data_4GVT # _model_server_result.job_id bl-E9GXAWxpjPtS-uqO_CQ _model_server_result.datetime_utc '2024-12-01 18:31:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gvt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4GVT # _exptl.entry_id 4GVT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 804.061 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{(2S,3R,4E)-1-[(3,6-di-O-sulfo-beta-D-galactopyranosyl)oxy]-3-hydroxyoctadec-4-en-2-yl}dodecanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4GVT _cell.length_a 111.019 _cell.length_b 111.019 _cell.length_c 75.206 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GVT _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C36 H69 N O14 S2' _chem_comp.formula_weight 804.061 _chem_comp.id 0SG _chem_comp.mon_nstd_flag . _chem_comp.name N-{(2S,3R,4E)-1-[(3,6-di-O-sulfo-beta-D-galactopyranosyl)oxy]-3-hydroxyoctadec-4-en-2-yl}dodecanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C17 C16 0SG sing 1 n n C14 C15 0SG sing 2 n n C14 C13 0SG sing 3 n n C16 C15 0SG sing 4 n n O9 S 0SG doub 5 n n C13 C12 0SG sing 6 n n C12 C11 0SG sing 7 n n C11 C10 0SG sing 8 n n C10 C9 0SG sing 9 n n O4 S 0SG sing 10 n n O4 C45 0SG sing 11 n n S O8 0SG doub 12 n n S O10 0SG sing 13 n n O5 C46 0SG sing 14 n n C8 C9 0SG sing 15 n n C8 C7 0SG sing 16 n n O3 C44 0SG sing 17 n n C7 C6 0SG sing 18 n n C5 C6 0SG sing 19 n n C5 C4 0SG sing 20 n n C44 C45 0SG sing 21 n n C44 C43 0SG sing 22 n n C45 C46 0SG sing 23 n n C4 C3 0SG doub 24 e n C46 C47 0SG sing 25 n n O1 C2 0SG sing 26 n n C2 C3 0SG sing 27 n n C2 C1 0SG sing 28 n n O C43 0SG sing 29 n n O C 0SG sing 30 n n C43 O6 0SG sing 31 n n O6 C47 0SG sing 32 n n C47 C48 0SG sing 33 n n C48 O11 0SG sing 34 n n N C1 0SG sing 35 n n N C18 0SG sing 36 n n C1 C 0SG sing 37 n n C19 C18 0SG sing 38 n n C19 C20 0SG sing 39 n n O13 S1 0SG doub 40 n n C18 O2 0SG doub 41 n n O11 S1 0SG sing 42 n n S1 O12 0SG doub 43 n n S1 O14 0SG sing 44 n n C21 C20 0SG sing 45 n n C21 C22 0SG sing 46 n n C23 C22 0SG sing 47 n n C23 C24 0SG sing 48 n n C25 C24 0SG sing 49 n n C25 C26 0SG sing 50 n n C26 C27 0SG sing 51 n n C27 C28 0SG sing 52 n n C28 C29 0SG sing 53 n n C17 H1 0SG sing 54 n n C17 H2 0SG sing 55 n n C17 H3 0SG sing 56 n n C16 H4 0SG sing 57 n n C16 H5 0SG sing 58 n n C15 H6 0SG sing 59 n n C15 H7 0SG sing 60 n n C14 H8 0SG sing 61 n n C14 H9 0SG sing 62 n n C13 H10 0SG sing 63 n n C13 H11 0SG sing 64 n n C12 H12 0SG sing 65 n n C12 H13 0SG sing 66 n n C11 H14 0SG sing 67 n n C11 H15 0SG sing 68 n n C10 H16 0SG sing 69 n n C10 H17 0SG sing 70 n n C9 H18 0SG sing 71 n n C9 H19 0SG sing 72 n n C8 H20 0SG sing 73 n n C8 H21 0SG sing 74 n n C7 H22 0SG sing 75 n n C7 H23 0SG sing 76 n n C6 H24 0SG sing 77 n n C6 H25 0SG sing 78 n n C5 H26 0SG sing 79 n n C5 H27 0SG sing 80 n n C4 H28 0SG sing 81 n n C3 H30 0SG sing 82 n n C2 H32 0SG sing 83 n n O1 H33 0SG sing 84 n n C1 H34 0SG sing 85 n n C H35 0SG sing 86 n n C H36 0SG sing 87 n n C43 H37 0SG sing 88 n n C44 H38 0SG sing 89 n n O3 H39 0SG sing 90 n n C45 H40 0SG sing 91 n n C46 H41 0SG sing 92 n n O5 H42 0SG sing 93 n n C47 H43 0SG sing 94 n n C48 H44 0SG sing 95 n n C48 H45 0SG sing 96 n n N H46 0SG sing 97 n n C19 H47 0SG sing 98 n n C19 H48 0SG sing 99 n n C20 H49 0SG sing 100 n n C20 H50 0SG sing 101 n n C21 H51 0SG sing 102 n n C21 H52 0SG sing 103 n n C22 H53 0SG sing 104 n n C22 H54 0SG sing 105 n n C23 H55 0SG sing 106 n n C23 H56 0SG sing 107 n n C24 H57 0SG sing 108 n n C24 H58 0SG sing 109 n n C25 H59 0SG sing 110 n n C25 H60 0SG sing 111 n n C26 H61 0SG sing 112 n n C26 H62 0SG sing 113 n n C27 H63 0SG sing 114 n n C27 H64 0SG sing 115 n n C28 H65 0SG sing 116 n n C28 H66 0SG sing 117 n n C29 H67 0SG sing 118 n n C29 H68 0SG sing 119 n n C29 H69 0SG sing 120 n n O10 H29 0SG sing 121 n n O14 H31 0SG sing 122 n n # _atom_sites.entry_id 4GVT _atom_sites.fract_transf_matrix[1][1] 0.009007 _atom_sites.fract_transf_matrix[1][2] 0.0052 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010401 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013297 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id 0SG _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 301 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id 0SG _pdbx_nonpoly_scheme.auth_mon_id DIS _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C17 0SG . . . B 2 28.564 -4.843 -6.16 1 60.65 ? C17 0SG 301 A 1 HETATM 2 C C16 0SG . . . B 2 29.078 -4.443 -4.807 1 61.37 ? C16 0SG 301 A 1 HETATM 3 C C15 0SG . . . B 2 28.554 -3.074 -4.355 1 62.49 ? C15 0SG 301 A 1 HETATM 4 C C14 0SG . . . B 2 28.315 -2.1 -5.513 1 63.46 ? C14 0SG 301 A 1 HETATM 5 C C13 0SG . . . B 2 28.627 -0.626 -5.214 1 63.02 ? C13 0SG 301 A 1 HETATM 6 C C12 0SG . . . B 2 28.085 -0.12 -3.885 1 62.51 ? C12 0SG 301 A 1 HETATM 7 C C11 0SG . . . B 2 29.175 0.634 -3.138 1 63.06 ? C11 0SG 301 A 1 HETATM 8 C C10 0SG . . . B 2 28.605 1.39 -1.942 1 63.62 ? C10 0SG 301 A 1 HETATM 9 C C9 0SG . . . B 2 29.691 1.636 -0.912 1 64.51 ? C9 0SG 301 A 1 HETATM 10 C C8 0SG . . . B 2 29.155 2.133 0.431 1 65.43 ? C8 0SG 301 A 1 HETATM 11 C C7 0SG . . . B 2 28.726 3.611 0.397 1 65.69 ? C7 0SG 301 A 1 HETATM 12 C C6 0SG . . . B 2 29.847 4.653 0.307 1 65.75 ? C6 0SG 301 A 1 HETATM 13 C C5 0SG . . . B 2 30.339 5.083 1.688 1 66.7 ? C5 0SG 301 A 1 HETATM 14 C C4 0SG . . . B 2 31.65 5.823 1.555 1 67.41 ? C4 0SG 301 A 1 HETATM 15 C C3 0SG . . . B 2 31.73 6.95 0.861 1 66.82 ? C3 0SG 301 A 1 HETATM 16 C C2 0SG . . . B 2 33.075 7.6 0.745 1 67.32 ? C2 0SG 301 A 1 HETATM 17 O O1 0SG . . . B 2 33.108 8.372 -0.459 1 69.75 ? O1 0SG 301 A 1 HETATM 18 C C1 0SG . . . B 2 33.297 8.498 1.932 1 68.14 ? C1 0SG 301 A 1 HETATM 19 C C 0SG . . . B 2 34.355 9.558 1.683 1 67.67 ? C 0SG 301 A 1 HETATM 20 O O 0SG . . . B 2 35.581 8.88 1.444 1 69.88 ? O 0SG 301 A 1 HETATM 21 C C43 0SG . . . B 2 36.65 9.736 1.02 1 70.14 ? C43 0SG 301 A 1 HETATM 22 O O6 0SG . . . B 2 36.331 10.213 -0.272 1 71.05 ? O6 0SG 301 A 1 HETATM 23 C C44 0SG . . . B 2 38.012 9.055 0.82 1 69.22 ? C44 0SG 301 A 1 HETATM 24 O O3 0SG . . . B 2 38.504 8.455 2.021 1 70.18 ? O3 0SG 301 A 1 HETATM 25 C C45 0SG . . . B 2 39.047 10.078 0.404 1 68.52 ? C45 0SG 301 A 1 HETATM 26 O O4 0SG . . . B 2 40.215 9.44 -0.05 1 67.96 ? O4 0SG 301 A 1 HETATM 27 S S 0SG . . . B 2 41.692 10.02 0.384 1 69.75 ? S 0SG 301 A 1 HETATM 28 O O9 0SG . . . B 2 41.633 11.374 1.026 1 66.36 ? O9 0SG 301 A 1 HETATM 29 O O8 0SG . . . B 2 42.343 9.067 1.304 1 70.09 ? O8 0SG 301 A 1 HETATM 30 O O10 0SG . . . B 2 42.592 10.014 -0.807 1 71.46 ? O10 0SG 301 A 1 HETATM 31 C C46 0SG . . . B 2 38.617 11.035 -0.7 1 68.76 ? C46 0SG 301 A 1 HETATM 32 O O5 0SG . . . B 2 39.049 10.54 -1.979 1 67.01 ? O5 0SG 301 A 1 HETATM 33 C C47 0SG . . . B 2 37.121 11.344 -0.59 1 70.5 ? C47 0SG 301 A 1 HETATM 34 C C48 0SG . . . B 2 36.573 11.932 -1.855 1 73.54 ? C48 0SG 301 A 1 HETATM 35 O O11 0SG . . . B 2 37.419 13.025 -2.078 1 78.58 ? O11 0SG 301 A 1 HETATM 36 S S1 0SG . . . B 2 36.847 14.537 -2.321 1 84.06 ? S1 0SG 301 A 1 HETATM 37 O O13 0SG . . . B 2 36.372 15.208 -1.036 1 82.03 ? O13 0SG 301 A 1 HETATM 38 O O14 0SG . . . B 2 37.986 15.249 -2.977 1 82.88 ? O14 0SG 301 A 1 HETATM 39 O O12 0SG . . . B 2 35.779 14.406 -3.346 1 83.28 ? O12 0SG 301 A 1 HETATM 40 N N 0SG . . . B 2 33.943 7.709 2.955 1 70.16 ? N 0SG 301 A 1 HETATM 41 C C18 0SG . . . B 2 33.6 7.873 4.229 1 70.83 ? C18 0SG 301 A 1 HETATM 42 O O2 0SG . . . B 2 32.714 8.639 4.588 1 71.11 ? O2 0SG 301 A 1 HETATM 43 C C19 0SG . . . B 2 34.352 7.04 5.238 1 69.65 ? C19 0SG 301 A 1 HETATM 44 C C20 0SG . . . B 2 33.422 6.696 6.402 1 69.39 ? C20 0SG 301 A 1 HETATM 45 C C21 0SG . . . B 2 34.031 5.675 7.354 1 70.5 ? C21 0SG 301 A 1 HETATM 46 C C22 0SG . . . B 2 33.122 4.474 7.614 1 72.86 ? C22 0SG 301 A 1 HETATM 47 C C23 0SG . . . B 2 32.801 4.352 9.1 1 76.23 ? C23 0SG 301 A 1 HETATM 48 C C24 0SG . . . B 2 32.331 2.952 9.488 1 79.19 ? C24 0SG 301 A 1 HETATM 49 C C25 0SG . . . B 2 30.929 2.633 8.96 1 80.42 ? C25 0SG 301 A 1 HETATM 50 C C26 0SG . . . B 2 30.355 1.395 9.649 1 80.37 ? C26 0SG 301 A 1 HETATM 51 C C27 0SG . . . B 2 28.923 1.206 9.181 1 80.61 ? C27 0SG 301 A 1 HETATM 52 C C28 0SG . . . B 2 28.162 0.332 10.16 1 81.44 ? C28 0SG 301 A 1 HETATM 53 C C29 0SG . . . B 2 26.743 0.169 9.668 1 82.34 ? C29 0SG 301 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 53 #