data_4GW3 # _model_server_result.job_id GizbRCDDkLxexbiXqoL56w _model_server_result.datetime_utc '2024-11-23 18:27:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gw3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 4GW3 # _exptl.entry_id 4GW3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4GW3 _cell.length_a 65.438 _cell.length_b 65.438 _cell.length_c 63.966 _cell.Z_PDB 3 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GW3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 70 A ASN 50 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.138 ? metalc ? metalc2 A OE1 GLU 71 A GLU 51 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.705 ? metalc ? metalc3 A OD1 ASN 230 A ASN 210 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc4 A OD2 ASP 233 A ASP 213 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc5 A OD1 ASP 276 A ASP 256 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc6 A O GLN 280 A GLN 260 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc7 A O LEU 284 A LEU 264 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc8 B CA CA . A CA 401 1_555 H O HOH . A HOH 537 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc9 C CA CA . A CA 402 1_555 H O HOH . A HOH 659 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.781 ? metalc ? metalc10 C CA CA . A CA 402 1_555 H O HOH . A HOH 666 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 4GW3 _atom_sites.fract_transf_matrix[1][1] 0.015282 _atom_sites.fract_transf_matrix[1][2] 0.008823 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017646 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015633 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 401 401 CA CA . C 2 CA A 1 402 402 CA CA . D 3 IPA A 1 403 501 IPA IPA . E 4 GOL A 1 404 601 GOL GOL . F 5 1PE A 1 405 701 1PE 1PE . G 5 1PE A 1 406 702 1PE 1PE . H 6 HOH A 1 501 1 HOH HOH . H 6 HOH A 2 502 3 HOH HOH . H 6 HOH A 3 503 4 HOH HOH . H 6 HOH A 4 504 6 HOH HOH . H 6 HOH A 5 505 8 HOH HOH . H 6 HOH A 6 506 9 HOH HOH . H 6 HOH A 7 507 10 HOH HOH . H 6 HOH A 8 508 11 HOH HOH . H 6 HOH A 9 509 12 HOH HOH . H 6 HOH A 10 510 13 HOH HOH . H 6 HOH A 11 511 14 HOH HOH . H 6 HOH A 12 512 15 HOH HOH . H 6 HOH A 13 513 16 HOH HOH . H 6 HOH A 14 514 17 HOH HOH . H 6 HOH A 15 515 18 HOH HOH . H 6 HOH A 16 516 19 HOH HOH . H 6 HOH A 17 517 20 HOH HOH . H 6 HOH A 18 518 21 HOH HOH . H 6 HOH A 19 519 22 HOH HOH . H 6 HOH A 20 520 23 HOH HOH . H 6 HOH A 21 521 24 HOH HOH . H 6 HOH A 22 522 25 HOH HOH . H 6 HOH A 23 523 26 HOH HOH . H 6 HOH A 24 524 27 HOH HOH . H 6 HOH A 25 525 28 HOH HOH . H 6 HOH A 26 526 29 HOH HOH . H 6 HOH A 27 527 30 HOH HOH . H 6 HOH A 28 528 31 HOH HOH . H 6 HOH A 29 529 32 HOH HOH . H 6 HOH A 30 530 33 HOH HOH . H 6 HOH A 31 531 34 HOH HOH . H 6 HOH A 32 532 35 HOH HOH . H 6 HOH A 33 533 36 HOH HOH . H 6 HOH A 34 534 37 HOH HOH . H 6 HOH A 35 535 38 HOH HOH . H 6 HOH A 36 536 39 HOH HOH . H 6 HOH A 37 537 40 HOH HOH . H 6 HOH A 38 538 41 HOH HOH . H 6 HOH A 39 539 42 HOH HOH . H 6 HOH A 40 540 43 