data_4GW2 # _model_server_result.job_id QU1stZ7S94TXV7ZmtSEXuA _model_server_result.datetime_utc '2024-11-25 03:37:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gw2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 4GW2 # _exptl.entry_id 4GW2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 132.161 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description L-ornithine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4GW2 _cell.length_a 65.393 _cell.length_b 70.312 _cell.length_c 80.319 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GW2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O1B ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc2 B O1A ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc3 C MG MG . A MG 402 1_555 F O HOH . A HOH 695 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc4 C MG MG . A MG 402 1_555 F O HOH . A HOH 696 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc5 C MG MG . A MG 402 1_555 F O HOH . A HOH 697 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc6 C MG MG . A MG 402 1_555 F O HOH . A HOH 698 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? # _chem_comp.formula 'C5 H12 N2 O2' _chem_comp.formula_weight 132.161 _chem_comp.id ORN _chem_comp.mon_nstd_flag n _chem_comp.name L-ornithine _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA ORN sing 284 n n N H ORN sing 285 n n N H2 ORN sing 286 n n CA CB ORN sing 287 n n CA C ORN sing 288 n n CA HA ORN sing 289 n n CB CG ORN sing 290 n n CB HB2 ORN sing 291 n n CB HB3 ORN sing 292 n n CG CD ORN sing 293 n n CG HG2 ORN sing 294 n n CG HG3 ORN sing 295 n n CD NE ORN sing 296 n n CD HD2 ORN sing 297 n n CD HD3 ORN sing 298 n n NE HE1 ORN sing 299 n n NE HE2 ORN sing 300 n n C O ORN doub 301 n n C OXT ORN sing 302 n n OXT HXT ORN sing 303 n n # _atom_sites.entry_id 4GW2 _atom_sites.fract_transf_matrix[1][1] 0.015292 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014222 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01245 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 401 400 ADP ADP . C 3 MG A 1 402 408 MG MG . D 4 ORN A 1 403 403 ORN ORN . E 5 NO3 A 1 404 405 NO3 NO3 . F 6 HOH A 1 501 1 HOH HOH . F 6 HOH A 2 502 2 HOH HOH . F 6 HOH A 3 503 3 HOH HOH . F 6 HOH A 4 504 4 HOH HOH . F 6 HOH A 5 505 5 HOH HOH . F 6 HOH A 6 506 6 HOH HOH . F 6 HOH A 7 507 7 HOH HOH . F 6 HOH A 8 508 8 HOH HOH . F 6 HOH A 9 509 9 HOH HOH . F 6 HOH A 10 510 10 HOH HOH . F 6 HOH A 11 511 11 HOH HOH . F 6 HOH A 12 512 12 HOH HOH . F 6 HOH A 13 513 13 HOH HOH . F 6 HOH A 14 514 14 HOH HOH . F 6 HOH A 15 515 15 HOH HOH . F 6 HOH A 16 516 16 HOH HOH . F 6 HOH A 17 517 17 HOH HOH . F 6 HOH A 18 518 18 HOH HOH . F 6 HOH A 19 519 19 HOH HOH . F 6 HOH A 20 520 20 HOH HOH . F 6 HOH A 21 521 21 HOH HOH . F 6 HOH A 22 522 22 HOH HOH . F 6 HOH A 23 523 23 HOH HOH . F 6 HOH A 24 524 24 HOH HOH . F 6 HOH A 25 525 25 HOH HOH . F 6 HOH A 26 526 26 HOH HOH . F 6 HOH A 27 527 27 HOH HOH . F 6 HOH A 28 528 28 HOH HOH . F 6 HOH A 29 529 29 HOH HOH . F 6 HOH A 30 530 30 HOH HOH . F 6 HOH A 31 531 31 HOH HOH . F 6 HOH A 32 532 32 HOH HOH . F 6 HOH A 33 533 33 HOH HOH . F 6 HOH A 34 534 34 HOH HOH . F 6 HOH A 35 535 35 HOH HOH . F 6 HOH A 36 536 36 HOH HOH . F 6 HOH A 37 537 37 HOH HOH . F 6 HOH A 38 538 38 HOH HOH . F 6 HOH A 39 539 39 HOH HOH . F 6 HOH A 40 540 40 HOH HOH . F 6 HOH A 41 541 41 HOH HOH . F 6 HOH A 42 542 42 HOH HOH . F 6 HOH A 43 543 43 HOH HOH . F 6 HOH A 44 544 44 HOH HOH . F 6 HOH A 45 545 45 HOH HOH . F 6 HOH A 46 546 46 HOH HOH . F 6 HOH A 47 547 47 HOH HOH . F 6 HOH A 48 548 48 HOH HOH . F 6 HOH A 49 549 49 HOH HOH . F 6 HOH A 50 550 50 HOH HOH . F 6 HOH A 51 551 51 HOH HOH . F 6 HOH A 52 552 52 HOH HOH . F 6 HOH A 53 553 53 HOH HOH . F 6 HOH A 54 554 54 HOH HOH . F 6 HOH A 55 555 55 HOH HOH . F 6 HOH A 56 556 56 HOH HOH . F 6 HOH A 57 557 57 HOH HOH . F 6 HOH A 58 558 58 HOH HOH . F 6 HOH A 59 559 59 HOH HOH . F 6 HOH A 60 560 60 HOH HOH . F 6 HOH A 61 561 61 HOH HOH . F 6 HOH A 62 562 62 HOH HOH . F 6 HOH A 63 563 63 HOH HOH . F 6 HOH A 64 564 64 HOH HOH . F 6 HOH A 65 565 65 HOH HOH . F 6 HOH A 66 566 66 HOH HOH . F 6 HOH A 67 567 67 HOH HOH . F 6 HOH A 68 568 68 HOH HOH . F 6 HOH A 69 569 69 HOH HOH . F 6 HOH A 70 570 70 HOH HOH . F 6 HOH A 71 571 71 HOH HOH . F 6 HOH A 72 572 72 HOH HOH . F 6 HOH A 73 573 73 HOH HOH . F 6 HOH A 74 574 74 HOH HOH . F 6 HOH A 75 575 75 HOH HOH . F 6 HOH A 76 576 76 HOH HOH . F 6 HOH A 77 577 77 HOH HOH . F 6 HOH A 78 578 79 HOH HOH . F 6 HOH A 79 579 80 HOH HOH . F 6 HOH A 80 580 81 HOH HOH . F 6 HOH A 81 581 82 HOH HOH . F 6 HOH A 82 582 83 HOH HOH . F 6 HOH A 83 583 84 HOH HOH . F 6 HOH A 84 584 85 HOH HOH . F 6 HOH A 85 585 87 HOH HOH . F 6 HOH A 86 586 88 HOH HOH . F 6 HOH A 87 587 89 HOH HOH . F 6 HOH A 88 588 90 HOH HOH . F 6 HOH A 89 589 91 HOH HOH . F 6 HOH A 90 590 92 HOH HOH . F 6 HOH A 91 591 93 HOH HOH . F 6 HOH A 92 592 94 HOH HOH . F 6 HOH A 93 593 95 HOH HOH . F 6 HOH A 94 594 96 HOH HOH . F 6 HOH A 95 595 97 HOH HOH . F 6 HOH A 96 596 98 HOH HOH . F 6 HOH A 97 597 99 HOH HOH . F 6 HOH A 98 598 100 HOH HOH . F 6 HOH A 99 599 101 HOH HOH . F 6 HOH A 100 600 102 HOH HOH . F 6 HOH A 101 601 103 HOH HOH . F 6 HOH A 102 602 104 HOH HOH . F 6 HOH A 103 603 105 HOH HOH . F 6 HOH A 104 604 106 HOH HOH . F 6 HOH A 105 605 107 HOH HOH . F 6 HOH A 106 606 108 HOH HOH . F 6 HOH A 107 607 109 HOH HOH . F 6 HOH A 108 608 110 HOH HOH . F 6 HOH A 109 609 111 HOH HOH . F 6 HOH A 110 610 112 HOH HOH . F 6 HOH A 111 611 113 HOH HOH . F 6 HOH A 112 612 114 HOH HOH . F 6 HOH A 113 613 115 HOH HOH . F 6 HOH A 114 614 116 HOH HOH . F 6 HOH A 115 615 117 HOH HOH . F 6 HOH A 116 616 118 HOH HOH . F 6 HOH A 117 617 119 HOH HOH . F 6 HOH A 118 618 120 HOH HOH . F 6 HOH A 119 619 121 HOH HOH . F 6 HOH A 120 620 122 HOH HOH . F 6 HOH A 121 621 123 HOH HOH . F 6 HOH A 122 622 124 HOH HOH . F 6 HOH A 123 623 125 HOH HOH . F 6 HOH A 124 624 126 HOH HOH . F 6 HOH A 125 625 127 HOH HOH . F 6 HOH A 126 626 128 HOH HOH . F 6 HOH A 127 627 129 HOH HOH . F 6 HOH A 128 628 130 HOH HOH . F 6 HOH A 129 629 131 HOH HOH . F 6 HOH A 130 630 132 HOH HOH . F 6 HOH A 131 631 133 HOH HOH . F 6 HOH A 132 632 134 HOH HOH . F 6 HOH A 133 633 135 HOH HOH . F 6 HOH A 134 634 136 HOH HOH . F 6 HOH A 135 635 137 HOH HOH . F 6 HOH A 136 636 138 HOH HOH . F 6 HOH A 137 637 139 HOH HOH . F 6 HOH A 138 638 140 HOH HOH . F 6 HOH A 139 639 141 HOH HOH . F 6 HOH A 140 640 142 HOH HOH . F 6 HOH A 141 641 143 HOH HOH . F 6 HOH A 142 642 144 HOH HOH . F 6 HOH A 143 643 145 HOH HOH . F 6 HOH A 144 644 146 HOH HOH . F 6 HOH A 145 645 147 HOH HOH . F 6 HOH A 146 646 148 HOH HOH . F 6 HOH A 147 647 149 HOH HOH . F 6 HOH A 148 648 150 HOH HOH . F 6 HOH A 149 649 151 HOH HOH . F 6 HOH A 150 650 152 HOH HOH . F 6 HOH A 151 651 153 HOH HOH . F 6 HOH A 152 652 154 HOH HOH . F 6 HOH A 153 653 155 HOH HOH . F 6 HOH A 154 654 156 HOH HOH . F 6 HOH A 155 655 157 HOH HOH . F 6 HOH A 156 656 158 HOH HOH . F 6 HOH A 157 657 159 HOH HOH . F 6 HOH A 158 658 160 HOH HOH . F 6 HOH A 159 659 161 HOH HOH . F 6 HOH A 160 660 162 HOH HOH . F 6 HOH A 161 661 163 HOH HOH . F 6 HOH A 162 662 164 HOH HOH . F 6 HOH A 163 663 165 HOH HOH . F 6 HOH A 164 664 166 HOH HOH . F 6 HOH A 165 665 167 HOH HOH . F 6 HOH A 166 666 168 HOH HOH . F 6 HOH A 167 667 169 HOH HOH . F 6 HOH A 168 668 170 HOH HOH . F 6 HOH A 169 669 171 HOH HOH . F 6 HOH A 170 670 172 HOH HOH . F 6 HOH A 171 671 173 HOH HOH . F 6 HOH A 172 672 174 HOH HOH . F 6 HOH A 173 673 175 HOH HOH . F 6 HOH A 174 674 176 HOH HOH . F 6 HOH A 175 675 177 HOH HOH . F 6 HOH A 176 676 178 HOH HOH . F 6 HOH A 177 677 179 HOH HOH . F 6 HOH A 178 678 180 HOH HOH . F 6 HOH A 179 679 181 HOH HOH . F 6 HOH A 180 680 183 HOH HOH . F 6 HOH A 181 681 184 HOH HOH . F 6 HOH A 182 682 185 HOH HOH . F 6 HOH A 183 683 186 HOH HOH . F 6 HOH A 184 684 187 HOH HOH . F 6 HOH A 185 685 188 HOH HOH . F 6 HOH A 186 686 189 HOH HOH . F 6 HOH A 187 687 190 HOH HOH . F 6 HOH A 188 688 191 HOH HOH . F 6 HOH A 189 689 192 HOH HOH . F 6 HOH A 190 690 193 HOH HOH . F 6 HOH A 191 691 194 HOH HOH . F 6 HOH A 192 692 195 HOH HOH . F 6 HOH A 193 693 196 HOH HOH . F 6 HOH A 194 694 197 HOH HOH . F 6 HOH A 195 695 198 HOH HOH . F 6 HOH A 196 696 199 HOH HOH . F 6 HOH A 197 697 200 HOH HOH . F 6 HOH A 198 698 201 HOH HOH . F 6 HOH A 199 699 202 HOH HOH . F 6 HOH A 200 700 203 HOH HOH . F 6 HOH A 201 701 204 HOH HOH . F 6 HOH A 202 702 205 HOH HOH . F 6 HOH A 203 703 206 HOH HOH . F 6 HOH A 204 704 207 HOH HOH . F 6 HOH A 205 705 208 HOH HOH . F 6 HOH A 206 706 209 HOH HOH . F 6 HOH A 207 707 210 HOH HOH . F 6 HOH A 208 708 211 HOH HOH . F 6 HOH A 209 709 212 HOH HOH . F 6 HOH A 210 710 213 HOH HOH . F 6 HOH A 211 711 214 HOH HOH . F 6 HOH A 212 712 215 HOH HOH . F 6 HOH A 213 713 216 HOH HOH . F 6 HOH A 214 714 217 HOH HOH . F 6 HOH A 215 715 218 HOH HOH . F 6 HOH A 216 716 219 HOH HOH . F 6 HOH A 217 717 220 HOH HOH . F 6 HOH A 218 718 221 HOH HOH . F 6 HOH A 219 719 222 HOH HOH . F 6 HOH A 220 720 223 HOH HOH . F 6 HOH A 221 721 224 HOH HOH . F 6 HOH A 222 722 225 HOH HOH . F 6 HOH A 223 723 226 HOH HOH . F 6 HOH A 224 724 227 HOH HOH . F 6 HOH A 225 725 228 HOH HOH . F 6 HOH A 226 726 229 HOH HOH . F 6 HOH A 227 727 230 HOH HOH . F 6 HOH A 228 728 231 HOH HOH . F 6 HOH A 229 729 232 HOH HOH . F 6 HOH A 230 730 234 HOH HOH . F 6 HOH A 231 731 235 HOH HOH . F 6 HOH A 232 732 236 HOH HOH . F 6 HOH A 233 733 237 HOH HOH . F 6 HOH A 234 734 238 HOH HOH . F 6 HOH A 235 735 239 HOH HOH . F 6 HOH A 236 736 240 HOH HOH . F 6 HOH A 237 737 241 HOH HOH . F 6 HOH A 238 738 242 HOH HOH . F 6 HOH A 239 739 243 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N ORN . . . D 4 33.252 4.717 40.168 1 21.3 ? N ORN 403 A 1 HETATM 2 C CA ORN . . . D 4 32.995 5.886 41.008 1 25.41 ? CA ORN 403 A 1 HETATM 3 C CB ORN . . . D 4 31.505 6.278 40.88 1 25.64 ? CB ORN 403 A 1 HETATM 4 C CG ORN . . . D 4 30.551 5.14 41.242 1 25.19 ? CG ORN 403 A 1 HETATM 5 C CD ORN . . . D 4 29.111 5.696 41.293 1 29.01 ? CD ORN 403 A 1 HETATM 6 N NE ORN . . . D 4 28.404 5.408 40.035 1 28.47 ? NE ORN 403 A 1 HETATM 7 C C ORN . . . D 4 33.285 5.52 42.513 1 27.42 ? C ORN 403 A 1 HETATM 8 O O ORN . . . D 4 33.579 4.34 42.75 1 29.98 ? O ORN 403 A 1 HETATM 9 O OXT ORN . . . D 4 33.187 6.444 43.35 1 29.07 ? OXT ORN 403 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #