data_4GXD # _model_server_result.job_id jflmuqj3UYDsB-0k53RYuQ _model_server_result.datetime_utc '2024-11-17 12:46:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gxd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4GXD # _exptl.entry_id 4GXD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 804.061 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{(2S,3R,4E)-1-[(3,6-di-O-sulfo-beta-D-galactopyranosyl)oxy]-3-hydroxyoctadec-4-en-2-yl}dodecanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 126.07 _cell.angle_gamma 90 _cell.entry_id 4GXD _cell.length_a 78.253 _cell.length_b 47.317 _cell.length_c 63.887 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GXD _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_454 -x-1,y,-z-1 -1 0 0 0 1 0 0 0 -1 -40.638046 0 -51.639752 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C36 H69 N O14 S2' _chem_comp.formula_weight 804.061 _chem_comp.id 0SG _chem_comp.mon_nstd_flag . _chem_comp.name N-{(2S,3R,4E)-1-[(3,6-di-O-sulfo-beta-D-galactopyranosyl)oxy]-3-hydroxyoctadec-4-en-2-yl}dodecanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C17 C16 0SG sing 1 n n C14 C15 0SG sing 2 n n C14 C13 0SG sing 3 n n C16 C15 0SG sing 4 n n O9 S 0SG doub 5 n n C13 C12 0SG sing 6 n n C12 C11 0SG sing 7 n n C11 C10 0SG sing 8 n n C10 C9 0SG sing 9 n n O4 S 0SG sing 10 n n O4 C45 0SG sing 11 n n S O8 0SG doub 12 n n S O10 0SG sing 13 n n O5 C46 0SG sing 14 n n C8 C9 0SG sing 15 n n C8 C7 0SG sing 16 n n O3 C44 0SG sing 17 n n C7 C6 0SG sing 18 n n C5 C6 0SG sing 19 n n C5 C4 0SG sing 20 n n C44 C45 0SG sing 21 n n C44 C43 0SG sing 22 n n C45 C46 0SG sing 23 n n C4 C3 0SG doub 24 e n C46 C47 0SG sing 25 n n O1 C2 0SG sing 26 n n C2 C3 0SG sing 27 n n C2 C1 0SG sing 28 n n O C43 0SG sing 29 n n O C 0SG sing 30 n n C43 O6 0SG sing 31 n n O6 C47 0SG sing 32 n n C47 C48 0SG sing 33 n n C48 O11 0SG sing 34 n n N C1 0SG sing 35 n n N C18 0SG sing 36 n n C1 C 0SG sing 37 n n C19 C18 0SG sing 38 n n C19 C20 0SG sing 39 n n O13 S1 0SG doub 40 n n C18 O2 0SG doub 41 n n O11 S1 0SG sing 42 n n S1 O12 0SG doub 43 n n S1 O14 0SG sing 44 n n C21 C20 0SG sing 45 n n C21 C22 0SG sing 46 n n C23 C22 0SG sing 47 n n C23 C24 0SG sing 48 n n C25 C24 0SG sing 49 n n C25 C26 0SG sing 50 n n C26 C27 0SG sing 51 n n C27 C28 0SG sing 52 n n C28 C29 0SG sing 53 n n C17 H1 0SG sing 54 n n C17 H2 0SG sing 55 n n C17 H3 0SG sing 56 n n C16 H4 0SG sing 57 n n C16 H5 0SG sing 58 n n C15 H6 0SG sing 59 n n C15 H7 0SG sing 60 n n C14 H8 0SG sing 61 n n C14 H9 0SG sing 62 n n C13 H10 0SG sing 63 n n C13 H11 0SG sing 64 n n C12 H12 0SG sing 65 n n C12 H13 0SG sing 66 n n C11 H14 0SG sing 67 n n C11 H15 0SG sing 68 n n C10 H16 0SG sing 69 n n C10 H17 0SG sing 70 n n C9 H18 0SG sing 71 n n C9 H19 0SG sing 72 n n C8 H20 0SG sing 73 n n C8 H21 0SG sing 74 n n C7 H22 0SG sing 75 n n C7 H23 0SG sing 76 n n C6 H24 0SG sing 77 n n C6 H25 0SG sing 78 n n C5 H26 0SG sing 79 n n C5 H27 0SG sing 80 n n C4 H28 0SG sing 81 n n C3 H30 0SG sing 82 n n C2 H32 0SG sing 83 n n O1 H33 0SG sing 84 n n C1 H34 0SG sing 85 n n C H35 0SG sing 86 n n C H36 0SG sing 87 n n C43 H37 0SG sing 88 n n C44 H38 0SG sing 89 n n O3 H39 0SG sing 90 n n C45 H40 0SG sing 91 n n C46 H41 0SG sing 92 n n O5 H42 0SG sing 93 n n C47 H43 0SG sing 94 n n C48 H44 0SG sing 95 n n C48 H45 0SG sing 96 n n N H46 0SG sing 97 n n C19 H47 0SG sing 98 n n C19 H48 0SG sing 99 n n C20 H49 0SG sing 100 n n C20 H50 0SG sing 101 n n C21 H51 0SG sing 102 n n C21 H52 0SG sing 103 n n C22 H53 0SG sing 104 n n C22 H54 0SG sing 105 n n C23 H55 0SG sing 106 n n C23 H56 0SG sing 107 n n C24 H57 0SG sing 108 n n C24 H58 0SG sing 109 n n C25 H59 0SG sing 110 n n C25 H60 0SG sing 111 n n C26 H61 0SG sing 112 n n C26 H62 0SG sing 113 n n C27 H63 0SG sing 114 n n C27 H64 0SG sing 115 n n C28 H65 0SG sing 116 n n C28 H66 0SG sing 117 n n C29 H67 0SG sing 118 n n C29 H68 0SG sing 119 n n C29 H69 0SG sing 120 n n O10 H29 0SG sing 121 n n O14 H31 0SG sing 122 n n # _atom_sites.entry_id 4GXD _atom_sites.fract_transf_matrix[1][1] 0.012779 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00931 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021134 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019366 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 0SG A 1 301 1 0SG DIS . C 3 HOH A 1 401 1 HOH HOH . C 3 HOH A 2 402 2 HOH HOH . C 3 HOH A 3 403 3 HOH HOH . C 3 HOH A 4 404 4 HOH HOH . C 3 HOH A 5 405 5 HOH HOH . C 3 HOH A 6 406 6 HOH HOH . C 3 HOH A 7 407 7 HOH HOH . C 3 HOH A 8 408 8 HOH HOH . C 3 HOH A 9 409 9 HOH HOH . C 3 HOH A 10 410 10 HOH HOH . C 3 HOH A 11 411 11 HOH HOH . C 3 HOH A 12 412 12 HOH HOH . C 3 HOH A 13 413 13 HOH HOH . C 3 HOH A 14 414 14 HOH HOH . C 3 HOH A 15 415 15 HOH HOH . C 3 HOH A 16 416 16 HOH HOH . C 3 HOH A 17 417 17 HOH HOH . C 3 HOH A 18 418 18 HOH HOH . C 3 HOH A 19 419 19 HOH HOH . C 3 HOH A 20 420 20 HOH HOH . C 3 HOH A 21 421 21 HOH HOH . C 3 HOH A 22 422 22 HOH HOH . C 3 HOH A 23 423 23 HOH HOH . C 3 HOH A 24 424 24 HOH HOH . C 3 HOH A 25 425 25 HOH HOH . C 3 HOH A 26 426 26 HOH HOH . C 3 HOH A 27 427 27 HOH HOH . C 3 HOH A 28 428 28 HOH HOH . C 3 HOH A 29 429 29 HOH HOH . C 3 HOH A 30 430 30 HOH HOH . C 3 HOH A 31 431 31 HOH HOH . C 3 HOH A 32 432 32 HOH HOH . C 3 HOH A 33 433 33 HOH HOH . C 3 HOH A 34 434 34 HOH HOH . C 3 HOH A 35 435 35 HOH HOH . C 3 HOH A 36 436 36 HOH HOH . C 3 HOH A 37 437 37 HOH HOH . C 3 HOH A 38 438 38 HOH HOH . C 3 HOH A 39 439 39 HOH HOH . C 3 HOH A 40 440 40 HOH HOH . C 3 HOH A 41 441 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C17 0SG . . . B 2 -22.881 -9.177 -33.62 1 70.07 ? C17 0SG 301 A 1 HETATM 2 C C16 0SG . . . B 2 -23.171 -8.37 -32.38 1 70.57 ? C16 0SG 301 A 1 HETATM 3 C C15 0SG . . . B 2 -23.286 -9.305 -31.183 1 71.77 ? C15 0SG 301 A 1 HETATM 4 C C14 0SG . . . B 2 -23.013 -8.566 -29.886 1 73.66 ? C14 0SG 301 A 1 HETATM 5 C C13 0SG . . . B 2 -24.157 -8.764 -28.895 1 73.6 ? C13 0SG 301 A 1 HETATM 6 C C12 0SG . . . B 2 -23.82 -8.533 -27.417 1 79.12 ? C12 0SG 301 A 1 HETATM 7 C C11 0SG . . . B 2 -22.353 -8.717 -27.034 1 81.47 ? C11 0SG 301 A 1 HETATM 8 C C10 0SG . . . B 2 -22.185 -8.957 -25.541 1 82.41 ? C10 0SG 301 A 1 HETATM 9 C C9 0SG . . . B 2 -22.337 -7.672 -24.735 1 84.4 ? C9 0SG 301 A 1 HETATM 10 C C8 0SG . . . B 2 -22.632 -7.982 -23.263 1 83.97 ? C8 0SG 301 A 1 HETATM 11 C C7 0SG . . . B 2 -21.339 -8.207 -22.477 1 81.18 ? C7 0SG 301 A 1 HETATM 12 C C6 0SG . . . B 2 -21.56 -8.154 -20.968 1 70.81 ? C6 0SG 301 A 1 HETATM 13 C C5 0SG . . . B 2 -21.122 -6.82 -20.375 1 63.32 ? C5 0SG 301 A 1 HETATM 14 C C4 0SG . . . B 2 -22.285 -6.135 -19.711 1 52.75 ? C4 0SG 301 A 1 HETATM 15 C C3 0SG . . . B 2 -22.089 -4.894 -19.334 1 39.71 ? C3 0SG 301 A 1 HETATM 16 C C2 0SG . . . B 2 -23.141 -4.09 -18.642 1 38.14 ? C2 0SG 301 A 1 HETATM 17 O O1 0SG . . . B 2 -24.461 -4.704 -18.614 1 39.03 ? O1 0SG 301 A 1 HETATM 18 C C1 0SG . . . B 2 -22.702 -3.814 -17.192 1 37.17 ? C1 0SG 301 A 1 HETATM 19 C C 0SG . . . B 2 -23.667 -2.812 -16.565 1 36.16 ? C 0SG 301 A 1 HETATM 20 O O 0SG . . . B 2 -23.547 -1.62 -17.373 1 31.45 ? O 0SG 301 A 1 HETATM 21 C C43 0SG . . . B 2 -24.211 -0.53 -16.817 1 33.67 ? C43 0SG 301 A 1 HETATM 22 O O6 0SG . . . B 2 -25.593 -0.894 -16.85 1 33.43 ? O6 0SG 301 A 1 HETATM 23 C C44 0SG . . . B 2 -24.015 0.741 -17.626 1 32.63 ? C44 0SG 301 A 1 HETATM 24 O O3 0SG . . . B 2 -22.613 1.021 -17.736 1 35.27 ? O3 0SG 301 A 1 HETATM 25 C C45 0SG . . . B 2 -24.74 1.863 -16.923 1 34.33 ? C45 0SG 301 A 1 HETATM 26 O O4 0SG . . . B 2 -24.679 3.048 -17.686 1 32.29 ? O4 0SG 301 A 1 HETATM 27 S S 0SG . . . B 2 -24.653 4.434 -17.06 1 35.24 ? S 0SG 301 A 1 HETATM 28 O O9 0SG . . . B 2 -23.355 5.066 -17.065 1 36.06 ? O9 0SG 301 A 1 HETATM 29 O O8 0SG . . . B 2 -24.994 4.263 -15.628 1 41.87 ? O8 0SG 301 A 1 HETATM 30 O O10 0SG . . . B 2 -25.662 5.206 -17.741 1 46.33 ? O10 0SG 301 A 1 HETATM 31 C C46 0SG . . . B 2 -26.198 1.518 -16.743 1 35.29 ? C46 0SG 301 A 1 HETATM 32 O O5 0SG . . . B 2 -26.921 1.461 -17.977 1 35.23 ? O5 0SG 301 A 1 HETATM 33 C C47 0SG . . . B 2 -26.252 0.17 -16.121 1 38.14 ? C47 0SG 301 A 1 HETATM 34 C C48 0SG . . . B 2 -27.693 -0.152 -15.857 1 44.65 ? C48 0SG 301 A 1 HETATM 35 O O11 0SG . . . B 2 -27.512 -0.806 -14.607 1 54.95 ? O11 0SG 301 A 1 HETATM 36 S S1 0SG . . . B 2 -28.632 -1.679 -14.102 1 63.56 ? S1 0SG 301 A 1 HETATM 37 O O13 0SG . . . B 2 -28.126 -2.341 -12.868 1 65.96 ? O13 0SG 301 A 1 HETATM 38 O O14 0SG . . . B 2 -28.87 -2.607 -15.227 1 61.26 ? O14 0SG 301 A 1 HETATM 39 O O12 0SG . . . B 2 -29.749 -0.698 -13.867 1 60.05 ? O12 0SG 301 A 1 HETATM 40 N N 0SG . . . B 2 -21.372 -3.156 -17.088 1 33.77 ? N 0SG 301 A 1 HETATM 41 C C18 0SG . . . B 2 -20.398 -3.885 -16.525 1 39.08 ? C18 0SG 301 A 1 HETATM 42 O O2 0SG . . . B 2 -20.538 -5.043 -16.187 1 36.16 ? O2 0SG 301 A 1 HETATM 43 C C19 0SG . . . B 2 -19.035 -3.282 -16.346 1 42.93 ? C19 0SG 301 A 1 HETATM 44 C C20 0SG . . . B 2 -18.099 -4.009 -17.299 1 42.56 ? C20 0SG 301 A 1 HETATM 45 C C21 0SG . . . B 2 -16.679 -3.619 -17.017 1 43.22 ? C21 0SG 301 A 1 HETATM 46 C C22 0SG . . . B 2 -15.733 -4.426 -17.925 1 50.01 ? C22 0SG 301 A 1 HETATM 47 C C23 0SG . . . B 2 -14.327 -4.589 -17.328 1 50.1 ? C23 0SG 301 A 1 HETATM 48 C C24 0SG . . . B 2 -13.289 -5.064 -18.369 1 57.54 ? C24 0SG 301 A 1 HETATM 49 C C25 0SG . . . B 2 -13.637 -6.419 -18.995 1 54.76 ? C25 0SG 301 A 1 HETATM 50 C C26 0SG . . . B 2 -12.524 -6.927 -19.907 1 58.43 ? C26 0SG 301 A 1 HETATM 51 C C27 0SG . . . B 2 -12.946 -8.231 -20.577 1 60.62 ? C27 0SG 301 A 1 HETATM 52 C C28 0SG . . . B 2 -11.747 -8.864 -21.286 1 64.43 ? C28 0SG 301 A 1 HETATM 53 C C29 0SG . . . B 2 -11.5 -10.294 -20.841 1 66.6 ? C29 0SG 301 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 53 #