data_4GV6 # _model_server_result.job_id 3jzORINRg_it4skfqekmLA _model_server_result.datetime_utc '2024-12-21 12:49:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gv6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":101}' # _entry.id 4GV6 # _exptl.entry_id 4GV6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4GV6 _cell.length_a 46.51 _cell.length_b 46.51 _cell.length_c 208.65 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GV6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' GTP 1 B GTP 8 1_555 A P G 2 B G 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.584 ? metalc ? metalc1 A OP1 C 4 B C 11 1_555 D MN MN . B MN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc2 D MN MN . B MN 101 1_555 C OD1 ASP 34 A ASP 389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc3 D MN MN . B MN 101 1_555 H O HOH . A HOH 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc4 D MN MN . B MN 101 1_555 H O HOH . A HOH 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc5 D MN MN . B MN 101 1_555 H O HOH . A HOH 739 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc6 C OE2 GLU 44 A GLU 399 1_555 E ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc7 C SG CYS 151 A CYS 506 1_555 E ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc8 C NE2 HIS 154 A HIS 509 1_555 E ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc9 C SG CYS 174 A CYS 529 1_555 E ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? hydrog WATSON-CRICK hydrog1 A N1 GTP 1 B GTP 8 1_555 B N3 C 5 C C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 GTP 1 B GTP 8 1_555 B O2 C 5 C C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 GTP 1 B GTP 8 1_555 B N4 C 5 C C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 G 2 B G 9 1_555 B N3 C 4 C C 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N2 G 2 B G 9 1_555 B O2 C 4 C C 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O6 G 2 B G 9 1_555 B N4 C 4 C C 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N1 G 3 B G 10 1_555 B N3 C 3 C C 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N2 G 3 B G 10 1_555 B O2 C 3 C C 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O6 G 3 B G 10 1_555 B N4 C 3 C C 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N3 C 4 B C 11 1_555 B N1 G 2 C G 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N4 C 4 B C 11 1_555 B O6 G 2 C G 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O2 C 4 B C 11 1_555 B N2 G 2 C G 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4GV6 _atom_sites.fract_transf_matrix[1][1] 0.021501 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021501 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004793 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MN B 1 101 1 MN MN . E 5 ZN A 1 601 1 ZN ZN . F 6 HOH B 1 201 29 HOH HOH . F 6 HOH B 2 202 38 HOH HOH . F 6 HOH B 3 203 41 HOH HOH . F 6 HOH B 4 204 46 HOH HOH . F 6 HOH B 5 205 49 HOH HOH . F 6 HOH B 6 206 103 HOH HOH . F 6 HOH B 7 207 110 HOH HOH . F 6 HOH B 8 208 27 HOH HOH . F 6 HOH B 9 209 29 HOH HOH . F 6 HOH B 10 210 31 HOH HOH . F 6 HOH B 11 211 51 HOH HOH . G 6 HOH C 1 101 64 HOH HOH . H 6 HOH A 1 701 1 HOH HOH . H 6 HOH A 2 702 2 HOH HOH . H 6 HOH A 3 703 3 HOH HOH . H 6 HOH A 4 704 4 HOH HOH . H 6 HOH A 5 705 5 HOH HOH . H 6 HOH A 6 706 8 HOH HOH . H 6 HOH A 7 707 9 HOH HOH . H 6 HOH A 8 708 10 HOH HOH . H 6 HOH A 9 709 11 HOH HOH . H 6 HOH A 10 710 12 HOH HOH . H 6 HOH A 11 711 13 HOH HOH . H 6 HOH A 12 712 14 HOH HOH . H 6 HOH A 13 713 15 HOH HOH . H 6 HOH A 14 714 16 HOH HOH . H 6 HOH A 15 715 17 HOH HOH . H 6 HOH A 16 716 18 HOH HOH . H 6 HOH A 17 717 20 HOH HOH . H 6 HOH A 18 718 21 HOH HOH . H 6 HOH A 19 719 22 HOH HOH . H 6 HOH A 20 720 23 HOH HOH . H 6 HOH A 21 721 24 HOH HOH . H 6 HOH A 22 722 25 HOH HOH . H 6 HOH A 23 723 26 HOH HOH . H 6 HOH A 24 724 27 HOH HOH . H 6 HOH A 25 725 28 HOH HOH . H 6 HOH A 26 726 30 HOH HOH . H 6 HOH A 27 727 31 HOH HOH . H 6 HOH A 28 728 32 HOH HOH . H 6 HOH A 29 729 33 HOH HOH . H 6 HOH A 30 730 34 HOH HOH . H 6 HOH A 31 731 35 HOH HOH . H 6 HOH A 32 732 36 HOH HOH . H 6 HOH A 33 733 37 HOH HOH . H 6 HOH A 34 734 39 HOH HOH . H 6 HOH A 35 735 40 HOH HOH . H 6 HOH A 36 736 43 HOH HOH . H 6 HOH A 37 737 45 HOH HOH . H 6 HOH A 38 738 47 HOH HOH . H 6 HOH A 39 739 48 HOH HOH . H 6 HOH A 40 740 50 HOH HOH . H 6 HOH A 41 741 51 HOH HOH . H 6 HOH A 42 742 52 HOH HOH . H 6 HOH A 43 743 54 HOH HOH . H 6 HOH A 44 744 55 HOH HOH . H 6 HOH A 45 745 56 HOH HOH . H 6 HOH A 46 746 57 HOH HOH . H 6 HOH A 47 747 58 HOH HOH . H 6 HOH A 48 748 61 HOH HOH . H 6 HOH A 49 749 62 HOH HOH . H 6 HOH A 50 750 63 HOH HOH . H 6 HOH A 51 751 65 HOH HOH . H 6 HOH A 52 752 66 HOH HOH . H 6 HOH A 53 753 68 HOH HOH . H 6 HOH A 54 754 70 HOH HOH . H 6 HOH A 55 755 72 HOH HOH . H 6 HOH A 56 756 74 HOH HOH . H 6 HOH A 57 757 75 HOH HOH . H 6 HOH A 58 758 77 HOH HOH . H 6 HOH A 59 759 78 HOH HOH . H 6 HOH A 60 760 79 HOH HOH . H 6 HOH A 61 761 80 HOH HOH . H 6 HOH A 62 762 82 HOH HOH . H 6 HOH A 63 763 83 HOH HOH . H 6 HOH A 64 764 84 HOH HOH . H 6 HOH A 65 765 85 HOH HOH . H 6 HOH A 66 766 86 HOH HOH . H 6 HOH A 67 767 87 HOH HOH . H 6 HOH A 68 768 88 HOH HOH . H 6 HOH A 69 769 89 HOH HOH . H 6 HOH A 70 770 92 HOH HOH . H 6 HOH A 71 771 93 HOH HOH . H 6 HOH A 72 772 95 HOH HOH . H 6 HOH A 73 773 96 HOH HOH . H 6 HOH A 74 774 98 HOH HOH . H 6 HOH A 75 775 99 HOH HOH . H 6 HOH A 76 776 101 HOH HOH . H 6 HOH A 77 777 105 HOH HOH . H 6 HOH A 78 778 107 HOH HOH . H 6 HOH A 79 779 109 HOH HOH . H 6 HOH A 80 780 111 HOH HOH . H 6 HOH A 81 781 112 HOH HOH . H 6 HOH A 82 782 114 HOH HOH . H 6 HOH A 83 783 115 HOH HOH . H 6 HOH A 84 784 116 HOH HOH . H 6 HOH A 85 785 117 HOH HOH . H 6 HOH A 86 786 120 HOH HOH . H 6 HOH A 87 787 122 HOH HOH . H 6 HOH A 88 788 124 HOH HOH . H 6 HOH A 89 789 134 HOH HOH . H 6 HOH A 90 790 135 HOH HOH . H 6 HOH A 91 791 144 HOH HOH . H 6 HOH A 92 792 145 HOH HOH . H 6 HOH A 93 793 149 HOH HOH . H 6 HOH A 94 794 151 HOH HOH . H 6 HOH A 95 795 1 HOH HOH . H 6 HOH A 96 796 3 HOH HOH . H 6 HOH A 97 797 4 HOH HOH . H 6 HOH A 98 798 6 HOH HOH . H 6 HOH A 99 799 7 HOH HOH . H 6 HOH A 100 800 8 HOH HOH . H 6 HOH A 101 801 9 HOH HOH . H 6 HOH A 102 802 10 HOH HOH . H 6 HOH A 103 803 11 HOH HOH . H 6 HOH A 104 804 14 HOH HOH . H 6 HOH A 105 805 15 HOH HOH . H 6 HOH A 106 806 16 HOH HOH . H 6 HOH A 107 807 18 HOH HOH . H 6 HOH A 108 808 19 HOH HOH . H 6 HOH A 109 809 28 HOH HOH . H 6 HOH A 110 810 32 HOH HOH . H 6 HOH A 111 811 37 HOH HOH . H 6 HOH A 112 812 44 HOH HOH . H 6 HOH A 113 813 53 HOH HOH . H 6 HOH A 114 814 58 HOH HOH . H 6 HOH A 115 815 62 HOH HOH . H 6 HOH A 116 816 75 HOH HOH . H 6 HOH A 117 817 82 HOH HOH . H 6 HOH A 118 818 86 HOH HOH . H 6 HOH A 119 819 100 HOH HOH . H 6 HOH A 120 820 111 HOH HOH . H 6 HOH A 121 821 114 HOH HOH . H 6 HOH A 122 822 121 HOH HOH . H 6 HOH A 123 823 4 HOH HOH . H 6 HOH A 124 824 6 HOH HOH . H 6 HOH A 125 825 8 HOH HOH . H 6 HOH A 126 826 14 HOH HOH . H 6 HOH A 127 827 22 HOH HOH . H 6 HOH A 128 828 23 HOH HOH . H 6 HOH A 129 829 34 HOH HOH . H 6 HOH A 130 830 43 HOH HOH . H 6 HOH A 131 831 78 HOH HOH . H 6 HOH A 132 832 47 HOH HOH . H 6 HOH A 133 833 4 HOH HOH . H 6 HOH A 134 834 5 HOH HOH . H 6 HOH A 135 835 10 HOH HOH . H 6 HOH A 136 836 59 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x -3.37 _atom_site.Cartn_y 7.448 _atom_site.Cartn_z 9.6 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 18.2 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 101 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #