data_4GWY # _model_server_result.job_id UqkQLvplw1WLrlL87Cn5pQ _model_server_result.datetime_utc '2024-10-20 19:36:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gwy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4GWY # _exptl.entry_id 4GWY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 260.136 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 6-O-phosphono-beta-D-fructofuranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4GWY _cell.length_a 53.261 _cell.length_b 82.571 _cell.length_c 168.885 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GWY _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 68 A ASP 68 1_555 F MG MG . A MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc2 A OE1 GLU 97 A GLU 97 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc3 A OE2 GLU 97 A GLU 97 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? metalc ? metalc4 A OE1 GLU 97 A GLU 97 1_555 F MG MG . A MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc5 A OD2 ASP 118 A ASP 118 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc6 A OD1 ASP 118 A ASP 118 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc7 A O LEU 120 A LEU 120 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc8 A OD1 ASP 121 A ASP 121 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.987 ? metalc ? metalc9 A OE1 GLU 280 A GLU 280 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc10 C O2 PO4 . A PO4 402 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.893 ? metalc ? metalc11 C O2 PO4 . A PO4 402 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? metalc ? metalc12 C O3 PO4 . A PO4 402 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.86 ? metalc ? metalc13 C O4 PO4 . A PO4 402 1_555 F MG MG . A MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? # _chem_comp.formula 'C6 H13 O9 P' _chem_comp.formula_weight 260.136 _chem_comp.id F6P _chem_comp.mon_nstd_flag n _chem_comp.name 6-O-phosphono-beta-D-fructofuranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms FRUCTOSE-6-PHOSPHATE;6-O-phosphono-beta-D-fructose;6-O-phosphono-D-fructose;6-O-phosphono-fructose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 F6P sing 122 n n O1 HO1 F6P sing 123 n n C1 C2 F6P sing 124 n n C1 H11 F6P sing 125 n n C1 H12 F6P sing 126 n n C2 O2 F6P sing 127 n n C2 C3 F6P sing 128 n n C2 O5 F6P sing 129 n n O2 HO2 F6P sing 130 n n C3 O3 F6P sing 131 n n C3 C4 F6P sing 132 n n C3 H3 F6P sing 133 n n O3 HO3 F6P sing 134 n n C4 O4 F6P sing 135 n n C4 C5 F6P sing 136 n n C4 H4 F6P sing 137 n n O4 HO4 F6P sing 138 n n C5 O5 F6P sing 139 n n C5 C6 F6P sing 140 n n C5 H5 F6P sing 141 n n C6 O6 F6P sing 142 n n C6 H61 F6P sing 143 n n C6 H62 F6P sing 144 n n O6 P F6P sing 145 n n P O1P F6P doub 146 n n P O2P F6P sing 147 n n P O3P F6P sing 148 n n O2P HOP2 F6P sing 149 n n O3P HOP3 F6P sing 150 n n # _pdbx_chem_comp_identifier.comp_id F6P _pdbx_chem_comp_identifier.identifier b-D-Fruf6PO3 _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 4GWY _atom_sites.fract_transf_matrix[1][1] 0.018775 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012111 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005921 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 F6P A 1 401 339 F6P F6P . C 3 PO4 A 1 402 434 PO4 PO4 . D 4 MG A 1 403 340 MG MG . E 4 MG A 1 404 341 MG MG . F 4 MG A 1 405 342 MG MG . G 5 AMP A 1 406 435 AMP AMP . H 6 HOH A 1 501 501 HOH HOH . H 6 HOH A 2 502 503 HOH HOH . H 6 HOH A 3 503 504 HOH HOH . H 6 HOH A 4 504 505 HOH HOH . H 6 HOH A 5 505 506 HOH HOH . H 6 HOH A 6 506 507 HOH HOH . H 6 HOH A 7 507 508 HOH HOH . H 6 HOH A 8 508 509 HOH HOH . H 6 HOH A 9 509 510 HOH HOH . H 6 HOH A 10 510 511 HOH HOH . H 6 HOH A 11 511 512 HOH HOH . H 6 HOH A 12 512 513 HOH HOH . H 6 HOH A 13 513 514 HOH HOH . H 6 HOH A 14 514 515 HOH HOH . H 6 HOH A 15 515 516 HOH HOH . H 6 HOH A 16 516 517 HOH HOH . H 6 HOH A 17 517 518 HOH HOH . H 6 HOH A 18 518 519 HOH HOH . H 6 HOH A 19 519 520 HOH HOH . H 6 HOH A 20 520 522 HOH HOH . H 6 HOH A 21 521 524 HOH HOH . H 6 HOH A 22 522 525 HOH HOH . H 6 HOH A 23 523 526 HOH HOH . H 6 HOH A 24 524 527 HOH HOH . H 6 HOH A 25 525 529 HOH HOH . H 6 HOH A 26 526 530 HOH HOH . H 6 HOH A 27 527 531 HOH HOH . H 6 HOH A 28 528 533 HOH HOH . H 6 HOH A 29 529 534 HOH HOH . H 6 HOH A 30 530 535 HOH HOH . H 6 HOH A 31 531 537 HOH HOH . H 6 HOH A 32 532 538 HOH HOH . H 6 HOH A 33 533 539 HOH HOH . H 6 HOH A 34 534 540 HOH HOH . H 6 HOH A 35 535 542 HOH HOH . H 6 HOH A 36 536 543 HOH HOH . H 6 HOH A 37 537 544 HOH HOH . H 6 HOH A 38 538 545 HOH HOH . H 6 HOH A 39 539 546 HOH HOH . H 6 HOH A 40 540 547 HOH HOH . H 6 HOH A 41 541 548 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 F6P . . . B 2 10.894 -9.852 -27.196 1 49.11 ? O1 F6P 401 A 1 HETATM 2 C C1 F6P . . . B 2 9.501 -9.816 -26.994 1 43.37 ? C1 F6P 401 A 1 HETATM 3 C C2 F6P . . . B 2 8.971 -8.467 -27.45 1 39.95 ? C2 F6P 401 A 1 HETATM 4 O O2 F6P . . . B 2 9.642 -7.454 -26.672 1 40.07 ? O2 F6P 401 A 1 HETATM 5 C C3 F6P . . . B 2 7.448 -8.518 -27.299 1 39.06 ? C3 F6P 401 A 1 HETATM 6 O O3 F6P . . . B 2 6.962 -8.123 -26.035 1 37.49 ? O3 F6P 401 A 1 HETATM 7 C C4 F6P . . . B 2 6.935 -7.639 -28.419 1 38.53 ? C4 F6P 401 A 1 HETATM 8 O O4 F6P . . . B 2 5.702 -8.117 -28.932 1 38.58 ? O4 F6P 401 A 1 HETATM 9 C C5 F6P . . . B 2 8.052 -7.744 -29.448 1 37.57 ? C5 F6P 401 A 1 HETATM 10 O O5 F6P . . . B 2 9.251 -8.14 -28.801 1 37.23 ? O5 F6P 401 A 1 HETATM 11 C C6 F6P . . . B 2 8.222 -6.446 -30.193 1 36.65 ? C6 F6P 401 A 1 HETATM 12 O O6 F6P . . . B 2 8.983 -6.752 -31.329 1 38.91 ? O6 F6P 401 A 1 HETATM 13 P P F6P . . . B 2 9.206 -5.648 -32.488 1 40.96 ? P F6P 401 A 1 HETATM 14 O O1P F6P . . . B 2 10.312 -6.107 -33.423 1 38.02 ? O1P F6P 401 A 1 HETATM 15 O O2P F6P . . . B 2 9.506 -4.294 -31.867 1 39.48 ? O2P F6P 401 A 1 HETATM 16 O O3P F6P . . . B 2 7.897 -5.518 -33.241 1 42.14 ? O3P F6P 401 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 16 #