data_4GVU # _model_server_result.job_id e14UYKsISBkPklUtVZNX9g _model_server_result.datetime_utc '2025-03-04 15:29:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gvu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 4GVU # _exptl.entry_id 4GVU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4GVU _cell.length_a 53.399 _cell.length_b 57.419 _cell.length_c 74.328 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GVU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 30 A CYS 45 1_555 A SG CYS 46 A CYS 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf2 A SG CYS 127 A CYS 142 1_555 A SG CYS 194 A CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 158 A CYS 173 1_555 A SG CYS 174 A CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf4 A SG CYS 184 A CYS 199 1_555 A SG CYS 214 A CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? covale ? covale1 B C 6NA 1 B 6NA 1 1_555 B N GLN 2 B GLN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.263 sing covale ? covale2 B C THR 3 B THR 3 1_555 B N DBU 4 B DBU 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.359 sing covale ? covale3 B OG1 THR 3 B THR 3 1_555 B C VAL 8 B VAL 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.366 sing covale ? covale4 B C DBU 4 B DBU 4 1_555 B N GLJ 5 B GLJ 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 sing covale ? covale5 B CD GLJ 5 B GLJ 5 1_555 B N PHE 6 B PHE 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 sing covale ? covale6 B C GLJ 5 B GLJ 5 1_555 B N PHE 6 B PHE 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 sing covale ? covale7 B C PHE 6 B PHE 6 1_555 B N YNM 7 B YNM 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 sing covale ? covale8 B C YNM 7 B YNM 7 1_555 B N VAL 8 B VAL 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 sing metalc ? metalc1 A OE1 GLU 59 A GLU 74 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc2 A OE2 GLU 59 A GLU 74 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.199 ? metalc ? metalc3 A O ASN 61 A ASN 76 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc4 A O GLN 64 A GLN 79 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc5 A OE2 GLU 69 A GLU 84 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc6 C CA CA . A CA 301 1_555 E O HOH . A HOH 495 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc7 C CA CA . A CA 301 1_555 E O HOH . A HOH 626 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4GVU _atom_sites.fract_transf_matrix[1][1] 0.018727 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017416 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013454 