data_4GTP
#
_model_server_result.job_id            Dg9z-Fsc4uAvj5JQF0sG-g 
_model_server_result.datetime_utc      '2024-11-06 01:52:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4gtp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":506}' 
#
_entry.id    4GTP 
#
_exptl.entry_id    4GTP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4GTP 
_cell.length_a            171.65 
_cell.length_b            171.65 
_cell.length_c            70.005 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4GTP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B OD2 ASP 297 B ASP 297 1_555 D ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
metalc ? metalc2 B OD1 ASP 297 B ASP 297 1_555 D ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? 
metalc ? metalc3 B SG CYS 299 B CYS 299 1_555 D ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? 
metalc ? metalc4 B NE2 HIS 362 B HIS 362 1_555 D ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? 
metalc ? metalc5 D ZN ZN . B ZN 501 1_555 F NBA 7TP . B 7TP 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 164 n n 
S C1 DMS sing 165 n n 
S C2 DMS sing 166 n n 
C1 H11 DMS sing 167 n n 
C1 H12 DMS sing 168 n n 
C1 H13 DMS sing 169 n n 
C2 H21 DMS sing 170 n n 
C2 H22 DMS sing 171 n n 
C2 H23 DMS sing 172 n n 
#
_atom_sites.entry_id                     4GTP 
_atom_sites.fract_transf_matrix[1][1]    0.005826 
_atom_sites.fract_transf_matrix[1][2]    0.003364 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006727 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014285 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 DMS A 1 401 1 DMS DMS . 
D 4 ZN B 1 501 1 ZN ZN . 
E 5 FPP B 1 502 1 FPP C2 . 
F 6 7TP B 1 503 1 7TP DRG . 
G 3 DMS B 1 504 2 DMS DMS . 
H 3 DMS B 1 505 3 DMS DMS . 
I 3 DMS B 1 506 4 DMS DMS . 
J 7 HOH A 1 501 2 HOH HOH . 
J 7 HOH A 2 502 3 HOH HOH . 
J 7 HOH A 3 503 6 HOH HOH . 
J 7 HOH A 4 504 8 HOH HOH . 
J 7 HOH A 5 505 11 HOH HOH . 
J 7 HOH A 6 506 12 HOH HOH . 
J 7 HOH A 7 507 13 HOH HOH . 
J 7 HOH A 8 508 18 HOH HOH . 
J 7 HOH A 9 509 19 HOH HOH . 
J 7 HOH A 10 510 24 HOH HOH . 
J 7 HOH A 11 511 27 HOH HOH . 
J 7 HOH A 12 512 29 HOH HOH . 
J 7 HOH A 13 513 32 HOH HOH . 
J 7 HOH A 14 514 34 HOH HOH . 
J 7 HOH A 15 515 43 HOH HOH . 
J 7 HOH A 16 516 44 HOH HOH . 
J 7 HOH A 17 517 45 HOH HOH . 
J 7 HOH A 18 518 46 HOH HOH . 
J 7 HOH A 19 519 48 HOH HOH . 
J 7 HOH A 20 520 51 HOH HOH . 
J 7 HOH A 21 521 53 HOH HOH . 
J 7 HOH A 22 522 55 HOH HOH . 
J 7 HOH A 23 523 60 HOH HOH . 
J 7 HOH A 24 524 62 HOH HOH . 
J 7 HOH A 25 525 63 HOH HOH . 
J 7 HOH A 26 526 65 HOH HOH . 
J 7 HOH A 27 527 66 HOH HOH . 
J 7 HOH A 28 528 69 HOH HOH . 
J 7 HOH A 29 529 70 HOH HOH . 
J 7 HOH A 30 530 72 HOH HOH . 
J 7 HOH A 31 531 74 HOH HOH . 
J 7 HOH A 32 532 76 HOH HOH . 
J 7 HOH A 33 533 77 HOH HOH . 
J 7 HOH A 34 534 78 HOH HOH . 
J 7 HOH A 35 535 79 HOH HOH . 
J 7 HOH A 36 536 81 HOH HOH . 
J 7 HOH A 37 537 82 HOH HOH . 
J 7 HOH A 38 538 84 HOH HOH . 
J 7 HOH A 39 539 85 HOH HOH . 
J 7 HOH A 40 540 89 HOH HOH . 
J 7 HOH A 41 541 92 HOH HOH . 
J 7 HOH A 42 542 94 HOH HOH . 
J 7 HOH A 43 543 95 HOH HOH . 
J 7 HOH A 44 544 98 HOH HOH . 
J 7 HOH A 45 545 101 HOH HOH . 
J 7 HOH A 46 546 102 HOH HOH . 
J 7 HOH A 47 547 107 HOH HOH . 
J 7 HOH A 48 548 108 HOH HOH . 
J 7 HOH A 49 549 109 HOH HOH . 
J 7 HOH A 50 550 110 HOH HOH . 
J 7 HOH A 51 551 111 HOH HOH . 
J 7 HOH A 52 552 120 HOH HOH . 
J 7 HOH A 53 553 124 HOH HOH . 
J 7 HOH A 54 554 125 HOH HOH . 
J 7 HOH A 55 555 127 HOH HOH . 
J 7 HOH A 56 556 132 HOH HOH . 
J 7 HOH A 57 557 136 HOH HOH . 
K 7 HOH B 1 601 1 HOH HOH . 
K 7 HOH B 2 602 4 HOH HOH . 
K 7 HOH B 3 603 5 HOH HOH . 
K 7 HOH B 4 604 7 HOH HOH . 
K 7 HOH B 5 605 9 HOH HOH . 
K 7 HOH B 6 606 14 HOH HOH . 
K 7 HOH B 7 607 16 HOH HOH . 
K 7 HOH B 8 608 17 HOH HOH . 
K 7 HOH B 9 609 20 HOH HOH . 
K 7 HOH B 10 610 21 HOH HOH . 
K 7 HOH B 11 611 22 HOH HOH . 
K 7 HOH B 12 612 23 HOH HOH . 
K 7 HOH B 13 613 25 HOH HOH . 
K 7 HOH B 14 614 26 HOH HOH . 
K 7 HOH B 15 615 28 HOH HOH . 
K 7 HOH B 16 616 30 HOH HOH . 
K 7 HOH B 17 617 31 HOH HOH . 
K 7 HOH B 18 618 33 HOH HOH . 
K 7 HOH B 19 619 35 HOH HOH . 
K 7 HOH B 20 620 37 HOH HOH . 
K 7 HOH B 21 621 38 HOH HOH . 
K 7 HOH B 22 622 39 HOH HOH . 
K 7 HOH B 23 623 40 HOH HOH . 
K 7 HOH B 24 624 41 HOH HOH . 
K 7 HOH B 25 625 42 HOH HOH . 
K 7 HOH B 26 626 47 HOH HOH . 
K 7 HOH B 27 627 49 HOH HOH . 
K 7 HOH B 28 628 50 HOH HOH . 
K 7 HOH B 29 629 52 HOH HOH . 
K 7 HOH B 30 630 54 HOH HOH . 
K 7 HOH B 31 631 56 HOH HOH . 
K 7 HOH B 32 632 58 HOH HOH . 
K 7 HOH B 33 633 59 HOH HOH . 
K 7 HOH B 34 634 61 HOH HOH . 
K 7 HOH B 35 635 64 HOH HOH . 
K 7 HOH B 36 636 67 HOH HOH . 
K 7 HOH B 37 637 71 HOH HOH . 
K 7 HOH B 38 638 73 HOH HOH . 
K 7 HOH B 39 639 75 HOH HOH . 
K 7 HOH B 40 640 80 HOH HOH . 
K 7 HOH B 41 641 86 HOH HOH . 
K 7 HOH B 42 642 87 HOH HOH . 
K 7 HOH B 43 643 88 HOH HOH . 
K 7 HOH B 44 644 90 HOH HOH . 
K 7 HOH B 45 645 91 HOH HOH . 
K 7 HOH B 46 646 93 HOH HOH . 
K 7 HOH B 47 647 96 HOH HOH . 
K 7 HOH B 48 648 97 HOH HOH . 
K 7 HOH B 49 649 100 HOH HOH . 
K 7 HOH B 50 650 104 HOH HOH . 
K 7 HOH B 51 651 105 HOH HOH . 
K 7 HOH B 52 652 106 HOH HOH . 
K 7 HOH B 53 653 112 HOH HOH . 
K 7 HOH B 54 654 113 HOH HOH . 
K 7 HOH B 55 655 114 HOH HOH . 
K 7 HOH B 56 656 115 HOH HOH . 
K 7 HOH B 57 657 116 HOH HOH . 
K 7 HOH B 58 658 117 HOH HOH . 
K 7 HOH B 59 659 118 HOH HOH . 
K 7 HOH B 60 660 119 HOH HOH . 
K 7 HOH B 61 661 121 HOH HOH . 
K 7 HOH B 62 662 122 HOH HOH . 
K 7 HOH B 63 663 123 HOH HOH . 
K 7 HOH B 64 664 126 HOH HOH . 
K 7 HOH B 65 665 128 HOH HOH . 
K 7 HOH B 66 666 129 HOH HOH . 
K 7 HOH B 67 667 130 HOH HOH . 
K 7 HOH B 68 668 131 HOH HOH . 
K 7 HOH B 69 669 133 HOH HOH . 
K 7 HOH B 70 670 134 HOH HOH . 
K 7 HOH B 71 671 135 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . I 3 55.309 54.096 2.089 1 62.46 ? S DMS 506 B 1 
HETATM 2 O O DMS . . . I 3 55.489 55.446 3.245 1 66.09 ? O DMS 506 B 1 
HETATM 3 C C1 DMS . . . I 3 54.124 52.818 2.663 1 60.46 ? C1 DMS 506 B 1 
HETATM 4 C C2 DMS . . . I 3 54.369 54.744 0.647 1 63.26 ? C2 DMS 506 B 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#