data_4GWU # _model_server_result.job_id 1Jao7qzWKx8FoKuRzJT1lw _model_server_result.datetime_utc '2024-11-26 14:51:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gwu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4GWU # _exptl.entry_id 4GWU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 340.116 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2,6-di-O-phosphono-beta-D-fructofuranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4GWU _cell.length_a 53.999 _cell.length_b 81.221 _cell.length_c 165.058 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GWU _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 53.999 81.221 0 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 53.999 0 0 4 'crystal symmetry operation' 4_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 81.221 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 97 A GLU 97 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.976 ? metalc ? metalc2 A OD2 ASP 118 A ASP 118 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc3 A OD1 ASP 118 A ASP 118 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.886 ? metalc ? metalc4 A OD1 ASP 121 A ASP 121 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc5 A OE1 GLU 280 A GLU 280 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc6 B O1 FDP . A FDP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? # _chem_comp.formula 'C6 H14 O12 P2' _chem_comp.formula_weight 340.116 _chem_comp.id FDP _chem_comp.mon_nstd_flag n _chem_comp.name 2,6-di-O-phosphono-beta-D-fructofuranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms FRUCTOSE-2,6-DIPHOSPHATE;2,6-di-O-phosphono-beta-D-fructose;2,6-di-O-phosphono-D-fructose;2,6-di-O-phosphono-fructose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1P FDP doub 83 n n P1 O2P FDP sing 84 n n P1 O3P FDP sing 85 n n P1 O2 FDP sing 86 n n O2P HOP2 FDP sing 87 n n O3P HOP3 FDP sing 88 n n O1 C1 FDP sing 89 n n O1 HO1 FDP sing 90 n n C1 C2 FDP sing 91 n n C1 H11 FDP sing 92 n n C1 H12 FDP sing 93 n n C2 O2 FDP sing 94 n n C2 C3 FDP sing 95 n n C2 O5 FDP sing 96 n n C3 O3 FDP sing 97 n n C3 C4 FDP sing 98 n n C3 H3 FDP sing 99 n n O3 HO3 FDP sing 100 n n C4 O4 FDP sing 101 n n C4 C5 FDP sing 102 n n C4 H4 FDP sing 103 n n O4 HO4 FDP sing 104 n n C5 O5 FDP sing 105 n n C5 C6 FDP sing 106 n n C5 H5 FDP sing 107 n n C6 O6 FDP sing 108 n n C6 H61 FDP sing 109 n n C6 H62 FDP sing 110 n n O6 P2 FDP sing 111 n n P2 O4P FDP doub 112 n n P2 O5P FDP sing 113 n n P2 O6P FDP sing 114 n n O5P HOP5 FDP sing 115 n n O6P HOP6 FDP sing 116 n n # _pdbx_chem_comp_identifier.comp_id FDP _pdbx_chem_comp_identifier.identifier b-D-Fruf2PO36PO3 _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 4GWU _atom_sites.fract_transf_matrix[1][1] 0.018519 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012312 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006058 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FDP A 1 401 339 FDP FDP . C 3 MG A 1 402 341 MG MG . D 4 HOH A 1 501 501 HOH HOH . D 4 HOH A 2 502 502 HOH HOH . D 4 HOH A 3 503 503 HOH HOH . D 4 HOH A 4 504 504 HOH HOH . D 4 HOH A 5 505 505 HOH HOH . D 4 HOH A 6 506 506 HOH HOH . D 4 HOH A 7 507 507 HOH HOH . D 4 HOH A 8 508 509 HOH HOH . D 4 HOH A 9 509 510 HOH HOH . D 4 HOH A 10 510 511 HOH HOH . D 4 HOH A 11 511 512 HOH HOH . D 4 HOH A 12 512 513 HOH HOH . D 4 HOH A 13 513 515 HOH HOH . D 4 HOH A 14 514 518 HOH HOH . D 4 HOH A 15 515 519 HOH HOH . D 4 HOH A 16 516 520 HOH HOH . D 4 HOH A 17 517 521 HOH HOH . D 4 HOH A 18 518 524 HOH HOH . D 4 HOH A 19 519 525 HOH HOH . D 4 HOH A 20 520 526 HOH HOH . D 4 HOH A 21 521 527 HOH HOH . D 4 HOH A 22 522 529 HOH HOH . D 4 HOH A 23 523 530 HOH HOH . D 4 HOH A 24 524 531 HOH HOH . D 4 HOH A 25 525 532 HOH HOH . D 4 HOH A 26 526 533 HOH HOH . D 4 HOH A 27 527 534 HOH HOH . D 4 HOH A 28 528 535 HOH HOH . D 4 HOH A 29 529 536 HOH HOH . D 4 HOH A 30 530 538 HOH HOH . D 4 HOH A 31 531 539 HOH HOH . D 4 HOH A 32 532 540 HOH HOH . D 4 HOH A 33 533 541 HOH HOH . D 4 HOH A 34 534 542 HOH HOH . D 4 HOH A 35 535 543 HOH HOH . D 4 HOH A 36 536 544 HOH HOH . D 4 HOH A 37 537 545 HOH HOH . D 4 HOH A 38 538 546 HOH HOH . D 4 HOH A 39 539 547 HOH HOH . D 4 HOH A 40 540 548 HOH HOH . D 4 HOH A 41 541 549 HOH HOH . D 4 HOH A 42 542 551 HOH HOH . D 4 HOH A 43 543 555 HOH HOH . D 4 HOH A 44 544 557 HOH HOH . D 4 HOH A 45 545 559 HOH HOH . D 4 HOH A 46 546 562 HOH HOH . D 4 HOH A 47 547 565 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 FDP . . . B 2 16.377 33.686 25.954 1 50.69 ? P1 FDP 401 A 1 HETATM 2 O O1P FDP . . . B 2 15.731 33.078 24.698 1 48.85 ? O1P FDP 401 A 1 HETATM 3 O O2P FDP . . . B 2 15.885 33.208 27.294 1 49.17 ? O2P FDP 401 A 1 HETATM 4 O O3P FDP . . . B 2 16.496 35.215 25.825 1 51.1 ? O3P FDP 401 A 1 HETATM 5 O O1 FDP . . . B 2 16.716 30.721 25.624 1 49.23 ? O1 FDP 401 A 1 HETATM 6 C C1 FDP . . . B 2 17.845 30.625 26.474 1 46.9 ? C1 FDP 401 A 1 HETATM 7 C C2 FDP . . . B 2 18.375 32.006 26.819 1 47.17 ? C2 FDP 401 A 1 HETATM 8 O O2 FDP . . . B 2 17.895 33.08 26.018 1 48.88 ? O2 FDP 401 A 1 HETATM 9 C C3 FDP . . . B 2 19.897 31.966 26.653 1 48.24 ? C3 FDP 401 A 1 HETATM 10 O O3 FDP . . . B 2 20.36 32.468 25.379 1 48.94 ? O3 FDP 401 A 1 HETATM 11 C C4 FDP . . . B 2 20.442 32.746 27.834 1 47.65 ? C4 FDP 401 A 1 HETATM 12 O O4 FDP . . . B 2 21.653 32.125 28.309 1 45.42 ? O4 FDP 401 A 1 HETATM 13 C C5 FDP . . . B 2 19.295 32.683 28.857 1 47.85 ? C5 FDP 401 A 1 HETATM 14 O O5 FDP . . . B 2 18.076 32.311 28.172 1 46.75 ? O5 FDP 401 A 1 HETATM 15 C C6 FDP . . . B 2 19.112 34.031 29.552 1 47.04 ? C6 FDP 401 A 1 HETATM 16 O O6 FDP . . . B 2 18.291 33.927 30.717 1 46.28 ? O6 FDP 401 A 1 HETATM 17 P P2 FDP . . . B 2 18.195 35.214 31.7 1 48.21 ? P2 FDP 401 A 1 HETATM 18 O O4P FDP . . . B 2 17.784 34.667 33.08 1 47.11 ? O4P FDP 401 A 1 HETATM 19 O O5P FDP . . . B 2 17.185 36.152 31.017 1 45.12 ? O5P FDP 401 A 1 HETATM 20 O O6P FDP . . . B 2 19.629 35.742 31.71 1 47.96 ? O6P FDP 401 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #