data_4GW4 # _model_server_result.job_id n3zYCTVcxNQojYYxe-XfkA _model_server_result.datetime_utc '2024-12-31 04:36:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gw4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 4GW4 # _exptl.entry_id 4GW4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.75 _cell.angle_gamma 90 _cell.entry_id 4GW4 _cell.length_a 64.57 _cell.length_b 154.88 _cell.length_c 74.24 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GW4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H 1 1 C,D,F,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 84 L CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf2 A SG CYS 126 L CYS 123 1_555 A SG CYS 186 L CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 100 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf4 B SG CYS 150 H CYS 146 1_555 B SG CYS 206 H CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf5 C SG CYS 22 A CYS 22 1_555 C SG CYS 100 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf6 C SG CYS 150 A CYS 146 1_555 C SG CYS 206 A CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf7 D SG CYS 23 B CYS 23 1_555 D SG CYS 84 B CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf8 D SG CYS 126 B CYS 123 1_555 D SG CYS 186 B CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 A ND2 ASN 68 L ASN 70 1_555 E C1 NAG . L NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale2 B C PCA 1 H PCA 1 1_555 B N VAL 2 H VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 D ND2 ASN 68 B ASN 70 1_555 F C1 NAG . B NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4GW4 _atom_sites.fract_transf_matrix[1][1] 0.015487 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005559 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006457 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014311 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAG L 1 301 1 NAG NAG . F 3 NAG B 1 301 1 NAG NAG . G 4 HOH L 1 401 3 HOH HOH . G 4 HOH L 2 402 6 HOH HOH . G 4 HOH L 3 403 7 HOH HOH . G 4 HOH L 4 404 8 HOH HOH . G 4 HOH L 5 405 10 HOH HOH . G 4 HOH L 6 406 11 HOH HOH . G 4 HOH L 7 407 13 HOH HOH . G 4 HOH L 8 408 21 HOH HOH . G 4 HOH L 9 409 24 HOH HOH . G 4 HOH L 10 410 25 HOH HOH . G 4 HOH L 11 411 26 HOH HOH . G 4 HOH L 12 412 27 HOH HOH . G 4 HOH L 13 413 31 HOH HOH . G 4 HOH L 14 414 34 HOH HOH . G 4 HOH L 15 415 35 HOH HOH . G 4 HOH L 16 416 40 HOH HOH . G 4 HOH L 17 417 44 HOH HOH . G 4 HOH L 18 418 47 HOH HOH . G 4 HOH L 19 419 51 HOH HOH . G 4 HOH L 20 420 53 HOH HOH . G 4 HOH L 21 421 55 HOH HOH . G 4 HOH L 22 422 62 HOH HOH . G 4 HOH L 23 423 65 HOH HOH . G 4 HOH L 24 424 71 HOH HOH . G 4 HOH L 25 425 84 HOH HOH . G 4 HOH L 26 426 85 HOH HOH . G 4 HOH L 27 427 86 HOH HOH . G 4 HOH L 28 428 98 HOH HOH . G 4 HOH L 29 429 100 HOH HOH . G 4 HOH L 30 430 109 HOH HOH . G 4 HOH L 31 431 110 HOH HOH . G 4 HOH L 32 432 113 HOH HOH . G 4 HOH L 33 433 116 HOH HOH . G 4 HOH L 34 434 118 HOH HOH . G 4 HOH L 35 435 120 HOH HOH . G 4 HOH L 36 436 124 HOH HOH . G 4 HOH L 37 437 125 HOH HOH . G 