 7 HOH A 15 515 43 HOH HOH . J 7 HOH A 16 516 44 HOH HOH . J 7 HOH A 17 517 45 HOH HOH . J 7 HOH A 18 518 46 HOH HOH . J 7 HOH A 19 519 48 HOH HOH . J 7 HOH A 20 520 51 HOH HOH . J 7 HOH A 21 521 53 HOH HOH . J 7 HOH A 22 522 55 HOH HOH . J 7 HOH A 23 523 60 HOH HOH . J 7 HOH A 24 524 62 HOH HOH . J 7 HOH A 25 525 63 HOH HOH . J 7 HOH A 26 526 65 HOH HOH . J 7 HOH A 27 527 66 HOH HOH . J 7 HOH A 28 528 69 HOH HOH . J 7 HOH A 29 529 70 HOH HOH . J 7 HOH A 30 530 72 HOH HOH . J 7 HOH A 31 531 74 HOH HOH . J 7 HOH A 32 532 76 HOH HOH . J 7 HOH A 33 533 77 HOH HOH . J 7 HOH A 34 534 78 HOH HOH . J 7 HOH A 35 535 79 HOH HOH . J 7 HOH A 36 536 81 HOH HOH . J 7 HOH A 37 537 82 HOH HOH . J 7 HOH A 38 538 84 HOH HOH . J 7 HOH A 39 539 85 HOH HOH . J 7 HOH A 40 540 89 HOH HOH . J 7 HOH A 41 541 92 HOH HOH . J 7 HOH A 42 542 94 HOH HOH . J 7 HOH A 43 543 95 HOH HOH . J 7 HOH A 44 544 98 HOH HOH . J 7 HOH A 45 545 101 HOH HOH . J 7 HOH A 46 546 102 HOH HOH . J 7 HOH A 47 547 107 HOH HOH . J 7 HOH A 48 548 108 HOH HOH . J 7 HOH A 49 549 109 HOH HOH . J 7 HOH A 50 550 110 HOH HOH . J 7 HOH A 51 551 111 HOH HOH . J 7 HOH A 52 552 120 HOH HOH . J 7 HOH A 53 553 124 HOH HOH . J 7 HOH A 54 554 125 HOH HOH . J 7 HOH A 55 555 127 HOH HOH . J 7 HOH A 56 556 132 HOH HOH . J 7 HOH A 57 557 136 HOH HOH . K 7 HOH B 1 601 1 HOH HOH . K 7 HOH B 2 602 4 HOH HOH . K 7 HOH B 3 603 5 HOH HOH . K 7 HOH B 4 604 7 HOH HOH . K 7 HOH B 5 605 9 HOH HOH . K 7 HOH B 6 606 14 HOH HOH . K 7 HOH B 7 607 16 HOH HOH . K 7 HOH B 8 608 17 HOH HOH . K 7 HOH B 9 609 20 HOH HOH . K 7 HOH B 10 610 21 HOH HOH . K 7 HOH B 11 611 22 HOH HOH . K 7 HOH B 12 612 23 HOH HOH . K 7 HOH B 13 613 25 HOH HOH . K 7 HOH B 14 614 26 HOH HOH . K 7 HOH B 15 615 28 HOH HOH . K 7 HOH B 16 616 30 HOH HOH . K 7 HOH B 17 617 31 HOH HOH . K 7 HOH B 18 618 33 HOH HOH . K 7 HOH B 19 619 35 HOH HOH . K 7 HOH B 20 620 37 HOH HOH . K 7 HOH B 21 621 38 HOH HOH . K 7 HOH B 22 622 39 HOH HOH . K 7 HOH B 23 623 40 HOH HOH . K 7 HOH B 24 624 41 HOH HOH . K 7 HOH B 25 625 42 HOH HOH . K 7 HOH B 26 626 47 HOH HOH . K 7 HOH B 27 627 49 HOH HOH . K 7 HOH B 28 628 50 HOH HOH . K 7 HOH B 29 629 52 HOH HOH . K 7 HOH B 30 630 54 HOH HOH . K 7 HOH B 31 631 56 HOH HOH . K 7 HOH B 32 632 58 HOH HOH . K 7 HOH B 33 633 59 HOH HOH . K 7 HOH B 34 634 61 HOH HOH . K 7 HOH B 35 635 64 HOH HOH . K 7 HOH B 36 636 67 HOH HOH . K 7 HOH B 37 637 71 HOH HOH . K 7 HOH B 38 638 73 HOH HOH . K 7 HOH B 39 639 75 HOH HOH . K 7 HOH B 40 640 80 HOH HOH . K 7 HOH B 41 641 86 HOH HOH . K 7 HOH B 42 642 87 HOH HOH . K 7 HOH B 43 643 88 HOH HOH . K 7 HOH B 44 644 90 HOH HOH . K 7 HOH B 45 645 91 HOH HOH . K 7 HOH B 46 646 93 HOH HOH . K 7 HOH B 47 647 96 HOH HOH . K 7 HOH B 48 648 97 HOH HOH . K 7 HOH B 49 649 100 HOH HOH . K 7 HOH B 50 650 104 HOH HOH . K 7 HOH B 51 651 105 HOH HOH . K 7 HOH B 52 652 106 HOH HOH . K 7 HOH B 53 653 112 HOH HOH . K 7 HOH B 54 654 113 HOH HOH . K 7 HOH B 55 655 114 HOH HOH . K 7 HOH B 56 656 115 HOH HOH . K 7 HOH B 57 657 116 HOH HOH . K 7 HOH B 58 658 117 HOH HOH . K 7 HOH B 59 659 118 HOH HOH . K 7 HOH B 60 660 119 HOH HOH . K 7 HOH B 61 661 121 HOH HOH . K 7 HOH B 62 662 122 HOH HOH . K 7 HOH B 63 663 123 HOH HOH . K 7 HOH B 64 664 126 HOH HOH . K 7 HOH B 65 665 128 HOH HOH . K 7 HOH B 66 666 129 HOH HOH . K 7 HOH B 67 667 130 HOH HOH . K 7 HOH B 68 668 131 HOH HOH . K 7 HOH B 69 669 133 HOH HOH . K 7 HOH B 70 670 134 HOH HOH . K 7 HOH B 71 671 135 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . H 3 47.354 53.198 0.704 1 80.24 ? S DMS 505 B 1 HETATM 2 O O DMS . . . H 3 47.934 51.576 1.273 1 78.69 ? O DMS 505 B 1 HETATM 3 C C1 DMS . . . H 3 46.417 54.041 2.046 1 83.9 ? C1 DMS 505 B 1 HETATM 4 C C2 DMS . . . H 3 48.755 54.35 0.465 1 77.06 ? C2 DMS 505 B 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #