data_4GWI # _model_server_result.job_id v4_i2W8lOzEg9hF6gt49-Q _model_server_result.datetime_utc '2024-11-08 07:12:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gwi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":203}' # _entry.id 4GWI # _exptl.entry_id 4GWI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4GWI _cell.length_a 67.097 _cell.length_b 67.097 _cell.length_c 99.432 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GWI _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 E N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 GAL NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 FUC GAL C1 O1 . O2 HO2 . sing 3 ? 2 4 1 FUC NAG C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG B 1 BDZ 2 n B GAL 2 B 2 GAL B 1 BDZ 2 n B FUC 3 B 3 FUC B 1 BDZ 2 n B FUC 4 B 4 FUC B 1 BDZ # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O4 NAG . B NAG 1 1_555 B C1 GAL . B GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.386 sing covale ? covale2 B O3 NAG . B NAG 1 1_555 B C1 FUC . B FUC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.392 sing covale ? covale3 B O2 GAL . B GAL 2 1_555 B C1 FUC . B FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 sing metalc ? metalc1 A OE1 GLN 17 A GLN 54 1_555 E MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc2 A O ARG 31 A ARG 68 1_555 F CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc3 A OD1 ASP 34 A ASP 71 1_555 F CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc4 A O ASN 36 A ASN 73 1_555 F CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc5 A OG SER 45 A SER 82 1_555 F CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc6 A O SER 45 A SER 82 1_555 F CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc7 A OD2 ASP 60 A ASP 97 1_555 E MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc8 A O ALA 139 A ALA 176 1_555 F CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc9 A OE1 GLU 140 A GLU 177 1_555 F CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc10 C MG MG . A MG 201 1_555 G O HOH . A HOH 1125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc11 C MG MG . A MG 201 1_555 G O HOH . A HOH 1211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc12 C MG MG . A MG 201 1_555 G O HOH . A HOH 1213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc13 C MG MG . A MG 201 1_555 G O HOH . A HOH 1214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc14 C MG MG . A MG 201 1_555 G O HOH . A HOH 1215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc15 E MG MG . A MG 203 1_555 G O HOH . A HOH 1175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc16 E MG MG . A MG 203 1_555 G O HOH . A HOH 1177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc17 E MG MG . A MG 203 1_555 G O HOH . A HOH 1193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.86 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4GWI _atom_sites.fract_transf_matrix[1][1] 0.014904 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014904 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010057 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 201 202 MG MG . D 4 GOL A 1 202 203 GOL GOL . E 3 MG A 1 203 204 MG MG . F 5 CA A 1 204 205 CA CA . G 6 HOH A 1 1101 1101 HOH HOH . G 6 HOH A 2 1102 1102 HOH HOH . G 6 HOH A 3 1103 1103 HOH HOH . G 6 HOH A 4 1104 1104 HOH HOH . G 6 HOH A 5 1105 1105 HOH HOH . G 6 HOH A 6 1106 1106 HOH HOH . G 6 HOH A 7 1107 1107 HOH HOH . G 6 HOH A 8 1108 1108 HOH HOH . G 6 HOH A 9 1109 1109 HOH HOH . G 6 HOH A 10 1110 1110 HOH HOH . G 6 HOH A 11 1111 1111 HOH HOH . G 6 HOH A 12 1112 1112 HOH HOH . G 6 HOH A 13 1113 1113 HOH HOH . G 6 HOH A 14 1114 1114 HOH HOH . G 6 HOH A 15 1115 1115 HOH HOH . G 6 HOH A 16 1116 1117 HOH HOH . G 6 HOH A 17 1117 1118 HOH HOH . G 6 HOH A 18 1118 1119 HOH HOH . G 6 HOH A 19 1119 1120 HOH HOH . G 6 HOH A 20 1120 1121 HOH HOH . G 6 HOH A 21 1121 1122 HOH HOH . G 6 HOH A 22 1122 1124 HOH HOH . G 6 HOH A 23 1123 1125 HOH HOH . G 6 HOH A 24 1124 1126 HOH HOH . G 6 HOH A 25 1125 1127 HOH HOH . G 6 HOH A 26 1126 1128 HOH HOH . G 6 HOH A 27 1127 1129 HOH HOH . G 6 HOH A 28 1128 1130 HOH HOH . G 6 HOH A 29 1129 1132 HOH HOH . G 6 HOH A 30 1130 1133 HOH HOH . G 6 HOH A 31 1131 1135 HOH HOH . G 6 HOH A 32 1132 1136 HOH HOH . G 6 HOH A 33 1133 1137 HOH HOH . G 6 HOH A 34 1134 1138 HOH HOH . G 6 HOH A 35 1135 1139 HOH HOH . G 6 HOH A 36 1136 1140 HOH HOH . G 6 HOH A 37 1137 1141 HOH HOH . G 6 HOH A 38 1138 1142 HOH HOH . G 6 HOH A 39 1139 1143 HOH HOH . G 6 HOH A 40 1140 1144 HOH HOH . G 6 HOH A 41 1141 1145 HOH HOH . G 6 HOH A 42 1142 1146 HOH HOH . G 6 HOH A 43 1143 1147 HOH HOH . G 6 HOH A 44 1144 1148 HOH HOH . G 6 HOH A 45 1145 1149 HOH HOH . G 6 HOH A 46 1146 1151 HOH HOH . G 6 HOH A 47 1147 1152 HOH HOH . G 6 HOH A 48 1148 1153 HOH HOH . G 6 HOH A 49 1149 1154 HOH HOH . G 6 HOH A 50 1150 1155 HOH HOH . G 6 HOH A 51 1151 1156 HOH HOH . G 6 HOH A 52 1152 1157 HOH HOH . G 6 HOH A 53 1153 1158 HOH HOH . G 6 HOH A 54 1154 1159 HOH HOH . G 6 HOH A 55 1155 1160 HOH HOH . G 6 HOH A 56 1156 1161 HOH HOH . G 6 HOH A 57 1157 1162 HOH HOH . G 6 HOH A 58 1158 1163 HOH HOH . G 6 HOH A 59 1159 1164 HOH HOH . G 6 HOH A 60 1160 1165 HOH HOH . G 6 HOH A 61 1161 1166 HOH HOH . G 6 HOH A 62 1162 1167 HOH HOH . G 6 HOH A 63 1163 1168 HOH HOH . G 6 HOH A 64 1164 1169 HOH HOH . G 6 HOH A 65 1165 1170 HOH HOH . G 6 HOH A 66 1166 1171 HOH HOH . G 6 HOH A 67 1167 1172 HOH HOH . G 6 HOH A 68 1168 1173 HOH HOH . G 6 HOH A 69 1169 1174 HOH HOH . G 6 HOH A 70 1170 1175 HOH HOH . G 6 HOH A 71 1171 1176 HOH HOH . G 6 HOH A 72 1172 1177 HOH HOH . G 6 HOH A 73 1173 1178 HOH HOH . G 6 HOH A 74 1174 1179 HOH HOH . G 6 HOH A 75 1175 1180 HOH HOH . G 6 HOH A 76 1176 1181 HOH HOH . G 6 HOH A 77 1177 1182 HOH HOH . G 6 HOH A 78 1178 1183 HOH HOH . G 6 HOH A 79 1179 1184 HOH HOH . G 6 HOH A 80 1180 1185 HOH HOH . G 6 HOH A 81 1181 1186 HOH HOH . G 6 HOH A 82 1182 1187 HOH HOH . G 6 HOH A 83 1183 1188 HOH HOH . G 6 HOH A 84 1184 1189 HOH HOH . G 6 HOH A 85 1185 1190 HOH HOH . G 6 HOH A 86 1186 1191 HOH HOH . G 6 HOH A 87 1187 1192 HOH HOH . G 6 HOH A 88 1188 1193 HOH HOH . G 6 HOH A 89 1189 1194 HOH HOH . G 6 HOH A 90 1190 1195 HOH HOH . G 6 HOH A 91 1191 1196 HOH HOH . G 6 HOH A 92 1192 1197 HOH HOH . G 6 HOH A 93 1193 1198 HOH HOH . G 6 HOH A 94 1194 1199 HOH HOH . G 6 HOH A 95 1195 1200 HOH HOH . G 6 HOH A 96 1196 1201 HOH HOH . G 6 HOH A 97 1197 1202 HOH HOH . G 6 HOH A 98 1198 1203 HOH HOH . G 6 HOH A 99 1199 1204 HOH HOH . G 6 HOH A 100 1200 1205 HOH HOH . G 6 HOH A 101 1201 1206 HOH HOH . G 6 HOH A 102 1202 1207 HOH HOH . G 6 HOH A 103 1203 1208 HOH HOH . G 6 HOH A 104 1204 1209 HOH HOH . G 6 HOH A 105 1205 1210 HOH HOH . G 6 HOH A 106 1206 1211 HOH HOH . G 6 HOH A 107 1207 1212 HOH HOH . G 6 HOH A 108 1208 1213 HOH HOH . G 6 HOH A 109 1209 1214 HOH HOH . G 6 HOH A 110 1210 1215 HOH HOH . G 6 HOH A 111 1211 1216 HOH HOH . G 6 HOH A 112 1212 1217 HOH HOH . G 6 HOH A 113 1213 1218 HOH HOH . G 6 HOH A 114 1214 1219 HOH HOH . G 6 HOH A 115 1215 1220 HOH HOH . G 6 HOH A 116 1216 1221 HOH HOH . G 6 HOH A 117 1217 1222 HOH HOH . G 6 HOH A 118 1218 1223 HOH HOH . G 6 HOH A 119 1219 1224 HOH HOH . G 6 HOH A 120 1220 1225 HOH HOH . G 6 HOH A 121 1221 1226 HOH HOH . G 6 HOH A 122 1222 1227 HOH HOH . G 6 HOH A 123 1223 1228 HOH HOH . G 6 HOH A 124 1224 1229 HOH HOH . G 6 HOH A 125 1225 1230 HOH HOH . G 6 HOH A 126 1226 1231 HOH HOH . G 6 HOH A 127 1227 1232 HOH HOH . G 6 HOH A 128 1228 1233 HOH HOH . G 6 HOH A 129 1229 1234 HOH HOH . G 6 HOH A 130 1230 1235 HOH HOH . G 6 HOH A 131 1231 1236 HOH HOH . G 6 HOH A 132 1232 1237 HOH HOH . G 6 HOH A 133 1233 1238 HOH HOH . G 6 HOH A 134 1234 1239 HOH HOH . G 6 HOH A 135 1235 1240 HOH HOH . G 6 HOH A 136 1236 1241 HOH HOH . G 6 HOH A 137 1237 1242 HOH HOH . G 6 HOH A 138 1238 1243 HOH HOH . G 6 HOH A 139 1239 1244 HOH HOH . G 6 HOH A 140 1240 1245 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 18.489 _atom_site.Cartn_y -24.537 _atom_site.Cartn_z -23.245 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 38.79 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 203 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #