data_4GXE
#
_model_server_result.job_id            VOV692ITk4l2fmL8LBRgtw 
_model_server_result.datetime_utc      '2025-02-05 14:15:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4gxe 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    4GXE 
#
_exptl.entry_id    4GXE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              588.694 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            PHYCOCYANOBILIN 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4GXE 
_cell.length_a            153.75 
_cell.length_b            153.75 
_cell.length_c            39.72 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4GXE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 76.875 -133.151406 0 
3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 153.75 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 G N N 
? 3 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 84 A CYS 84 1_555 C CAC CYC . A CYC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.816 ? 
covale ? covale2 B C GLY 71 B GLY 71 1_555 B N MEN 72 B MEN 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.266 ? 
covale ? covale3 B C MEN 72 B MEN 72 1_555 B N ALA 73 B ALA 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.361 ? 
covale ? covale4 B SG CYS 82 B CYS 84 1_555 G CAC CYC . B CYC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.818 ? 
covale ? covale5 B SG CYS 153 B CYS 155 1_555 H CAC CYC . B CYC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.825 ? 
#
_chem_comp.formula           'C33 H40 N4 O6' 
_chem_comp.formula_weight    588.694 
_chem_comp.id                CYC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              PHYCOCYANOBILIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A CYC doub 70 z n 
CHA C4D CYC sing 71 n n 
CHA HHA CYC sing 72 n n 
NA C1A CYC sing 73 n n 
NA C4A CYC doub 74 n n 
C1A C2A CYC sing 75 n n 
C2A C3A CYC doub 76 n n 
C2A CAA CYC sing 77 n n 
C3A C4A CYC sing 78 n n 
C3A CMA CYC sing 79 n n 
C4A CHB CYC sing 80 n n 
CMA HMA1 CYC sing 81 n n 
CMA HMA2 CYC sing 82 n n 
CMA HMA3 CYC sing 83 n n 
CAA CBA CYC sing 84 n n 
CAA HAA1 CYC sing 85 n n 
CAA HAA2 CYC sing 86 n n 
CBA CGA CYC sing 87 n n 
CBA HBA1 CYC sing 88 n n 
CBA HBA2 CYC sing 89 n n 
CGA O1A CYC doub 90 n n 
CGA O2A CYC sing 91 n n 
O2A H2A CYC sing 92 n n 
CHB C1B CYC doub 93 z n 
CHB HHB CYC sing 94 n n 
NB C1B CYC sing 95 n n 
NB C4B CYC sing 96 n n 
NB HB CYC sing 97 n n 
C1B C2B CYC sing 98 n n 
C2B C3B CYC doub 99 n n 
C2B CMB CYC sing 100 n n 
C3B C4B CYC sing 101 n n 
C3B CAB CYC sing 102 n n 
C4B OB CYC doub 103 n n 
CMB HMB1 CYC sing 104 n n 
CMB HMB2 CYC sing 105 n n 
CMB HMB3 CYC sing 106 n n 
CAB CBB CYC sing 107 n n 
CAB HAB1 CYC sing 108 n n 
CAB HAB2 CYC sing 109 n n 
CBB HBB1 CYC sing 110 n n 
CBB HBB2 CYC sing 111 n n 
CBB HBB3 CYC sing 112 n n 
NC C1C CYC sing 113 n n 
NC C4C CYC sing 114 n n 
NC HC CYC sing 115 n n 
C1C C2C CYC sing 116 n n 
C1C OC CYC doub 117 n n 
C2C C3C CYC sing 118 n n 
C2C CMC CYC sing 119 n n 
C2C H2C CYC sing 120 n n 
C3C C4C CYC sing 121 n n 
C3C CAC CYC sing 122 n n 
C3C H3C CYC sing 123 n n 
C4C CHD CYC doub 124 z n 
CMC HMC1 CYC sing 125 n n 
CMC HMC2 CYC sing 126 n n 
CMC HMC3 CYC sing 127 n n 
CAC CBC CYC sing 128 n n 
CAC HAC1 CYC sing 129 n n 
CAC HAC2 CYC sing 130 n n 
CBC HBC1 CYC sing 131 n n 
CBC HBC2 CYC sing 132 n n 
CBC HBC3 CYC sing 133 n n 
CHD C1D CYC sing 134 n n 
CHD HHD CYC sing 135 n n 
ND C1D CYC sing 136 n y 
ND C4D CYC sing 137 n y 
ND HD CYC sing 138 n n 
C1D C2D CYC doub 139 n y 
C2D C3D CYC sing 140 n y 
C2D CMD CYC sing 141 n n 
C3D C4D CYC doub 142 n y 
C3D CAD CYC sing 143 n n 
CMD HMD1 CYC sing 144 n n 
CMD HMD2 CYC sing 145 n n 
CMD HMD3 CYC sing 146 n n 
CAD CBD CYC sing 147 n n 
CAD HAD1 CYC sing 148 n n 
CAD HAD2 CYC sing 149 n n 
CBD CGD CYC sing 150 n n 
CBD HBD1 CYC sing 151 n n 
CBD HBD2 CYC sing 152 n n 
CGD O1D CYC doub 153 n n 
CGD O2D CYC sing 154 n n 
O2D H2D CYC sing 155 n n 
#
_atom_sites.entry_id                     4GXE 
_atom_sites.fract_transf_matrix[1][1]    0.006504 
_atom_sites.fract_transf_matrix[1][2]    0.003755 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00751 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.025176 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 CYC A 1 201 484 CYC CYC . 
D 4 URE A 1 202 2 URE URE . 
E 4 URE A 1 203 4 URE URE . 
F 4 URE A 1 204 6 URE URE . 
G 3 CYC B 1 201 584 CYC CYC . 
H 3 CYC B 1 202 555 CYC CYC . 
I 4 URE B 1 203 1 URE URE . 
J 4 URE B 1 204 3 URE URE . 
K 4 URE B 1 205 5 URE URE . 
L 4 URE B 1 206 7 URE URE . 
M 5 HOH A 1 301 1 HOH HOH . 
M 5 HOH A 2 302 6 HOH HOH . 
M 5 HOH A 3 303 8 HOH HOH . 
M 5 HOH A 4 304 9 HOH HOH . 
M 5 HOH A 5 305 13 HOH HOH . 
M 5 HOH A 6 306 15 HOH HOH . 
M 5 HOH A 7 307 17 HOH HOH . 
M 5 HOH A 8 308 19 HOH HOH . 
M 5 HOH A 9 309 27 HOH HOH . 
M 5 HOH A 10 310 32 HOH HOH . 
M 5 HOH A 11 311 33 HOH HOH . 
M 5 HOH A 12 312 38 HOH HOH . 
M 5 HOH A 13 313 40 HOH HOH . 
M 5 HOH A 14 314 41 HOH HOH . 
M 5 HOH A 15 315 43 HOH HOH . 
M 5 HOH A 16 316 46 HOH HOH . 
N 5 HOH B 1 301 2 HOH HOH . 
N 5 HOH B 2 302 3 HOH HOH . 
N 5 HOH B 3 303 4 HOH HOH . 
N 5 HOH B 4 304 5 HOH HOH . 
N 5 HOH B 5 305 7 HOH HOH . 
N 5 HOH B 6 306 10 HOH HOH . 
N 5 HOH B 7 307 11 HOH HOH . 
N 5 HOH B 8 308 12 HOH HOH . 
N 5 HOH B 9 309 14 HOH HOH . 
N 5 HOH B 10 310 16 HOH HOH . 
N 5 HOH B 11 311 18 HOH HOH . 
N 5 HOH B 12 312 20 HOH HOH . 
N 5 HOH B 13 313 21 HOH HOH . 
N 5 HOH B 14 314 22 HOH HOH . 
N 5 HOH B 15 315 23 HOH HOH . 
N 5 HOH B 16 316 24 HOH HOH . 
N 5 HOH B 17 317 25 HOH HOH . 
N 5 HOH B 18 318 26 HOH HOH . 
N 5 HOH B 19 319 28 HOH HOH . 
N 5 HOH B 20 320 29 HOH HOH . 
N 5 HOH B 21 321 30 HOH HOH . 
N 5 HOH B 22 322 31 HOH HOH . 
N 5 HOH B 23 323 34 HOH HOH . 
N 5 HOH B 24 324 35 HOH HOH . 
N 5 HOH B 25 325 36 HOH HOH . 
N 5 HOH B 26 326 37 HOH HOH . 
N 5 HOH B 27 327 39 HOH HOH . 
N 5 HOH B 28 328 42 HOH HOH . 
N 5 HOH B 29 329 44 HOH HOH . 
N 5 HOH B 30 330 45 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA CYC . . . C 3 39.235 -32.061 4.537 1 3.73 ? CHA CYC 201 A 1 
HETATM 2 N NA CYC . . . C 3 41.128 -30.751 3.671 1 2.09 ? NA CYC 201 A 1 
HETATM 3 C C1A CYC . . . C 3 40.555 -31.792 4.343 1 2.42 ? C1A CYC 201 A 1 
HETATM 4 C C2A CYC . . . C 3 41.606 -32.658 4.905 1 1.93 ? C2A CYC 201 A 1 
HETATM 5 C C3A CYC . . . C 3 42.825 -32.012 4.477 1 1.74 ? C3A CYC 201 A 1 
HETATM 6 C C4A CYC . . . C 3 42.492 -30.815 3.709 1 1.7 ? C4A CYC 201 A 1 
HETATM 7 C CMA CYC . . . C 3 44.196 -32.531 4.803 1 1.46 ? CMA CYC 201 A 1 
HETATM 8 C CAA CYC . . . C 3 41.416 -33.916 5.723 1 1.63 ? CAA CYC 201 A 1 
HETATM 9 C CBA CYC . . . C 3 41.935 -33.913 7.08 1 1.28 ? CBA CYC 201 A 1 
HETATM 10 C CGA CYC . . . C 3 40.956 -33.16 7.923 1 1.12 ? CGA CYC 201 A 1 
HETATM 11 O O1A CYC . . . C 3 41.402 -32.104 8.379 1 1.04 ? O1A CYC 201 A 1 
HETATM 12 O O2A CYC . . . C 3 39.796 -33.595 8.13 1 1.04 ? O2A CYC 201 A 1 
HETATM 13 C CHB CYC . . . C 3 43.351 -29.788 3.055 1 1.39 ? CHB CYC 201 A 1 
HETATM 14 N NB CYC . . . C 3 45.038 -29.539 4.73 1 1.04 ? NB CYC 201 A 1 
HETATM 15 C C1B CYC . . . C 3 44.523 -29.212 3.547 1 1.12 ? C1B CYC 201 A 1 
HETATM 16 C C2B CYC . . . C 3 45.34 -28.219 2.901 1 1.04 ? C2B CYC 201 A 1 
HETATM 17 C C3B CYC . . . C 3 46.43 -27.929 3.755 1 1.01 ? C3B CYC 201 A 1 
HETATM 18 C C4B CYC . . . C 3 46.134 -28.802 4.836 1 1.01 ? C4B CYC 201 A 1 
HETATM 19 C CMB CYC . . . C 3 45.078 -27.631 1.6 1 1.01 ? CMB CYC 201 A 1 
HETATM 20 C CAB CYC . . . C 3 47.594 -26.981 3.599 1 1 ? CAB CYC 201 A 1 
HETATM 21 C CBB CYC . . . C 3 47.588 -25.87 4.684 1 1 ? CBB CYC 201 A 1 
HETATM 22 O OB CYC . . . C 3 46.971 -28.838 5.91 1 1 ? OB CYC 201 A 1 
HETATM 23 N NC CYC . . . C 3 33.913 -29.3 1.448 1 15.64 ? NC CYC 201 A 1 
HETATM 24 C C1C CYC . . . C 3 33.007 -28.632 0.785 1 16.35 ? C1C CYC 201 A 1 
HETATM 25 C C2C CYC . . . C 3 33.453 -27.257 0.263 1 17.25 ? C2C CYC 201 A 1 
HETATM 26 C C3C CYC . . . C 3 34.917 -27.385 0.444 1 18.66 ? C3C CYC 201 A 1 
HETATM 27 C C4C CYC . . . C 3 35.051 -28.566 1.404 1 15.48 ? C4C CYC 201 A 1 
HETATM 28 C CMC CYC . . . C 3 32.904 -26.92 -1.125 1 16.93 ? CMC CYC 201 A 1 
HETATM 29 C CAC CYC . . . C 3 35.77 -26.131 0.772 1 23.2 ? CAC CYC 201 A 1 
HETATM 30 C CBC CYC . . . C 3 36.234 -25.325 -0.359 1 23.32 ? CBC CYC 201 A 1 
HETATM 31 O OC CYC . . . C 3 31.78 -29.029 0.513 1 15.96 ? OC CYC 201 A 1 
HETATM 32 C CHD CYC . . . C 3 36.198 -28.942 2.083 1 11.46 ? CHD CYC 201 A 1 
HETATM 33 N ND CYC . . . C 3 37.905 -30.328 3.195 1 6.36 ? ND CYC 201 A 1 
HETATM 34 C C1D CYC . . . C 3 36.544 -30.068 2.99 1 7.8 ? C1D CYC 201 A 1 
HETATM 35 C C2D CYC . . . C 3 35.767 -31.004 3.737 1 6.34 ? C2D CYC 201 A 1 
HETATM 36 C C3D CYC . . . C 3 36.712 -31.903 4.432 1 5.17 ? C3D CYC 201 A 1 
HETATM 37 C C4D CYC . . . C 3 38.026 -31.417 4.047 1 5.01 ? C4D CYC 201 A 1 
HETATM 38 C CMD CYC . . . C 3 34.26 -31.106 3.826 1 6 ? CMD CYC 201 A 1 
HETATM 39 C CAD CYC . . . C 3 36.409 -33.068 5.338 1 4.17 ? CAD CYC 201 A 1 
HETATM 40 C CBD CYC . . . C 3 36.466 -34.379 4.754 1 3.04 ? CBD CYC 201 A 1 
HETATM 41 C CGD CYC . . . C 3 36.147 -35.49 5.748 1 2.52 ? CGD CYC 201 A 1 
HETATM 42 O O1D CYC . . . C 3 35.863 -36.596 5.379 1 2.19 ? O1D CYC 201 A 1 
HETATM 43 O O2D CYC . . . C 3 36.163 -35.316 7.053 1 2.19 ? O2D CYC 201 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           43 
#