data_4GUP # _model_server_result.job_id cJznWGKT8rzT6ZB5n7TLbQ _model_server_result.datetime_utc '2024-11-23 22:51:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gup # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":301}' # _entry.id 4GUP # _exptl.entry_id 4GUP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 191.147 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-amino-4-oxo-3,4-dihydropteridine-6-carbaldehyde _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4GUP _cell.length_a 59.154 _cell.length_b 89.777 _cell.length_c 171.338 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GUP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G 1 1 C,D,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 99 A CYS 98 1_555 A SG CYS 162 A CYS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.864 ? disulf ? disulf2 A SG CYS 201 A CYS 200 1_555 A SG CYS 257 A CYS 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.841 ? disulf ? disulf3 B SG CYS 25 B CYS 25 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf4 C SG CYS 99 C CYS 98 1_555 C SG CYS 162 C CYS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.743 ? disulf ? disulf5 C SG CYS 201 C CYS 200 1_555 C SG CYS 257 C CYS 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.846 ? disulf ? disulf6 D SG CYS 25 D CYS 25 1_555 D SG CYS 80 D CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A NZ LYS 44 A LYS 43 1_555 E C9 6FP . A 6FP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.357 ? covale ? covale2 C NZ LYS 44 C LYS 43 1_555 H C9 6FP . C 6FP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? # _chem_comp.formula 'C7 H5 N5 O2' _chem_comp.formula_weight 191.147 _chem_comp.id 6FP _chem_comp.mon_nstd_flag . _chem_comp.name 2-amino-4-oxo-3,4-dihydropteridine-6-carbaldehyde _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 6-formylpterin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2 C2 6FP sing 1 n n C2 N1 6FP doub 2 n n C2 N3 6FP sing 3 n n N1 C8A 6FP sing 4 n n N3 C4 6FP sing 5 n n C8A N8 6FP doub 6 n y C8A C4A 6FP sing 7 n y N8 C7 6FP sing 8 n y C4 C4A 6FP sing 9 n n C4 O4 6FP doub 10 n n C4A N5 6FP doub 11 n y C7 C6 6FP doub 12 n y N5 C6 6FP sing 13 n y C6 C9 6FP sing 14 n n C9 O9 6FP doub 15 n n C9 H2 6FP sing 16 n n N3 H4 6FP sing 17 n n N2 H5 6FP sing 18 n n N2 H6 6FP sing 19 n n C7 H7 6FP sing 20 n n # _atom_sites.entry_id 4GUP _atom_sites.fract_transf_matrix[1][1] 0.016905 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011139 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005836 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 6FP A 1 301 1 6FP DRG . F 4 CL A 1 302 1 CL CL . G 5 PO4 A 1 303 2 PO4 PO4 . H 3 6FP C 1 301 1 6FP DRG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C9 6FP . . . H 3 37.108 50.177 -18.95 1 54.85 ? C9 6FP 301 C 1 HETATM 2 C C6 6FP . . . H 3 37.733 50.721 -20.066 1 52.19 ? C6 6FP 301 C 1 HETATM 3 N N5 6FP . . . H 3 37.062 51.577 -20.844 1 51.62 ? N5 6FP 301 C 1 HETATM 4 C C4A 6FP . . . H 3 37.645 52.115 -21.925 1 52.32 ? C4A 6FP 301 C 1 HETATM 5 C C4 6FP . . . H 3 36.928 53.005 -22.722 1 53.92 ? C4 6FP 301 C 1 HETATM 6 O O4 6FP . . . H 3 35.761 53.314 -22.458 1 54.02 ? O4 6FP 301 C 1 HETATM 7 N N3 6FP . . . H 3 37.578 53.547 -23.849 1 54.28 ? N3 6FP 301 C 1 HETATM 8 C C2 6FP . . . H 3 38.917 53.173 -24.129 1 55.51 ? C2 6FP 301 C 1 HETATM 9 N N2 6FP . . . H 3 39.545 53.673 -25.185 1 56.96 ? N2 6FP 301 C 1 HETATM 10 N N1 6FP . . . H 3 39.569 52.31 -23.33 1 53.79 ? N1 6FP 301 C 1 HETATM 11 C C8A 6FP . . . H 3 38.967 51.786 -22.256 1 51.08 ? C8A 6FP 301 C 1 HETATM 12 N N8 6FP . . . H 3 39.654 50.936 -21.495 1 48.76 ? N8 6FP 301 C 1 HETATM 13 C C7 6FP . . . H 3 39.046 50.379 -20.373 1 50.24 ? C7 6FP 301 C 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 13 #