4 HOH L 38 438 128 HOH HOH . G 4 HOH L 39 439 129 HOH HOH . G 4 HOH L 40 440 130 HOH HOH . G 4 HOH L 41 441 131 HOH HOH . G 4 HOH L 42 442 139 HOH HOH . G 4 HOH L 43 443 143 HOH HOH . G 4 HOH L 44 444 144 HOH HOH . G 4 HOH L 45 445 145 HOH HOH . G 4 HOH L 46 446 147 HOH HOH . G 4 HOH L 47 447 149 HOH HOH . G 4 HOH L 48 448 159 HOH HOH . G 4 HOH L 49 449 161 HOH HOH . G 4 HOH L 50 450 165 HOH HOH . G 4 HOH L 51 451 169 HOH HOH . G 4 HOH L 52 452 176 HOH HOH . G 4 HOH L 53 453 180 HOH HOH . G 4 HOH L 54 454 187 HOH HOH . G 4 HOH L 55 455 189 HOH HOH . H 4 HOH H 1 301 12 HOH HOH . H 4 HOH H 2 302 17 HOH HOH . H 4 HOH H 3 303 33 HOH HOH . H 4 HOH H 4 304 38 HOH HOH . H 4 HOH H 5 305 41 HOH HOH . H 4 HOH H 6 306 42 HOH HOH . H 4 HOH H 7 307 45 HOH HOH . H 4 HOH H 8 308 48 HOH HOH . H 4 HOH H 9 309 61 HOH HOH . H 4 HOH H 10 310 68 HOH HOH . H 4 HOH H 11 311 72 HOH HOH . H 4 HOH H 12 312 75 HOH HOH . H 4 HOH H 13 313 88 HOH HOH . H 4 HOH H 14 314 91 HOH HOH . H 4 HOH H 15 315 93 HOH HOH . H 4 HOH H 16 316 95 HOH HOH . H 4 HOH H 17 317 99 HOH HOH . H 4 HOH H 18 318 103 HOH HOH . H 4 HOH H 19 319 106 HOH HOH . H 4 HOH H 20 320 112 HOH HOH . H 4 HOH H 21 321 114 HOH HOH . H 4 HOH H 22 322 122 HOH HOH . H 4 HOH H 23 323 135 HOH HOH . H 4 HOH H 24 324 141 HOH HOH . H 4 HOH H 25 325 151 HOH HOH . H 4 HOH H 26 326 152 HOH HOH . H 4 HOH H 27 327 154 HOH HOH . H 4 HOH H 28 328 162 HOH HOH . H 4 HOH H 29 329 166 HOH HOH . H 4 HOH H 30 330 170 HOH HOH . H 4 HOH H 31 331 174 HOH HOH . H 4 HOH H 32 332 181 HOH HOH . H 4 HOH H 33 333 195 HOH HOH . H 4 HOH H 34 334 196 HOH HOH . H 4 HOH H 35 335 197 HOH HOH . H 4 HOH H 36 336 198 HOH HOH . I 4 HOH A 1 301 1 HOH HOH . I 4 HOH A 2 302 2 HOH HOH . I 4 HOH A 3 303 9 HOH HOH . I 4 HOH A 4 304 20 HOH HOH . I 4 HOH A 5 305 29 HOH HOH . I 4 HOH A 6 306 30 HOH HOH . I 4 HOH A 7 307 46 HOH HOH . I 4 HOH A 8 308 52 HOH HOH . I 4 HOH A 9 309 54 HOH HOH . I 4 HOH A 10 310 56 HOH HOH . I 4 HOH A 11 311 57 HOH HOH . I 4 HOH A 12 312 67 HOH HOH . I 4 HOH A 13 313 69 HOH HOH . I 4 HOH A 14 314 70 HOH HOH . I 4 HOH A 15 315 74 HOH HOH . I 4 HOH A 16 316 77 HOH HOH . I 4 HOH A 17 317 80 HOH HOH . I 4 HOH A 18 318 81 HOH HOH . I 4 HOH A 19 319 89 HOH HOH . I 4 HOH A 20 320 90 HOH HOH . I 4 HOH A 21 321 92 HOH HOH . I 4 HOH A 22 322 96 HOH HOH . I 4 HOH A 23 323 101 HOH HOH . I 4 HOH A 24 324 108 HOH HOH . I 4 HOH A 25 325 119 HOH HOH . I 4 HOH A 26 326 121 HOH HOH . I 4 HOH A 27 327 123 HOH HOH . I 4 HOH A 28 328 136 HOH HOH . I 4 HOH A 29 329 140 HOH HOH . I 4 HOH A 30 330 142 HOH HOH . I 4 HOH A 31 331 146 HOH HOH . I 4 HOH A 32 332 148 HOH HOH . I 4 HOH A 33 333 153 HOH HOH . I 4 HOH A 34 334 157 HOH HOH . I 4 HOH A 35 335 160 HOH HOH . I 4 HOH A 36 336 171 HOH HOH . I 4 HOH A 37 337 178 HOH HOH . I 4 HOH A 38 338 179 HOH HOH . I 4 HOH A 39 339 182 HOH HOH . I 4 HOH A 40 340 186 HOH HOH . I 4 HOH A 41 341 188 HOH HOH . I 4 HOH A 42 342 191 HOH HOH . J 4 HOH B 1 401 4 HOH HOH . J 4 HOH B 2 402 5 HOH HOH . J 4 HOH B 3 403 14 HOH HOH . J 4 HOH B 4 404 15 HOH HOH . J 4 HOH B 5 405 16 HOH HOH . J 4 HOH B 6 406 18 HOH HOH . J 4 HOH B 7 407 19 HOH HOH . J 4 HOH B 8 408 22 HOH HOH . J 4 HOH B 9 409 23 HOH HOH . J 4 HOH B 10 410 28 HOH HOH . J 4 HOH B 11 411 32 HOH HOH . J 4 HOH B 12 412 36 HOH HOH . J 4 HOH B 13 413 37 HOH HOH . J 4 HOH B 14 414 39 HOH HOH . J 4 HOH B 15 415 43 HOH HOH . J 4 HOH B 16 416 49 HOH HOH . J 4 HOH B 17 417 50 HOH HOH . J 4 HOH B 18 418 58 HOH HOH . J 4 HOH B 19 419 59 HOH HOH . J 4 HOH B 20 420 60 HOH HOH . J 4 HOH B 21 421 63 HOH HOH . J 4 HOH B 22 422 64 HOH HOH . J 4 HOH B 23 423 66 HOH HOH . J 4 HOH B 24 424 73 HOH HOH . J 4 HOH B 25 425 76 HOH HOH . J 4 HOH B 26 426 78 HOH HOH . J 4 HOH B 27 427 79 HOH HOH . J 4 HOH B 28 428 82 HOH HOH . J 4 HOH B 29 429 83 HOH HOH . J 4 HOH B 30 430 87 HOH HOH . J 4 HOH B 31 431 94 HOH HOH . J 4 HOH B 32 432 97 HOH HOH . J 4 HOH B 33 433 102 HOH HOH . J 4 HOH B 34 434 104 HOH HOH . J 4 HOH B 35 435 105 HOH HOH . J 4 HOH B 36 436 107 HOH HOH . J 4 HOH B 37 437 111 HOH HOH . J 4 HOH B 38 438 115 HOH HOH . J 4 HOH B 39 439 117 HOH HOH . J 4 HOH B 40 440 126 HOH HOH . J 4 HOH B 41 441 127 HOH HOH . J 4 HOH B 42 442 132 HOH HOH . J 4 HOH B 43 443 133 HOH HOH . J 4 HOH B 44 444 134 HOH HOH . J 4 HOH B 45 445 137 HOH HOH . J 4 HOH B 46 446 138 HOH HOH . J 4 HOH B 47 447 150 HOH HOH . J 4 HOH B 48 448 155 HOH HOH . J 4 HOH B 49 449 156 HOH HOH . J 4 HOH B 50 450 158 HOH HOH . J 4 HOH B 51 451 163 HOH HOH . J 4 HOH B 52 452 164 HOH HOH . J 4 HOH B 53 453 167 HOH HOH . J 4 HOH B 54 454 168 HOH HOH . J 4 HOH B 55 455 172 HOH HOH . J 4 HOH B 56 456 173 HOH HOH . J 4 HOH B 57 457 175 HOH HOH . J 4 HOH B 58 458 177 HOH HOH . J 4 HOH B 59 459 183 HOH HOH . J 4 HOH B 60 460 184 HOH HOH . J 4 HOH B 61 461 185 HOH HOH . J 4 HOH B 62 462 190 HOH HOH . J 4 HOH B 63 463 192 HOH HOH . J 4 HOH B 64 464 193 HOH HOH . J 4 HOH B 65 465 194 HOH HOH . J 4 HOH B 66 466 199 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . F 3 -39.41 -34.079 -21.464 1 49.98 ? C1 NAG 301 B 1 HETATM 2 C C2 NAG . . . F 3 -40.175 -35.335 -21.909 1 77.01 ? C2 NAG 301 B 1 HETATM 3 C C3 NAG . . . F 3 -41.565 -35.078 -22.513 1 79.23 ? C3 NAG 301 B 1 HETATM 4 C C4 NAG . . . F 3 -42.282 -33.868 -21.922 1 95.7 ? C4 NAG 301 B 1 HETATM 5 C C5 NAG . . . F 3 -41.302 -32.721 -21.715 1 85.84 ? C5 NAG 301 B 1 HETATM 6 C C6 NAG . . . F 3 -42.002 -31.488 -21.144 1 72.39 ? C6 NAG 301 B 1 HETATM 7 C C7 NAG . . . F 3 -38.91 -37.312 -22.62 1 94.26 ? C7 NAG 301 B 1 HETATM 8 C C8 NAG . . . F 3 -37.455 -37.555 -22.88 1 64.13 ? C8 NAG 301 B 1 HETATM 9 N N2 NAG . . . F 3 -39.361 -36.078 -22.864 1 91.77 ? N2 NAG 301 B 1 HETATM 10 O O3 NAG . . . F 3 -42.391 -36.211 -22.32 1 76.14 ? O3 NAG 301 B 1 HETATM 11 O O4 NAG . . . F 3 -43.339 -33.465 -22.773 1 83.44 ? O4 NAG 301 B 1 HETATM 12 O O5 NAG . . . F 3 -40.281 -33.158 -20.847 1 71.67 ? O5 NAG 301 B 1 HETATM 13 O O6 NAG . . . F 3 -41.054 -30.571 -20.647 1 79.19 ? O6 NAG 301 B 1 HETATM 14 O O7 NAG . . . F 3 -39.626 -38.227 -22.206 1 104.05 ? O7 NAG 301 B 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #