data_4GV5 # _model_server_result.job_id Rcqpvrjmx78smfRADekAQw _model_server_result.datetime_utc '2025-03-06 09:16:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gv5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":101}' # _entry.id 4GV5 # _exptl.entry_id 4GV5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4GV5 _cell.length_a 66.922 _cell.length_b 74.33 _cell.length_c 80.199 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GV5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 PISA trimeric 3 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 2 1,2 B,H,I,J,P 3 3 A,C,D,E,F,G,K,L,M,N,O,Q 3 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_565 x,-y+1,-z+1/2 1 0 0 0 -1 0 0 0 -1 0 74.33 40.0995 3 'crystal symmetry operation' 6_655 -x+1,-y+1/2,z -1 0 0 0 -1 0 0 0 1 66.922 37.165 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 I N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 4 1_555 A SG CYS 36 A CYS 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? disulf ? disulf2 A SG CYS 11 A CYS 11 1_555 A SG CYS 30 A CYS 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? disulf ? disulf3 A SG CYS 18 A CYS 18 1_555 A SG CYS 37 A CYS 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf4 B SG CYS 4 B CYS 4 1_555 B SG CYS 36 B CYS 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf5 B SG CYS 11 B CYS 11 1_555 B SG CYS 30 B CYS 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf6 B SG CYS 18 B CYS 18 1_555 B SG CYS 37 B CYS 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? disulf ? disulf7 C SG CYS 4 C CYS 4 1_555 C SG CYS 36 C CYS 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? disulf ? disulf8 C SG CYS 11 C CYS 11 1_555 C SG CYS 30 C CYS 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? disulf ? disulf9 C SG CYS 18 C CYS 18 1_555 C SG CYS 37 C CYS 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.7 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 277 n n S O2 SO4 doub 278 n n S O3 SO4 sing 279 n n S O4 SO4 sing 280 n n # _atom_sites.entry_id 4GV5 _atom_sites.fract_transf_matrix[1][1] 0.014943 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013454 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012469 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 SCN A 1 101 5 SCN SCN . E 2 SCN A 1 102 6 SCN SCN . F 3 GOL A 1 103 10 GOL GOL . G 3 GOL A 1 104 11 GOL GOL . H 4 SO4 B 1 101 1 SO4 SO4 . I 4 SO4 B 1 102 3 SO4 SO4 . J 2 SCN B 1 103 4 SCN SCN . K 4 SO4 C 1 101 2 SO4 SO4 . L 2 SCN C 1 102 7 SCN SCN . M 3 GOL C 1 103 8 GOL GOL . N 3 GOL C 1 104 9 GOL GOL . O 5 HOH A 1 201 3 HOH HOH . O 5 HOH A 2 202 7 HOH HOH . O 5 HOH A 3 203 13 HOH HOH . O 5 HOH A 4 204 14 HOH HOH . O 5 HOH A 5 205 16 HOH HOH . O 5 HOH A 6 206 17 HOH HOH . O 5 HOH A 7 207 19 HOH HOH . O 5 HOH A 8 208 23 HOH HOH . O 5 HOH A 9 209 25 HOH HOH . O 5 HOH A 10 210 26 HOH HOH . O 5 HOH A 11 211 28 HOH HOH . O 5 HOH A 12 212 30 HOH HOH . O 5 HOH A 13 213 31 HOH HOH . O 5 HOH A 14 214 38 HOH HOH . O 5 HOH A 15 215 42 HOH HOH . O 5 HOH A 16 216 50 HOH HOH . O 5 HOH A 17 217 51 HOH HOH . O 5 HOH A 18 218 62 HOH HOH . O 5 HOH A 19 219 63 HOH HOH . O 5 HOH A 20 220 64 HOH HOH . O 5 HOH A 21 221 65 HOH HOH . P 5 HOH B 1 201 1 HOH HOH . P 5 HOH B 2 202 6 HOH HOH . P 5 HOH B 3 203 8 HOH HOH . P 5 HOH B 4 204 9 HOH HOH . P 5 HOH B 5 205 10 HOH HOH . P 5 HOH B 6 206 11 HOH HOH . P 5 HOH B 7 207 18 HOH HOH . P 5 HOH B 8 208 20 HOH HOH . P 5 HOH B 9 209 22 HOH HOH . P 5 HOH B 10 210 24 HOH HOH . P 5 HOH B 11 211 29 HOH HOH . P 5 HOH B 12 212 32 HOH HOH . P 5 HOH B 13 213 33 HOH HOH . P 5 HOH B 14 214 34 HOH HOH . P 5 HOH B 15 215 35 HOH HOH . P 5 HOH B 16 216 36 HOH HOH . P 5 HOH B 17 217 40 HOH HOH . P 5 HOH B 18 218 44 HOH HOH . P 5 HOH B 19 219 46 HOH HOH . P 5 HOH B 20 220 49 HOH HOH . P 5 HOH B 21 221 52 HOH HOH . P 5 HOH B 22 222 53 HOH HOH . P 5 HOH B 23 223 54 HOH HOH . P 5 HOH B 24 224 57 HOH HOH . P 5 HOH B 25 225 58 HOH HOH . P 5 HOH B 26 226 59 HOH HOH . P 5 HOH B 27 227 60 HOH HOH . Q 5 HOH C 1 201 4 HOH HOH . Q 5 HOH C 2 202 5 HOH HOH . Q 5 HOH C 3 203 12 HOH HOH . Q 5 HOH C 4 204 15 HOH HOH . Q 5 HOH C 5 205 21 HOH HOH . Q 5 HOH C 6 206 27 HOH HOH . Q 5 HOH C 7 207 41 HOH HOH . Q 5 HOH C 8 208 43 HOH HOH . Q 5 HOH C 9 209 45 HOH HOH . Q 5 HOH C 10 210 47 HOH HOH . Q 5 HOH C 11 211 48 HOH HOH . Q 5 HOH C 12 212 55 HOH HOH . Q 5 HOH C 13 213 56 HOH HOH . Q 5 HOH C 14 214 61 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . H 4 24.77 11.503 46.38 0.5 35.91 ? S SO4 101 B 1 HETATM 2 O O1 SO4 . . . H 4 25.315 12.077 45.027 1 60.98 ? O1 SO4 101 B 1 HETATM 3 O O2 SO4 . . . H 4 23.432 12.022 46.731 1 50.86 ? O2 SO4 101 B 1 HETATM 4 O O3 SO4 . . . H 4 24.739 9.983 46.389 1 52.1 ? O3 SO4 101 B 1 HETATM 5 O O4 SO4 . . . H 4 25.863 11.792 47.444 1 56.55 ? O4 SO4 101 B 1 # _model_server_stats.io_time_ms 36 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #