data_4GWJ # _model_server_result.job_id qROibCFHzcltYULywi5mlA _model_server_result.datetime_utc '2024-11-30 20:24:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gwj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 4GWJ # _exptl.entry_id 4GWJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4GWJ _cell.length_a 66.923 _cell.length_b 66.923 _cell.length_c 99.387 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GWJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 GAL NAG C1 O1 . O3 HO3 . sing 2 ? 2 3 2 FUC GAL C1 O1 . O2 HO2 . sing 3 ? 2 4 1 FUC NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG B 1003 NAG 2 n B GAL 2 B 2 GAL B 1002 GAL 2 n B FUC 3 B 3 FUC B 1001 FUC 2 n B FUC 4 B 4 FUC B 1004 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3 NAG . B NAG 1 1_555 B C1 GAL . B GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.379 ? covale ? covale2 B O4 NAG . B NAG 1 1_555 B C1 FUC . B FUC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.379 ? covale ? covale3 B O2 GAL . B GAL 2 1_555 B C1 FUC . B FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? metalc ? metalc1 A O ARG 31 A ARG 68 1_555 F CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc2 A OD1 ASP 34 A ASP 71 1_555 F CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc3 A O ASN 36 A ASN 73 1_555 F CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc4 A OG SER 45 A SER 82 1_555 F CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc5 A O SER 45 A SER 82 1_555 F CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.566 ? metalc ? metalc6 A OD2 ASP 60 A ASP 97 1_555 E MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc7 A O ALA 139 A ALA 176 1_555 F CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc8 A OE1 GLU 140 A GLU 177 1_555 F CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? metalc ? metalc9 C MG MG . A MG 201 1_555 G O HOH . A HOH 399 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.905 ? metalc ? metalc10 C MG MG . A MG 201 1_555 G O HOH . A HOH 434 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc11 C MG MG . A MG 201 1_555 G O HOH . A HOH 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc12 C MG MG . A MG 201 1_555 G O HOH . A HOH 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? metalc ? metalc13 C MG MG . A MG 201 1_555 G O HOH . A HOH 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc14 D MG MG . A MG 202 1_555 G O HOH . A HOH 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc15 D MG MG . A MG 202 1_555 G O HOH . A HOH 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc16 D MG MG . A MG 202 1_555 G O HOH . A HOH 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc17 D MG MG . A MG 202 1_555 G O HOH . A HOH 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc18 D MG MG . A MG 202 1_555 G O HOH . A HOH 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc19 E MG MG . A MG 203 1_555 G O HOH . A HOH 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc20 E MG MG . A MG 203 1_555 G O HOH . A HOH 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc21 E MG MG . A MG 203 1_555 G O HOH . A HOH 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc22 E MG MG . A MG 203 1_555 G O HOH . A HOH 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.855 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4GWJ _atom_sites.fract_transf_matrix[1][1] 0.014943 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014943 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010062 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 201 202 MG MG . D 3 MG A 1 202 203 MG MG . E 3 MG A 1 203 204 MG MG . F 4 CA A 1 204 205 CA CA . G 5 HOH A 1 301 301 HOH HOH . G 5 HOH A 2 302 302 HOH HOH . G 5 HOH A 3 303 303 HOH HOH . G 5 HOH A 4 304 304 HOH HOH . G 5 HOH A 5 305 305 HOH HOH . G 5 HOH A 6 306 306 HOH HOH . G 5 HOH A 7 307 307 HOH HOH . G 5 HOH A 8 308 308 HOH HOH . G 5 HOH A 9 309 309 HOH HOH . G 5 HOH A 10 310 310 HOH HOH . G 5 HOH A 11 311 311 HOH HOH . G 5 HOH A 12 312 312 HOH HOH . G 5 HOH A 13 313 313 HOH HOH . G 5 HOH A 14 314 314 HOH HOH . G 5 HOH A 15 315 315 HOH HOH . G 5 HOH A 16 316 316 HOH HOH . G 5 HOH A 17 317 317 HOH HOH . G 5 HOH A 18 318 318 HOH HOH . G 5 HOH A 19 319 319 HOH HOH . G 5 HOH A 20 320 320 HOH HOH . G 5 HOH A 21 321 321 HOH HOH . G 5 HOH A 22 322 322 HOH HOH . G 5 HOH A 23 323 323 HOH HOH . G 5 HOH A 24 324 324 HOH HOH . G 5 HOH A 25 325 325 HOH HOH . G 5 HOH A 26 326 326 HOH HOH . G 5 HOH A 27 327 327 HOH HOH . G 5 HOH A 28 328 328 HOH HOH . G 5 HOH A 29 329 329 HOH HOH . G 5 HOH A 30 330 330 HOH HOH . G 5 HOH A 31 331 331 HOH HOH . G 5 HOH A 32 332 332 HOH HOH . G 5 HOH A 33 333 333 HOH HOH . G 5 HOH A 34 334 334 HOH HOH . G 5 HOH A 35 335 335 HOH HOH . G 5 HOH A 36 336 336 HOH HOH . G 5 HOH A 37 337 337 HOH HOH . G 5 HOH A 38 338 338 HOH HOH . G 5 HOH A 39 339 339 HOH HOH . G 5 HOH A 40 340 340 HOH HOH . G 5 HOH A 41 341 341 HOH HOH . G 5 HOH A 42 342 342 HOH HOH . G 5 HOH A 43 343 343 HOH HOH . G 5 HOH A 44 344 344 HOH HOH . G 5 HOH A 45 345 345 HOH HOH . G 5 HOH A 46 346 346 HOH HOH . G 5 HOH A 47 347 347 HOH HOH . G 5 HOH A 48 348 348 HOH HOH . G 5 HOH A 49 349 349 HOH HOH . G 5 HOH A 50 350 350 HOH HOH . G 5 HOH A 51 351 351 HOH HOH . G 5 HOH A 52 352 352 HOH HOH . G 5 HOH A 53 353 353 HOH HOH . G 5 HOH A 54 354 354 HOH HOH . G 5 HOH A 55 355 355 HOH HOH . G 5 HOH A 56 356 356 HOH HOH . G 5 HOH A 57 357 357 HOH HOH . G 5 HOH A 58 358 358 HOH HOH . G 5 HOH A 59 359 359 HOH HOH . G 5 HOH A 60 360 360 HOH HOH . G 5 HOH A 61 361 361 HOH HOH . G 5 HOH A 62 362 362 HOH HOH . G 5 HOH A 63 363 363 HOH HOH . G 5 HOH A 64 364 364 HOH HOH . G 5 HOH A 65 365 365 HOH HOH . G 5 HOH A 66 366 366 HOH HOH . G 5 HOH A 67 367 367 HOH HOH . G 5 HOH A 68 368 368 HOH HOH . G 5 HOH A 69 369 369 HOH HOH . G 5 HOH A 70 370 370 HOH HOH . G 5 HOH A 71 371 371 HOH HOH . G 5 HOH A 72 372 372 HOH HOH . G 5 HOH A 73 373 373 HOH HOH . G 5 HOH A 74 374 374 HOH HOH . G 5 HOH A 75 375 375 HOH HOH . G 5 HOH A 76 376 376 HOH HOH . G 5 HOH A 77 377 377 HOH HOH . G 5 HOH A 78 378 378 HOH HOH . G 5 HOH A 79 379 379 HOH HOH . G 5 HOH A 80 380 380 HOH HOH . G 5 HOH A 81 381 381 HOH HOH . G 5 HOH A 82 382 382 HOH HOH . G 5 HOH A 83 383 383 HOH HOH . G 5 HOH A 84 384 384 HOH HOH . G 5 HOH A 85 385 385 HOH HOH . G 5 HOH A 86 386 386 HOH HOH . G 5 HOH A 87 387 387 HOH HOH . G 5 HOH A 88 388 388 HOH HOH . G 5 HOH A 89 389 389 HOH HOH . G 5 HOH A 90 390 390 HOH HOH . G 5 HOH A 91 391 391 HOH HOH . G 5 HOH A 92 392 392 HOH HOH . G 5 HOH A 93 393 393 HOH HOH . G 5 HOH A 94 394 394 HOH HOH . G 5 HOH A 95 395 395 HOH HOH . G 5 HOH A 96 396 396 HOH HOH . G 5 HOH A 97 397 397 HOH HOH . G 5 HOH A 98 398 399 HOH HOH . G 5 HOH A 99 399 400 HOH HOH . G 5 HOH A 100 400 401 HOH HOH . G 5 HOH A 101 401 402 HOH HOH . G 5 HOH A 102 402 403 HOH HOH . G 5 HOH A 103 403 404 HOH HOH . G 5 HOH A 104 404 405 HOH HOH . G 5 HOH A 105 405 406 HOH HOH . G 5 HOH A 106 406 407 HOH HOH . G 5 HOH A 107 407 408 HOH HOH . G 5 HOH A 108 408 409 HOH HOH . G 5 HOH A 109 409 410 HOH HOH . G 5 HOH A 110 410 411 HOH HOH . G 5 HOH A 111 411 412 HOH HOH . G 5 HOH A 112 412 413 HOH HOH . G 5 HOH A 113 413 414 HOH HOH . G 5 HOH A 114 414 415 HOH HOH . G 5 HOH A 115 415 416 HOH HOH . G 5 HOH A 116 416 417 HOH HOH . G 5 HOH A 117 417 418 HOH HOH . G 5 HOH A 118 418 419 HOH HOH . G 5 HOH A 119 419 420 HOH HOH . G 5 HOH A 120 420 421 HOH HOH . G 5 HOH A 121 421 422 HOH HOH . G 5 HOH A 122 422 423 HOH HOH . G 5 HOH A 123 423 424 HOH HOH . G 5 HOH A 124 424 425 HOH HOH . G 5 HOH A 125 425 426 HOH HOH . G 5 HOH A 126 426 427 HOH HOH . G 5 HOH A 127 427 428 HOH HOH . G 5 HOH A 128 428 429 HOH HOH . G 5 HOH A 129 429 430 HOH HOH . G 5 HOH A 130 430 431 HOH HOH . G 5 HOH A 131 431 432 HOH HOH . G 5 HOH A 132 432 433 HOH HOH . G 5 HOH A 133 433 434 HOH HOH . G 5 HOH A 134 434 435 HOH HOH . G 5 HOH A 135 435 436 HOH HOH . G 5 HOH A 136 436 437 HOH HOH . G 5 HOH A 137 437 438 HOH HOH . G 5 HOH A 138 438 439 HOH HOH . G 5 HOH A 139 439 440 HOH HOH . G 5 HOH A 140 440 441 HOH HOH . G 5 HOH A 141 441 442 HOH HOH . G 5 HOH A 142 442 443 HOH HOH . G 5 HOH A 143 443 444 HOH HOH . G 5 HOH A 144 444 445 HOH HOH . G 5 HOH A 145 445 446 HOH HOH . G 5 HOH A 146 446 447 HOH HOH . G 5 HOH A 147 447 448 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 4.436 _atom_site.Cartn_y 4.108 _atom_site.Cartn_z -14.837 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 28.24 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 202 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 1 #