HOH HOH . H 6 HOH A 41 541 44 HOH HOH . H 6 HOH A 42 542 45 HOH HOH . H 6 HOH A 43 543 46 HOH HOH . H 6 HOH A 44 544 47 HOH HOH . H 6 HOH A 45 545 48 HOH HOH . H 6 HOH A 46 546 49 HOH HOH . H 6 HOH A 47 547 50 HOH HOH . H 6 HOH A 48 548 51 HOH HOH . H 6 HOH A 49 549 52 HOH HOH . H 6 HOH A 50 550 53 HOH HOH . H 6 HOH A 51 551 54 HOH HOH . H 6 HOH A 52 552 55 HOH HOH . H 6 HOH A 53 553 56 HOH HOH . H 6 HOH A 54 554 57 HOH HOH . H 6 HOH A 55 555 58 HOH HOH . H 6 HOH A 56 556 59 HOH HOH . H 6 HOH A 57 557 60 HOH HOH . H 6 HOH A 58 558 61 HOH HOH . H 6 HOH A 59 559 62 HOH HOH . H 6 HOH A 60 560 63 HOH HOH . H 6 HOH A 61 561 64 HOH HOH . H 6 HOH A 62 562 65 HOH HOH . H 6 HOH A 63 563 66 HOH HOH . H 6 HOH A 64 564 67 HOH HOH . H 6 HOH A 65 565 68 HOH HOH . H 6 HOH A 66 566 70 HOH HOH . H 6 HOH A 67 567 71 HOH HOH . H 6 HOH A 68 568 72 HOH HOH . H 6 HOH A 69 569 73 HOH HOH . H 6 HOH A 70 570 74 HOH HOH . H 6 HOH A 71 571 75 HOH HOH . H 6 HOH A 72 572 76 HOH HOH . H 6 HOH A 73 573 78 HOH HOH . H 6 HOH A 74 574 79 HOH HOH . H 6 HOH A 75 575 80 HOH HOH . H 6 HOH A 76 576 82 HOH HOH . H 6 HOH A 77 577 83 HOH HOH . H 6 HOH A 78 578 84 HOH HOH . H 6 HOH A 79 579 86 HOH HOH . H 6 HOH A 80 580 87 HOH HOH . H 6 HOH A 81 581 88 HOH HOH . H 6 HOH A 82 582 89 HOH HOH . H 6 HOH A 83 583 94 HOH HOH . H 6 HOH A 84 584 97 HOH HOH . H 6 HOH A 85 585 98 HOH HOH . H 6 HOH A 86 586 99 HOH HOH . H 6 HOH A 87 587 100 HOH HOH . H 6 HOH A 88 588 101 HOH HOH . H 6 HOH A 89 589 102 HOH HOH . H 6 HOH A 90 590 103 HOH HOH . H 6 HOH A 91 591 107 HOH HOH . H 6 HOH A 92 592 109 HOH HOH . H 6 HOH A 93 593 110 HOH HOH . H 6 HOH A 94 594 111 HOH HOH . H 6 HOH A 95 595 112 HOH HOH . H 6 HOH A 96 596 113 HOH HOH . H 6 HOH A 97 597 114 HOH HOH . H 6 HOH A 98 598 116 HOH HOH . H 6 HOH A 99 599 117 HOH HOH . H 6 HOH A 100 600 118 HOH HOH . H 6 HOH A 101 601 119 HOH HOH . H 6 HOH A 102 602 120 HOH HOH . H 6 HOH A 103 603 121 HOH HOH . H 6 HOH A 104 604 123 HOH HOH . H 6 HOH A 105 605 124 HOH HOH . H 6 HOH A 106 606 125 HOH HOH . H 6 HOH A 107 607 126 HOH HOH . H 6 HOH A 108 608 127 HOH HOH . H 6 HOH A 109 609 128 HOH HOH . H 6 HOH A 110 610 129 HOH HOH . H 6 HOH A 111 611 131 HOH HOH . H 6 HOH A 112 612 133 HOH HOH . H 6 HOH A 113 613 134 HOH HOH . H 6 HOH A 114 614 135 HOH HOH . H 6 HOH A 115 615 136 HOH HOH . H 6 HOH A 116 616 137 HOH HOH . H 6 HOH A 117 617 138 HOH HOH . H 6 HOH A 118 618 139 HOH HOH . H 6 HOH A 119 619 140 HOH HOH . H 6 HOH A 120 620 141 HOH HOH . H 6 HOH A 121 621 142 HOH HOH . H 6 HOH A 122 622 143 HOH HOH . H 6 HOH A 123 623 144 HOH HOH . H 6 HOH A 124 624 145 HOH HOH . H 6 HOH A 125 625 146 HOH HOH . H 6 HOH A 126 626 147 HOH HOH . H 6 HOH A 127 627 148 HOH HOH . H 6 HOH A 128 628 149 HOH HOH . H 6 HOH A 129 629 150 HOH HOH . H 6 HOH A 130 630 151 HOH HOH . H 6 HOH A 131 631 152 HOH HOH . H 6 HOH A 132 632 153 HOH HOH . H 6 HOH A 133 633 155 HOH HOH . H 6 HOH A 134 634 159 HOH HOH . H 6 HOH A 135 635 160 HOH HOH . H 6 HOH A 136 636 161 HOH HOH . H 6 HOH A 137 637 163 HOH HOH . H 6 HOH A 138 638 164 HOH HOH . H 6 HOH A 139 639 168 HOH HOH . H 6 HOH A 140 640 169 HOH HOH . H 6 HOH A 141 641 171 HOH HOH . H 6 HOH A 142 642 172 HOH HOH . H 6 HOH A 143 643 173 HOH HOH . H 6 HOH A 144 644 174 HOH HOH . H 6 HOH A 145 645 175 HOH HOH . H 6 HOH A 146 646 176 HOH HOH . H 6 HOH A 147 647 177 HOH HOH . H 6 HOH A 148 648 179 HOH HOH . H 6 HOH A 149 649 180 HOH HOH . H 6 HOH A 150 650 181 HOH HOH . H 6 HOH A 151 651 182 HOH HOH . H 6 HOH A 152 652 183 HOH HOH . H 6 HOH A 153 653 184 HOH HOH . H 6 HOH A 154 654 185 HOH HOH . H 6 HOH A 155 655 186 HOH HOH . H 6 HOH A 156 656 187 HOH HOH . H 6 HOH A 157 657 189 HOH HOH . H 6 HOH A 158 658 192 HOH HOH . H 6 HOH A 159 659 193 HOH HOH . H 6 HOH A 160 660 194 HOH HOH . H 6 HOH A 161 661 195 HOH HOH . H 6 HOH A 162 662 196 HOH HOH . H 6 HOH A 163 663 198 HOH HOH . H 6 HOH A 164 664 199 HOH HOH . H 6 HOH A 165 665 203 HOH HOH . H 6 HOH A 166 666 206 HOH HOH . H 6 HOH A 167 667 207 HOH HOH . H 6 HOH A 168 668 208 HOH HOH . H 6 HOH A 169 669 209 HOH HOH . H 6 HOH A 170 670 211 HOH HOH . H 6 HOH A 171 671 212 HOH HOH . H 6 HOH A 172 672 213 HOH HOH . H 6 HOH A 173 673 214 HOH HOH . H 6 HOH A 174 674 216 HOH HOH . H 6 HOH A 175 675 217 HOH HOH . H 6 HOH A 176 676 219 HOH HOH . H 6 HOH A 177 677 220 HOH HOH . H 6 HOH A 178 678 221 HOH HOH . H 6 HOH A 179 679 222 HOH HOH . H 6 HOH A 180 680 225 HOH HOH . H 6 HOH A 181 681 226 HOH HOH . H 6 HOH A 182 682 227 HOH HOH . H 6 HOH A 183 683 240 HOH HOH . H 6 HOH A 184 684 241 HOH HOH . H 6 HOH A 185 685 245 HOH HOH . H 6 HOH A 186 686 249 HOH HOH . H 6 HOH A 187 687 250 HOH HOH . H 6 HOH A 188 688 252 HOH HOH . H 6 HOH A 189 689 258 HOH HOH . H 6 HOH A 190 690 259 HOH HOH . H 6 HOH A 191 691 262 HOH HOH . H 6 HOH A 192 692 263 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . . . F 5 3.098 -2.077 12.752 1 52.08 ? OH2 1PE 405 A 1 HETATM 2 C C12 1PE . . . F 5 4.488 -1.771 12.923 1 51.76 ? C12 1PE 405 A 1 HETATM 3 C C22 1PE . . . F 5 5.295 -2.337 11.759 1 51.91 ? C22 1PE 405 A 1 HETATM 4 O OH3 1PE . . . F 5 4.748 -1.868 10.522 1 51.45 ? OH3 1PE 405 A 1 HETATM 5 C C13 1PE . . . F 5 5.977 0.166 10.044 1 50.09 ? C13 1PE 405 A 1 HETATM 6 C C23 1PE . . . F 5 5.708 -1.281 9.639 1 50.36 ? C23 1PE 405 A 1 HETATM 7 O OH4 1PE . . . F 5 4.808 0.959 9.82 1 48.99 ? OH4 1PE 405 A 1 HETATM 8 C C14 1PE . . . F 5 5.508 3.172 9.101 1 47.46 ? C14 1PE 405 A 1 HETATM 9 C C24 1PE . . . F 5 4.901 1.833 8.696 1 47.79 ? C24 1PE 405 A 1 HETATM 10 O OH5 1PE . . . F 5 4.818 3.73 10.223 1 47.26 ? OH5 1PE 405 A 1 HETATM 11 C C15 1PE . . . F 5 4.156 5.747 11.411 1 47.38 ? C15 1PE 405 A 1 HETATM 12 C C25 1PE . . . F 5 4.512 5.118 10.066 1 47.22 ? C25 1PE 405 A 1 HETATM 13 O OH6 1PE . . . F 5 5.334 6.206 12.077 1 47.77 ? OH6 1PE 405 A 1 HETATM 14 C C16 1PE . . . F 5 7.002 7.915 12.422 1 48 ? C16 1PE 405 A 1 HETATM 15 C C26 1PE . . . F 5 5.703 7.539 11.722 1 47.96 ? C26 1PE 405 A 1 HETATM 16 O OH7 1PE . . . F 5 7.689 8.914 11.659 1 48.84 ? OH7 1PE 405 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 16 #