data_4GWY # _model_server_result.job_id bKNtog4qkdJMBWbNlxECXA _model_server_result.datetime_utc '2024-10-20 19:49:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gwy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":406}' # _entry.id 4GWY # _exptl.entry_id 4GWY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4GWY _cell.length_a 53.261 _cell.length_b 82.571 _cell.length_c 168.885 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GWY _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 68 A ASP 68 1_555 F MG MG . A MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc2 A OE1 GLU 97 A GLU 97 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc3 A OE2 GLU 97 A GLU 97 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? metalc ? metalc4 A OE1 GLU 97 A GLU 97 1_555 F MG MG . A MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc5 A OD2 ASP 118 A ASP 118 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc6 A OD1 ASP 118 A ASP 118 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc7 A O LEU 120 A LEU 120 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc8 A OD1 ASP 121 A ASP 121 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.987 ? metalc ? metalc9 A OE1 GLU 280 A GLU 280 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc10 C O2 PO4 . A PO4 402 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.893 ? metalc ? metalc11 C O2 PO4 . A PO4 402 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? metalc ? metalc12 C O3 PO4 . A PO4 402 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.86 ? metalc ? metalc13 C O4 PO4 . A PO4 402 1_555 F MG MG . A MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 4GWY _atom_sites.fract_transf_matrix[1][1] 0.018775 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012111 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005921 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 F6P A 1 401 339 F6P F6P . C 3 PO4 A 1 402 434 PO4 PO4 . D 4 MG A 1 403 340 MG MG . E 4 MG A 1 404 341 MG MG . F 4 MG A 1 405 342 MG MG . G 5 AMP A 1 406 435 AMP AMP . H 6 HOH A 1 501 501 HOH HOH . H 6 HOH A 2 502 503 HOH HOH . H 6 HOH A 3 503 504 HOH HOH . H 6 HOH A 4 504 505 HOH HOH . H 6 HOH A 5 505 506 HOH HOH . H 6 HOH A 6 506 507 HOH HOH . H 6 HOH A 7 507 508 HOH HOH . H 6 HOH A 8 508 509 HOH HOH . H 6 HOH A 9 509 510 HOH HOH . H 6 HOH A 10 510 511 HOH HOH . H 6 HOH A 11 511 512 HOH HOH . H 6 HOH A 12 512 513 HOH HOH . H 6 HOH A 13 513 514 HOH HOH . H 6 HOH A 14 514 515 HOH HOH . H 6 HOH A 15 515 516 HOH HOH . H 6 HOH A 16 516 517 HOH HOH . H 6 HOH A 17 517 518 HOH HOH . H 6 HOH A 18 518 519 HOH HOH . H 6 HOH A 19 519 520 HOH HOH . H 6 HOH A 20 520 522 HOH HOH . H 6 HOH A 21 521 524 HOH HOH . H 6 HOH A 22 522 525 HOH HOH . H 6 HOH A 23 523 526 HOH HOH . H 6 HOH A 24 524 527 HOH HOH . H 6 HOH A 25 525 529 HOH HOH . H 6 HOH A 26 526 530 HOH HOH . H 6 HOH A 27 527 531 HOH HOH . H 6 HOH A 28 528 533 HOH HOH . H 6 HOH A 29 529 534 HOH HOH . H 6 HOH A 30 530 535 HOH HOH . H 6 HOH A 31 531 537 HOH HOH . H 6 HOH A 32 532 538 HOH HOH . H 6 HOH A 33 533 539 HOH HOH . H 6 HOH A 34 534 540 HOH HOH . H 6 HOH A 35 535 542 HOH HOH . H 6 HOH A 36 536 543 HOH HOH . H 6 HOH A 37 537 544 HOH HOH . H 6 HOH A 38 538 545 HOH HOH . H 6 HOH A 39 539 546 HOH HOH . H 6 HOH A 40 540 547 HOH HOH . H 6 HOH A 41 541 548 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . G 5 0.48 -33.173 -8.727 1 58.09 ? P AMP 406 A 1 HETATM 2 O O1P AMP . . . G 5 1.137 -31.968 -8.091 1 57.76 ? O1P AMP 406 A 1 HETATM 3 O O2P AMP . . . G 5 1.488 -34.083 -9.379 1 59.11 ? O2P AMP 406 A 1 HETATM 4 O O3P AMP . . . G 5 -0.551 -33.866 -7.864 1 58.21 ? O3P AMP 406 A 1 HETATM 5 O O5' AMP . . . G 5 -0.388 -32.681 -9.99 1 59.63 ? O5' AMP 406 A 1 HETATM 6 C C5' AMP . . . G 5 -0.521 -33.605 -11.076 1 60.76 ? C5' AMP 406 A 1 HETATM 7 C C4' AMP . . . G 5 -1.738 -33.317 -11.952 1 60.75 ? C4' AMP 406 A 1 HETATM 8 O O4' AMP . . . G 5 -2.949 -33.259 -11.189 1 60.73 ? O4' AMP 406 A 1 HETATM 9 C C3' AMP . . . G 5 -1.588 -32.006 -12.7 1 60.34 ? C3' AMP 406 A 1 HETATM 10 O O3' AMP . . . G 5 -1.123 -32.271 -14.021 1 59.52 ? O3' AMP 406 A 1 HETATM 11 C C2' AMP . . . G 5 -2.989 -31.43 -12.721 1 61.13 ? C2' AMP 406 A 1 HETATM 12 O O2' AMP . . . G 5 -3.609 -31.688 -13.984 1 63.57 ? O2' AMP 406 A 1 HETATM 13 C C1' AMP . . . G 5 -3.732 -32.136 -11.602 1 60.32 ? C1' AMP 406 A 1 HETATM 14 N N9 AMP . . . G 5 -3.675 -31.125 -10.555 1 59.85 ? N9 AMP 406 A 1 HETATM 15 C C8 AMP . . . G 5 -3.061 -31.22 -9.359 1 60 ? C8 AMP 406 A 1 HETATM 16 N N7 AMP . . . G 5 -3.195 -30.067 -8.658 1 59.54 ? N7 AMP 406 A 1 HETATM 17 C C5 AMP . . . G 5 -3.897 -29.227 -9.437 1 59.19 ? C5 AMP 406 A 1 HETATM 18 C C6 AMP . . . G 5 -4.393 -27.852 -9.317 1 58.56 ? C6 AMP 406 A 1 HETATM 19 N N6 AMP . . . G 5 -4.133 -27.17 -8.178 1 59.02 ? N6 AMP 406 A 1 HETATM 20 N N1 AMP . . . G 5 -5.095 -27.331 -10.355 1 57.22 ? N1 AMP 406 A 1 HETATM 21 C C2 AMP . . . G 5 -5.337 -28.034 -11.475 1 57.63 ? C2 AMP 406 A 1 HETATM 22 N N3 AMP . . . G 5 -4.908 -29.297 -11.667 1 58.84 ? N3 AMP 406 A 1 HETATM 23 C C4 AMP . . . G 5 -4.203 -29.923 -10.693 1 59.57 ? C4 AMP 406 A 1 # _model_server_stats.io_time_ms 99 _model_server_stats.parse_time_ms 82 _model_server_stats.create_model_time_ms 115 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 23 #