data_4GVC
#
_model_server_result.job_id            zmyXQc7KXe76J3ov1WYk5Q 
_model_server_result.datetime_utc      '2025-02-05 08:58:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4gvc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":103}' 
#
_entry.id    4GVC 
#
_exptl.entry_id    4GVC 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4GVC 
_cell.length_a            26.717 
_cell.length_b            50.135 
_cell.length_c            57.712 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4GVC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B N THR 1 B THR 1 1_555 D S ANS . B ANS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? 
covale ? covale2 B C PHE 6 B PHE 6 1_555 B N PTR 7 B PTR 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale3 B C PTR 7 B PTR 7 1_555 B N ALA 8 B ALA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4GVC 
_atom_sites.fract_transf_matrix[1][1]    0.037429 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019946 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017327 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 CL A 1 1001 1 CL CL . 
D 4 ANS B 1 101 100 ANS ANS . 
E 3 CL B 1 102 1 CL CL . 
F 5 NA B 1 103 1 NA NA . 
G 6 HOH A 1 1101 1 HOH HOH . 
G 6 HOH A 2 1102 2 HOH HOH . 
G 6 HOH A 3 1103 3 HOH HOH . 
G 6 HOH A 4 1104 4 HOH HOH . 
G 6 HOH A 5 1105 5 HOH HOH . 
G 6 HOH A 6 1106 7 HOH HOH . 
G 6 HOH A 7 1107 9 HOH HOH . 
G 6 HOH A 8 1108 10 HOH HOH . 
G 6 HOH A 9 1109 11 HOH HOH . 
G 6 HOH A 10 1110 12 HOH HOH . 
G 6 HOH A 11 1111 13 HOH HOH . 
G 6 HOH A 12 1112 14 HOH HOH . 
G 6 HOH A 13 1113 15 HOH HOH . 
G 6 HOH A 14 1114 16 HOH HOH . 
G 6 HOH A 15 1115 17 HOH HOH . 
G 6 HOH A 16 1116 18 HOH HOH . 
G 6 HOH A 17 1117 19 HOH HOH . 
G 6 HOH A 18 1118 20 HOH HOH . 
G 6 HOH A 19 1119 21 HOH HOH . 
G 6 HOH A 20 1120 22 HOH HOH . 
G 6 HOH A 21 1121 23 HOH HOH . 
G 6 HOH A 22 1122 24 HOH HOH . 
G 6 HOH A 23 1123 25 HOH HOH . 
G 6 HOH A 24 1124 26 HOH HOH . 
G 6 HOH A 25 1125 27 HOH HOH . 
G 6 HOH A 26 1126 28 HOH HOH . 
G 6 HOH A 27 1127 29 HOH HOH . 
G 6 HOH A 28 1128 30 HOH HOH . 
G 6 HOH A 29 1129 31 HOH HOH . 
G 6 HOH A 30 1130 32 HOH HOH . 
G 6 HOH A 31 1131 33 HOH HOH . 
G 6 HOH A 32 1132 34 HOH HOH . 
G 6 HOH A 33 1133 35 HOH HOH . 
G 6 HOH A 34 1134 36 HOH HOH . 
G 6 HOH A 35 1135 37 HOH HOH . 
G 6 HOH A 36 1136 40 HOH HOH . 
G 6 HOH A 37 1137 41 HOH HOH . 
G 6 HOH A 38 1138 42 HOH HOH . 
G 6 HOH A 39 1139 43 HOH HOH . 
G 6 HOH A 40 1140 44 HOH HOH . 
G 6 HOH A 41 1141 45 HOH HOH . 
G 6 HOH A 42 1142 46 HOH HOH . 
G 6 HOH A 43 1143 47 HOH HOH . 
G 6 HOH A 44 1144 48 HOH HOH . 
G 6 HOH A 45 1145 49 HOH HOH . 
G 6 HOH A 46 1146 50 HOH HOH . 
G 6 HOH A 47 1147 51 HOH HOH . 
G 6 HOH A 48 1148 53 HOH HOH . 
G 6 HOH A 49 1149 54 HOH HOH . 
G 6 HOH A 50 1150 55 HOH HOH . 
G 6 HOH A 51 1151 57 HOH HOH . 
G 6 HOH A 52 1152 59 HOH HOH . 
G 6 HOH A 53 1153 60 HOH HOH . 
G 6 HOH A 54 1154 61 HOH HOH . 
G 6 HOH A 55 1155 62 HOH HOH . 
G 6 HOH A 56 1156 63 HOH HOH . 
G 6 HOH A 57 1157 64 HOH HOH . 
G 6 HOH A 58 1158 65 HOH HOH . 
G 6 HOH A 59 1159 67 HOH HOH . 
G 6 HOH A 60 1160 68 HOH HOH . 
G 6 HOH A 61 1161 70 HOH HOH . 
G 6 HOH A 62 1162 72 HOH HOH . 
G 6 HOH A 63 1163 73 HOH HOH . 
G 6 HOH A 64 1164 74 HOH HOH . 
G 6 HOH A 65 1165 75 HOH HOH . 
G 6 HOH A 66 1166 76 HOH HOH . 
G 6 HOH A 67 1167 77 HOH HOH . 
G 6 HOH A 68 1168 79 HOH HOH . 
G 6 HOH A 69 1169 80 HOH HOH . 
G 6 HOH A 70 1170 82 HOH HOH . 
G 6 HOH A 71 1171 83 HOH HOH . 
G 6 HOH A 72 1172 84 HOH HOH . 
G 6 HOH A 73 1173 88 HOH HOH . 
G 6 HOH A 74 1174 93 HOH HOH . 
G 6 HOH A 75 1175 97 HOH HOH . 
G 6 HOH A 76 1176 98 HOH HOH . 
G 6 HOH A 77 1177 105 HOH HOH . 
G 6 HOH A 78 1178 106 HOH HOH . 
G 6 HOH A 79 1179 113 HOH HOH . 
G 6 HOH A 80 1180 114 HOH HOH . 
G 6 HOH A 81 1181 115 HOH HOH . 
G 6 HOH A 82 1182 116 HOH HOH . 
G 6 HOH A 83 1183 117 HOH HOH . 
G 6 HOH A 84 1184 118 HOH HOH . 
G 6 HOH A 85 1185 119 HOH HOH . 
G 6 HOH A 86 1186 120 HOH HOH . 
G 6 HOH A 87 1187 122 HOH HOH . 
G 6 HOH A 88 1188 123 HOH HOH . 
G 6 HOH A 89 1189 124 HOH HOH . 
H 6 HOH B 1 201 8 HOH HOH . 
H 6 HOH B 2 202 39 HOH HOH . 
H 6 HOH B 3 203 52 HOH HOH . 
H 6 HOH B 4 204 56 HOH HOH . 
H 6 HOH B 5 205 85 HOH HOH . 
H 6 HOH B 6 206 102 HOH HOH . 
H 6 HOH B 7 207 103 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         F 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               12.295 
_atom_site.Cartn_y               2.882 
_atom_site.Cartn_z               10.368 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        18.65 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           103 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#