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 301 1 CA CA . D 4 SO4 A 1 302 2 SO4 SO4 . E 5 HOH A 1 401 1 HOH HOH . E 5 HOH A 2 402 2 HOH HOH . E 5 HOH A 3 403 3 HOH HOH . E 5 HOH A 4 404 4 HOH HOH . E 5 HOH A 5 405 5 HOH HOH . E 5 HOH A 6 406 6 HOH HOH . E 5 HOH A 7 407 7 HOH HOH . E 5 HOH A 8 408 8 HOH HOH . E 5 HOH A 9 409 9 HOH HOH . E 5 HOH A 10 410 10 HOH HOH . E 5 HOH A 11 411 11 HOH HOH . E 5 HOH A 12 412 12 HOH HOH . E 5 HOH A 13 413 13 HOH HOH . E 5 HOH A 14 414 14 HOH HOH . E 5 HOH A 15 415 15 HOH HOH . E 5 HOH A 16 416 16 HOH HOH . E 5 HOH A 17 417 17 HOH HOH . E 5 HOH A 18 418 18 HOH HOH . E 5 HOH A 19 419 19 HOH HOH . E 5 HOH A 20 420 20 HOH HOH . E 5 HOH A 21 421 21 HOH HOH . E 5 HOH A 22 422 22 HOH HOH . E 5 HOH A 23 423 23 HOH HOH . E 5 HOH A 24 424 24 HOH HOH . E 5 HOH A 25 425 25 HOH HOH . E 5 HOH A 26 426 26 HOH HOH . E 5 HOH A 27 427 27 HOH HOH . E 5 HOH A 28 428 28 HOH HOH . E 5 HOH A 29 429 29 HOH HOH . E 5 HOH A 30 430 30 HOH HOH . E 5 HOH A 31 431 31 HOH HOH . E 5 HOH A 32 432 32 HOH HOH . E 5 HOH A 33 433 33 HOH HOH . E 5 HOH A 34 434 34 HOH HOH . E 5 HOH A 35 435 35 HOH HOH . E 5 HOH A 36 436 36 HOH HOH . E 5 HOH A 37 437 37 HOH HOH . E 5 HOH A 38 438 38 HOH HOH . E 5 HOH A 39 439 39 HOH HOH . E 5 HOH A 40 440 40 HOH HOH . E 5 HOH A 41 441 41 HOH HOH . E 5 HOH A 42 442 42 HOH HOH . E 5 HOH A 43 443 43 HOH HOH . E 5 HOH A 44 444 44 HOH HOH . E 5 HOH A 45 445 45 HOH HOH . E 5 HOH A 46 446 46 HOH HOH . E 5 HOH A 47 447 48 HOH HOH . E 5 HOH A 48 448 50 HOH HOH . E 5 HOH A 49 449 52 HOH HOH . E 5 HOH A 50 450 53 HOH HOH . E 5 HOH A 51 451 54 HOH HOH . E 5 HOH A 52 452 55 HOH HOH . E 5 HOH A 53 453 56 HOH HOH . E 5 HOH A 54 454 57 HOH HOH . E 5 HOH A 55 455 58 HOH HOH . E 5 HOH A 56 456 59 HOH HOH . E 5 HOH A 57 457 60 HOH HOH . E 5 HOH A 58 458 61 HOH HOH . E 5 HOH A 59 459 62 HOH HOH . E 5 HOH A 60 460 63 HOH HOH . E 5 HOH A 61 461 64 HOH HOH . E 5 HOH A 62 462 65 HOH HOH . E 5 HOH A 63 463 66 HOH HOH . E 5 HOH A 64 464 67 HOH HOH . E 5 HOH A 65 465 69 HOH HOH . E 5 HOH A 66 466 70 HOH HOH . E 5 HOH A 67 467 71 HOH HOH . E 5 HOH A 68 468 72 HOH HOH . E 5 HOH A 69 469 74 HOH HOH . E 5 HOH A 70 470 75 HOH HOH . E 5 HOH A 71 471 76 HOH HOH . E 5 HOH A 72 472 77 HOH HOH . E 5 HOH A 73 473 80 HOH HOH . E 5 HOH A 74 474 81 HOH HOH . E 5 HOH A 75 475 82 HOH HOH . E 5 HOH A 76 476 83 HOH HOH . E 5 HOH A 77 477 85 HOH HOH . E 5 HOH A 78 478 86 HOH HOH . E 5 HOH A 79 479 87 HOH HOH . E 5 HOH A 80 480 88 HOH HOH . E 5 HOH A 81 481 89 HOH HOH . E 5 HOH A 82 482 90 HOH HOH . E 5 HOH A 83 483 91 HOH HOH . E 5 HOH A 84 484 92 HOH HOH . E 5 HOH A 85 485 93 HOH HOH . E 5 HOH A 86 486 94 HOH HOH . E 5 HOH A 87 487 95 HOH HOH . E 5 HOH A 88 488 96 HOH HOH . E 5 HOH A 89 489 98 HOH HOH . E 5 HOH A 90 490 99 HOH HOH . E 5 HOH A 91 491 100 HOH HOH . E 5 HOH A 92 492 101 HOH HOH . E 5 HOH A 93 493 102 HOH HOH . E 5 HOH A 94 494 103 HOH HOH . E 5 HOH A 95 495 104 HOH HOH . E 5 HOH A 96 496 105 HOH HOH . E 5 HOH A 97 497 106 HOH HOH . E 5 HOH A 98 498 107 HOH HOH . E 5 HOH A 99 499 108 HOH HOH . E 5 HOH A 100 500 109 HOH HOH . E 5 HOH A 101 501 110 HOH HOH . E 5 HOH A 102 502 111 HOH HOH . E 5 HOH A 103 503 112 HOH HOH . E 5 HOH A 104 504 113 HOH HOH . E 5 HOH A 105 505 114 HOH HOH . E 5 HOH A 106 506 115 HOH HOH . E 5 HOH A 107 507 116 HOH HOH . E 5 HOH A 108 508 117 HOH HOH . E 5 HOH A 109 509 118 HOH HOH . E 5 HOH A 110 510 119 HOH HOH . E 5 HOH A 111 511 120 HOH HOH . E 5 HOH A 112 512 121 HOH HOH . E 5 HOH A 113 513 123 HOH HOH . E 5 HOH A 114 514 124 HOH HOH . E 5 HOH A 115 515 125 HOH HOH . E 5 HOH A 116 516 126 HOH HOH . E 5 HOH A 117 517 127 HOH HOH . E 5 HOH A 118 518 128 HOH HOH . E 5 HOH A 119 519 129 HOH HOH . E 5 HOH A 120 520 130 HOH HOH . E 5 HOH A 121 521 131 HOH HOH . E 5 HOH A 122 522 132 HOH HOH . E 5 HOH A 123 523 133 HOH HOH . E 5 HOH A 124 524 134 HOH HOH . E 5 HOH A 125 525 135 HOH HOH . E 5 HOH A 126 526 136 HOH HOH . E 5 HOH A 127 527 138 HOH HOH . E 5 HOH A 128 528 139 HOH HOH . E 5 HOH A 129 529 140 HOH HOH . E 5 HOH A 130 530 141 HOH HOH . E 5 HOH A 131 531 142 HOH HOH . E 5 HOH A 132 532 143 HOH HOH . E 5 HOH A 133 533 144 HOH HOH . E 5 HOH A 134 534 145 HOH HOH . E 5 HOH A 135 535 146 HOH HOH . E 5 HOH A 136 536 147 HOH HOH . E 5 HOH A 137 537 148 HOH HOH . E 5 HOH A 138 538 149 HOH HOH . E 5 HOH A 139 539 150 HOH HOH . E 5 HOH A 140 540 151 HOH HOH . E 5 HOH A 141 541 152 HOH HOH . E 5 HOH A 142 542 154 HOH HOH . E 5 HOH A 143 543 155 HOH HOH . E 5 HOH A 144 544 156 HOH HOH . E 5 HOH A 145 545 157 HOH HOH . E 5 HOH A 146 546 158 HOH HOH . E 5 HOH A 147 547 159 HOH HOH . E 5 HOH A 148 548 160 HOH HOH . E 5 HOH A 149 549 161 HOH HOH . E 5 HOH A 150 550 162 HOH HOH . E 5 HOH A 151 551 163 HOH HOH . E 5 HOH A 152 552 164 HOH HOH . E 5 HOH A 153 553 165 HOH HOH . E 5 HOH A 154 554 166 HOH HOH . E 5 HOH A 155 555 167 HOH HOH . E 5 HOH A 156 556 168 HOH HOH . E 5 HOH A 157 557 169 HOH HOH . E 5 HOH A 158 558 170 HOH HOH . E 5 HOH A 159 559 171 HOH HOH . E 5 HOH A 160 560 173 HOH HOH . E 5 HOH A 161 561 174 HOH HOH . E 5 HOH A 162 562 175 HOH HOH . E 5 HOH A 163 563 176 HOH HOH . E 5 HOH A 164 564 178 HOH HOH . E 5 HOH A 165 565 179 HOH HOH . E 5 HOH A 166 566 180 HOH HOH . E 5 HOH A 167 567 181 HOH HOH . E 5 HOH A 168 568 183 HOH HOH . E 5 HOH A 169 569 184 HOH HOH . E 5 HOH A 170 570 185 HOH HOH . E 5 HOH A 171 571 186 HOH HOH . E 5 HOH A 172 572 187 HOH HOH . E 5 HOH A 173 573 188 HOH HOH . E 5 HOH A 174 574 189 HOH HOH . E 5 HOH A 175 575 190 HOH HOH . E 5 HOH A 176 576 191 HOH HOH . E 5 HOH A 177 577 192 HOH HOH . E 5 HOH A 178 578 193 HOH HOH . E 5 HOH A 179 579 194 HOH HOH . E 5 HOH A 180 580 195 HOH HOH . E 5 HOH A 181 581 198 HOH HOH . E 5 HOH A 182 582 201 HOH HOH . E 5 HOH A 183 583 202 HOH HOH . E 5 HOH A 184 584 203 HOH HOH . E 5 HOH A 185 585 205 HOH HOH . E 5 HOH A 186 586 206 HOH HOH . E 5 HOH A 187 587 207 HOH HOH . E 5 HOH A 188 588 214 HOH HOH . E 5 HOH A 189 589 215 HOH HOH . E 5 HOH A 190 590 216 HOH HOH . E 5 HOH A 191 591 217 HOH HOH . E 5 HOH A 192 592 218 HOH HOH . E 5 HOH A 193 593 222 HOH HOH . E 5 HOH A 194 594 223 HOH HOH . E 5 HOH A 195 595 224 HOH HOH . E 5 HOH A 196 596 225 HOH HOH . E 5 HOH A 197 597 227 HOH HOH . E 5 HOH A 198 598 228 HOH HOH . E 5 HOH A 199 599 229 HOH HOH . E 5 HOH A 200 600 230 HOH HOH . E 5 HOH A 201 601 231 HOH HOH . E 5 HOH A 202 602 235 HOH HOH . E 5 HOH A 203 603 239 HOH HOH . E 5 HOH A 204 604 240 HOH HOH . E 5 HOH A 205 605 241 HOH HOH . E 5 HOH A 206 606 242 HOH HOH . E 5 HOH A 207 607 244 HOH HOH . E 5 HOH A 208 608 246 HOH HOH . E 5 HOH A 209 609 247 HOH HOH . E 5 HOH A 210 610 248 HOH HOH . E 5 HOH A 211 611 249 HOH HOH . E 5 HOH A 212 612 250 HOH HOH . E 5 HOH A 213 613 251 HOH HOH . E 5 HOH A 214 614 252 HOH HOH . E 5 HOH A 215 615 253 HOH HOH . E 5 HOH A 216 616 254 HOH HOH . E 5 HOH A 217 617 255 HOH HOH . E 5 HOH A 218 618 256 HOH HOH . E 5 HOH A 219 619 258 HOH HOH . E 5 HOH A 220 620 259 HOH HOH . E 5 HOH A 221 621 260 HOH HOH . E 5 HOH A 222 622 261 HOH HOH . E 5 HOH A 223 623 262 HOH HOH . E 5 HOH A 224 624 263 HOH HOH . E 5 HOH A 225 625 264 HOH HOH . E 5 HOH A 226 626 265 HOH HOH . E 5 HOH A 227 627 266 HOH HOH . E 5 HOH A 228 628 267 HOH HOH . E 5 HOH A 229 629 268 HOH HOH . E 5 HOH A 230 630 269 HOH HOH . E 5 HOH A 231 631 270 HOH HOH . E 5 HOH A 232 632 271 HOH HOH . F 5 HOH B 1 101 211 HOH HOH . F 5 HOH B 2 102 212 HOH HOH . F 5 HOH B 3 103 213 HOH HOH . F 5 HOH B 4 104 219 HOH HOH . F 5 HOH B 5 105 232 HOH HOH . F 5 HOH B 6 106 243 HOH HOH . F 5 HOH B 7 107 245 HOH HOH . F 5 HOH B 8 108 79 HOH HOH . F 5 HOH B 9 109 137 HOH HOH . F 5 HOH B 10 110 199 HOH HOH . F 5 HOH B 11 111 208 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -4.748 _atom_site.Cartn_y -9.284 _atom_site.Cartn_z -6.463 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 21.07 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #