data_4GTZ # _model_server_result.job_id vzB0jdUPh7HJFw3FaH3J_g _model_server_result.datetime_utc '2024-11-16 11:26:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gtz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1011}' # _entry.id 4GTZ # _exptl.entry_id 4GTZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4GTZ _cell.length_a 105.21 _cell.length_b 105.21 _cell.length_c 174.668 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GTZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,H,I,J 1 1 B,D,K,L,M,N,O,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 H N N ? 6 I N N ? 6 N N N ? 6 O N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 MAN BMA C1 O1 . O6 HO6 . sing 4 ? 2 5 4 MAN MAN C1 O1 . O3 HO3 . sing 5 ? 2 6 3 MAN BMA C1 O1 . O3 HO3 . sing 6 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 2000 NAG 2 n C NAG 2 C 2 NAG A 2001 NAG 2 n C BMA 3 C 3 BMA A 2002 MAN 2 n C MAN 4 C 4 MAN A 2004 MAN 2 n C MAN 5 C 5 MAN A 2005 MAN 2 n C MAN 6 C 6 MAN A 2003 MAN 3 n D NAG 1 D 1 NAG B 2000 NAG 3 n D NAG 2 D 2 NAG B 2001 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 95 A CYS 177 1_555 A SG CYS 141 A CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 103 A CYS 185 1_555 A SG CYS 315 A CYS 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 331 A CYS 413 1_555 A SG CYS 430 A CYS 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 380 A CYS 462 1_555 A SG CYS 766 A CYS 848 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 A SG CYS 514 A CYS 596 1_555 A SG CYS 570 A CYS 652 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 A SG CYS 525 A CYS 607 1_555 A SG CYS 624 A CYS 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 A SG CYS 527 A CYS 609 1_555 A SG CYS 609 A CYS 691 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf8 A SG CYS 736 A CYS 818 1_555 A SG CYS 746 A CYS 828 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 B SG CYS 95 B CYS 177 1_555 B SG CYS 141 B CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf10 B SG CYS 103 B CYS 185 1_555 B SG CYS 315 B CYS 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf11 B SG CYS 331 B CYS 413 1_555 B SG CYS 430 B CYS 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf12 B SG CYS 380 B CYS 462 1_555 B SG CYS 766 B CYS 848 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf13 B SG CYS 514 B CYS 596 1_555 B SG CYS 570 B CYS 652 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf14 B SG CYS 525 B CYS 607 1_555 B SG CYS 624 B CYS 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf15 B SG CYS 527 B CYS 609 1_555 B SG CYS 609 B CYS 691 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf16 B SG CYS 736 B CYS 818 1_555 B SG CYS 746 B CYS 828 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 185 A ASN 267 1_555 E C1 NAG . A NAG 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale2 A ND2 ASN 241 A ASN 323 1_555 F C1 NAG . A NAG 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale3 A ND2 ASN 485 A ASN 567 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale4 B ND2 ASN 185 B ASN 267 1_555 K C1 NAG . B NAG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale5 B ND2 ASN 241 B ASN 323 1_555 L C1 NAG . B NAG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale6 B ND2 ASN 485 B ASN 567 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale7 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale8 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale9 C O6 BMA . C BMA 3 1_555 C C1 MAN . C MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale10 C O3 BMA . C BMA 3 1_555 C C1 MAN . C MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale11 C O3 MAN . C MAN 4 1_555 C C1 MAN . C MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale12 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? metalc ? metalc1 A OD1 ASP 118 A ASP 200 1_555 H ZN ZN . A ZN 1010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc2 A OD2 ASP 118 A ASP 200 1_555 H ZN ZN . A ZN 1010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? metalc ? metalc3 A OG1 THR 156 A THR 238 1_555 H ZN ZN . A ZN 1010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.781 ? metalc ? metalc4 A OD2 ASP 276 A ASP 358 1_555 I ZN ZN . A ZN 1011 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc5 A OD1 ASP 276 A ASP 358 1_555 I ZN ZN . A ZN 1011 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc6 A NE2 HIS 280 A HIS 362 1_555 I ZN ZN . A ZN 1011 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc7 A OD2 ASP 323 A ASP 405 1_555 H ZN ZN . A ZN 1010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.911 ? metalc ? metalc8 A NE2 HIS 324 A HIS 406 1_555 H ZN ZN . A ZN 1010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc9 A NE2 HIS 435 A HIS 517 1_555 I ZN ZN . A ZN 1011 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.925 ? metalc ? metalc10 A OD1 ASP 698 A ASP 780 1_555 J CA CA . A CA 1012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc11 A OD1 ASP 700 A ASP 782 1_555 J CA CA . A CA 1012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc12 A OD2 ASP 700 A ASP 782 1_555 J CA CA . A CA 1012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.086 ? metalc ? metalc13 A OD1 ASP 702 A ASP 784 1_555 J CA CA . A CA 1012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc14 A O ARG 704 A ARG 786 1_555 J CA CA . A CA 1012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc15 A OD1 ASP 706 A ASP 788 1_555 J CA CA . A CA 1012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc16 G O2P C5P . A C5P 1009 1_555 H ZN ZN . A ZN 1010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc17 G O2P C5P . A C5P 1009 1_555 I ZN ZN . A ZN 1011 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc18 B OD1 ASP 118 B ASP 200 1_555 N ZN ZN . B ZN 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc19 B OD2 ASP 118 B ASP 200 1_555 N ZN ZN . B ZN 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.62 ? metalc ? metalc20 B OG1 THR 156 B THR 238 1_555 N ZN ZN . B ZN 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.884 ? metalc ? metalc21 B OD2 ASP 276 B ASP 358 1_555 O ZN ZN . B ZN 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc22 B OD1 ASP 276 B ASP 358 1_555 O ZN ZN . B ZN 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc23 B NE2 HIS 280 B HIS 362 1_555 O ZN ZN . B ZN 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc24 B OD2 ASP 323 B ASP 405 1_555 N ZN ZN . B ZN 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc25 B NE2 HIS 324 B HIS 406 1_555 N ZN ZN . B ZN 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc26 B NE2 HIS 435 B HIS 517 1_555 O ZN ZN . B ZN 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc27 B OD1 ASP 698 B ASP 780 1_555 P CA CA . B CA 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc28 B OD1 ASP 700 B ASP 782 1_555 P CA CA . B CA 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc29 B OD2 ASP 700 B ASP 782 1_555 P CA CA . B CA 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3 ? metalc ? metalc30 B OD1 ASP 702 B ASP 784 1_555 P CA CA . B CA 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc31 B OD2 ASP 702 B ASP 784 1_555 P CA CA . B CA 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.042 ? metalc ? metalc32 B O ARG 704 B ARG 786 1_555 P CA CA . B CA 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc33 B OD1 ASP 706 B ASP 788 1_555 P CA CA . B CA 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc34 M O2P C5P . B C5P 1005 1_555 N ZN ZN . B ZN 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc35 M O2P C5P . B C5P 1005 1_555 O ZN ZN . B ZN 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc36 M O3P C5P . B C5P 1005 1_555 O ZN ZN . B ZN 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4GTZ _atom_sites.fract_transf_matrix[1][1] 0.009505 _atom_sites.fract_transf_matrix[1][2] 0.005488 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010975 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005725 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 NAG A 1 1007 3000 NAG NAG . F 4 NAG A 1 1008 4000 NAG NAG . G 5 C5P A 1 1009 5000 C5P C5P . H 6 ZN A 1 1010 5001 ZN ZN . I 6 ZN A 1 1011 5002 ZN ZN . J 7 CA A 1 1012 5003 CA CA . K 4 NAG B 1 1003 3000 NAG NAG . L 4 NAG B 1 1004 4000 NAG NAG . M 5 C5P B 1 1005 5000 C5P C5P . N 6 ZN B 1 1006 5001 ZN ZN . O 6 ZN B 1 1007 5002 ZN ZN . P 7 CA B 1 1008 5003 CA CA . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 6 _atom_site.Cartn_x 29.699 _atom_site.Cartn_y 20.261 _atom_site.Cartn_z 39.358 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 80.93 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 1011 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #