data_4GWX
#
_model_server_result.job_id            q8zV47PQgjLbUBm8_dpvxQ 
_model_server_result.datetime_utc      '2024-10-19 17:37:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4gwx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    4GWX 
#
_exptl.entry_id    4GWX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              260.136 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            6-O-phosphono-beta-D-fructofuranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4GWX 
_cell.length_a            53.971 
_cell.length_b            83.272 
_cell.length_c            165.772 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4GWX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -83.272 0 
3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
4 'crystal symmetry operation' 4_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -83.272 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 68 A ASP 68 1_555 G MG MG . A MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? 
metalc ? metalc2 A OE1 GLU 97 A GLU 97 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? 
metalc ? metalc3 A OE2 GLU 97 A GLU 97 1_555 G MG MG . A MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? 
metalc ? metalc4 A OD2 ASP 118 A ASP 118 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? 
metalc ? metalc5 A OD1 ASP 118 A ASP 118 1_555 F MG MG . A MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
metalc ? metalc6 A O LEU 120 A LEU 120 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? 
metalc ? metalc7 A OD1 ASP 121 A ASP 121 1_555 F MG MG . A MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? 
metalc ? metalc8 A OE1 GLU 280 A GLU 280 1_555 F MG MG . A MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
metalc ? metalc9 C O4 PO4 . A PO4 402 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? 
metalc ? metalc10 C O2 PO4 . A PO4 402 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? 
metalc ? metalc11 C O2 PO4 . A PO4 402 1_555 F MG MG . A MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.942 ? 
metalc ? metalc12 C O3 PO4 . A PO4 402 1_555 G MG MG . A MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? 
metalc ? metalc13 C O4 PO4 . A PO4 402 1_555 G MG MG . A MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? 
metalc ? metalc14 E MG MG . A MG 404 1_555 H O HOH . A HOH 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.917 ? 
metalc ? metalc15 G MG MG . A MG 406 1_555 H O HOH . A HOH 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? 
#
_chem_comp.formula           'C6 H13 O9 P' 
_chem_comp.formula_weight    260.136 
_chem_comp.id                F6P 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              6-O-phosphono-beta-D-fructofuranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     FRUCTOSE-6-PHOSPHATE;6-O-phosphono-beta-D-fructose;6-O-phosphono-D-fructose;6-O-phosphono-fructose 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C1 F6P sing 83 n n 
O1 HO1 F6P sing 84 n n 
C1 C2 F6P sing 85 n n 
C1 H11 F6P sing 86 n n 
C1 H12 F6P sing 87 n n 
C2 O2 F6P sing 88 n n 
C2 C3 F6P sing 89 n n 
C2 O5 F6P sing 90 n n 
O2 HO2 F6P sing 91 n n 
C3 O3 F6P sing 92 n n 
C3 C4 F6P sing 93 n n 
C3 H3 F6P sing 94 n n 
O3 HO3 F6P sing 95 n n 
C4 O4 F6P sing 96 n n 
C4 C5 F6P sing 97 n n 
C4 H4 F6P sing 98 n n 
O4 HO4 F6P sing 99 n n 
C5 O5 F6P sing 100 n n 
C5 C6 F6P sing 101 n n 
C5 H5 F6P sing 102 n n 
C6 O6 F6P sing 103 n n 
C6 H61 F6P sing 104 n n 
C6 H62 F6P sing 105 n n 
O6 P F6P sing 106 n n 
P O1P F6P doub 107 n n 
P O2P F6P sing 108 n n 
P O3P F6P sing 109 n n 
O2P HOP2 F6P sing 110 n n 
O3P HOP3 F6P sing 111 n n 
#
_pdbx_chem_comp_identifier.comp_id            F6P 
_pdbx_chem_comp_identifier.identifier         b-D-Fruf6PO3 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     4GWX 
_atom_sites.fract_transf_matrix[1][1]    0.018528 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012009 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006032 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 F6P A 1 401 339 F6P F6P . 
C 3 PO4 A 1 402 340 PO4 PO4 . 
D 3 PO4 A 1 403 341 PO4 PO4 . 
E 4 MG A 1 404 342 MG MG . 
F 4 MG A 1 405 343 MG MG . 
G 4 MG A 1 406 344 MG MG . 
H 5 HOH A 1 501 501 HOH HOH . 
H 5 HOH A 2 502 502 HOH HOH . 
H 5 HOH A 3 503 503 HOH HOH . 
H 5 HOH A 4 504 504 HOH HOH . 
H 5 HOH A 5 505 505 HOH HOH . 
H 5 HOH A 6 506 506 HOH HOH . 
H 5 HOH A 7 507 507 HOH HOH . 
H 5 HOH A 8 508 508 HOH HOH . 
H 5 HOH A 9 509 509 HOH HOH . 
H 5 HOH A 10 510 511 HOH HOH . 
H 5 HOH A 11 511 512 HOH HOH . 
H 5 HOH A 12 512 513 HOH HOH . 
H 5 HOH A 13 513 515 HOH HOH . 
H 5 HOH A 14 514 516 HOH HOH . 
H 5 HOH A 15 515 517 HOH HOH . 
H 5 HOH A 16 516 518 HOH HOH . 
H 5 HOH A 17 517 519 HOH HOH . 
H 5 HOH A 18 518 521 HOH HOH . 
H 5 HOH A 19 519 522 HOH HOH . 
H 5 HOH A 20 520 523 HOH HOH . 
H 5 HOH A 21 521 524 HOH HOH . 
H 5 HOH A 22 522 525 HOH HOH . 
H 5 HOH A 23 523 526 HOH HOH . 
H 5 HOH A 24 524 527 HOH HOH . 
H 5 HOH A 25 525 528 HOH HOH . 
H 5 HOH A 26 526 529 HOH HOH . 
H 5 HOH A 27 527 530 HOH HOH . 
H 5 HOH A 28 528 531 HOH HOH . 
H 5 HOH A 29 529 533 HOH HOH . 
H 5 HOH A 30 530 534 HOH HOH . 
H 5 HOH A 31 531 536 HOH HOH . 
H 5 HOH A 32 532 537 HOH HOH . 
H 5 HOH A 33 533 538 HOH HOH . 
H 5 HOH A 34 534 540 HOH HOH . 
H 5 HOH A 35 535 541 HOH HOH . 
H 5 HOH A 36 536 542 HOH HOH . 
H 5 HOH A 37 537 543 HOH HOH . 
H 5 HOH A 38 538 544 HOH HOH . 
H 5 HOH A 39 539 545 HOH HOH . 
H 5 HOH A 40 540 546 HOH HOH . 
H 5 HOH A 41 541 547 HOH HOH . 
H 5 HOH A 42 542 548 HOH HOH . 
H 5 HOH A 43 543 549 HOH HOH . 
H 5 HOH A 44 544 550 HOH HOH . 
H 5 HOH A 45 545 551 HOH HOH . 
H 5 HOH A 46 546 554 HOH HOH . 
H 5 HOH A 47 547 555 HOH HOH . 
H 5 HOH A 48 548 556 HOH HOH . 
H 5 HOH A 49 549 557 HOH HOH . 
H 5 HOH A 50 550 558 HOH HOH . 
H 5 HOH A 51 551 559 HOH HOH . 
H 5 HOH A 52 552 560 HOH HOH . 
H 5 HOH A 53 553 561 HOH HOH . 
H 5 HOH A 54 554 562 HOH HOH . 
H 5 HOH A 55 555 563 HOH HOH . 
H 5 HOH A 56 556 565 HOH HOH . 
H 5 HOH A 57 557 566 HOH HOH . 
H 5 HOH A 58 558 567 HOH HOH . 
H 5 HOH A 59 559 568 HOH HOH . 
H 5 HOH A 60 560 569 HOH HOH . 
H 5 HOH A 61 561 570 HOH HOH . 
H 5 HOH A 62 562 571 HOH HOH . 
H 5 HOH A 63 563 572 HOH HOH . 
H 5 HOH A 64 564 573 HOH HOH . 
H 5 HOH A 65 565 574 HOH HOH . 
H 5 HOH A 66 566 575 HOH HOH . 
H 5 HOH A 67 567 576 HOH HOH . 
H 5 HOH A 68 568 577 HOH HOH . 
H 5 HOH A 69 569 578 HOH HOH . 
H 5 HOH A 70 570 579 HOH HOH . 
H 5 HOH A 71 571 580 HOH HOH . 
H 5 HOH A 72 572 581 HOH HOH . 
H 5 HOH A 73 573 582 HOH HOH . 
H 5 HOH A 74 574 583 HOH HOH . 
H 5 HOH A 75 575 584 HOH HOH . 
H 5 HOH A 76 576 585 HOH HOH . 
H 5 HOH A 77 577 586 HOH HOH . 
H 5 HOH A 78 578 587 HOH HOH . 
H 5 HOH A 79 579 588 HOH HOH . 
H 5 HOH A 80 580 589 HOH HOH . 
H 5 HOH A 81 581 590 HOH HOH . 
H 5 HOH A 82 582 591 HOH HOH . 
H 5 HOH A 83 583 592 HOH HOH . 
H 5 HOH A 84 584 593 HOH HOH . 
H 5 HOH A 85 585 594 HOH HOH . 
H 5 HOH A 86 586 595 HOH HOH . 
H 5 HOH A 87 587 596 HOH HOH . 
H 5 HOH A 88 588 597 HOH HOH . 
H 5 HOH A 89 589 598 HOH HOH . 
H 5 HOH A 90 590 599 HOH HOH . 
H 5 HOH A 91 591 600 HOH HOH . 
H 5 HOH A 92 592 601 HOH HOH . 
H 5 HOH A 93 593 602 HOH HOH . 
H 5 HOH A 94 594 603 HOH HOH . 
H 5 HOH A 95 595 604 HOH HOH . 
H 5 HOH A 96 596 605 HOH HOH . 
H 5 HOH A 97 597 606 HOH HOH . 
H 5 HOH A 98 598 607 HOH HOH . 
H 5 HOH A 99 599 608 HOH HOH . 
H 5 HOH A 100 600 609 HOH HOH . 
H 5 HOH A 101 601 610 HOH HOH . 
H 5 HOH A 102 602 611 HOH HOH . 
H 5 HOH A 103 603 613 HOH HOH . 
H 5 HOH A 104 604 614 HOH HOH . 
H 5 HOH A 105 605 615 HOH HOH . 
H 5 HOH A 106 606 616 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 F6P . . . B 2 -11.228 -32.758 -27.074 1 33.19 ? O1 F6P 401 A 1 
HETATM 2 C C1 F6P . . . B 2 -9.909 -32.467 -26.675 1 25.43 ? C1 F6P 401 A 1 
HETATM 3 C C2 F6P . . . B 2 -9.043 -33.635 -27.118 1 19.9 ? C2 F6P 401 A 1 
HETATM 4 O O2 F6P . . . B 2 -9.489 -34.731 -26.343 1 16.83 ? O2 F6P 401 A 1 
HETATM 5 C C3 F6P . . . B 2 -7.589 -33.258 -26.96 1 16.85 ? C3 F6P 401 A 1 
HETATM 6 O O3 F6P . . . B 2 -7.121 -33.525 -25.667 1 14.73 ? O3 F6P 401 A 1 
HETATM 7 C C4 F6P . . . B 2 -6.894 -34.078 -28.037 1 18.42 ? C4 F6P 401 A 1 
HETATM 8 O O4 F6P . . . B 2 -5.83 -33.357 -28.609 1 18.16 ? O4 F6P 401 A 1 
HETATM 9 C C5 F6P . . . B 2 -7.962 -34.164 -29.103 1 18.61 ? C5 F6P 401 A 1 
HETATM 10 O O5 F6P . . . B 2 -9.214 -34.058 -28.456 1 19.68 ? O5 F6P 401 A 1 
HETATM 11 C C6 F6P . . . B 2 -7.849 -35.457 -29.873 1 17.15 ? C6 F6P 401 A 1 
HETATM 12 O O6 F6P . . . B 2 -8.987 -35.483 -30.722 1 22.73 ? O6 F6P 401 A 1 
HETATM 13 P P F6P . . . B 2 -9.081 -36.521 -31.967 1 19.03 ? P F6P 401 A 1 
HETATM 14 O O1P F6P . . . B 2 -9.945 -35.906 -33.074 1 22.91 ? O1P F6P 401 A 1 
HETATM 15 O O2P F6P . . . B 2 -9.587 -37.782 -31.35 1 19.21 ? O2P F6P 401 A 1 
HETATM 16 O O3P F6P . . . B 2 -7.652 -36.779 -32.507 1 22.71 ? O3P F6P 401 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           16 
#