data_4GXE # _model_server_result.job_id mGm2OKnPSo0GVI04Q7kwmg _model_server_result.datetime_utc '2025-02-05 14:00:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gxe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":205}' # _entry.id 4GXE # _exptl.entry_id 4GXE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 60.055 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description UREA _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4GXE _cell.length_a 153.75 _cell.length_b 153.75 _cell.length_c 39.72 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GXE _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 76.875 -133.151406 0 3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 153.75 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 84 A CYS 84 1_555 C CAC CYC . A CYC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.816 ? covale ? covale2 B C GLY 71 B GLY 71 1_555 B N MEN 72 B MEN 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.266 ? covale ? covale3 B C MEN 72 B MEN 72 1_555 B N ALA 73 B ALA 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.361 ? covale ? covale4 B SG CYS 82 B CYS 84 1_555 G CAC CYC . B CYC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.818 ? covale ? covale5 B SG CYS 153 B CYS 155 1_555 H CAC CYC . B CYC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.825 ? # _chem_comp.formula 'C H4 N2 O' _chem_comp.formula_weight 60.055 _chem_comp.id URE _chem_comp.mon_nstd_flag . _chem_comp.name UREA _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O URE doub 463 n n C N1 URE sing 464 n n C N2 URE sing 465 n n N1 HN11 URE sing 466 n n N1 HN12 URE sing 467 n n N2 HN21 URE sing 468 n n N2 HN22 URE sing 469 n n # _atom_sites.entry_id 4GXE _atom_sites.fract_transf_matrix[1][1] 0.006504 _atom_sites.fract_transf_matrix[1][2] 0.003755 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00751 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025176 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CYC A 1 201 484 CYC CYC . D 4 URE A 1 202 2 URE URE . E 4 URE A 1 203 4 URE URE . F 4 URE A 1 204 6 URE URE . G 3 CYC B 1 201 584 CYC CYC . H 3 CYC B 1 202 555 CYC CYC . I 4 URE B 1 203 1 URE URE . J 4 URE B 1 204 3 URE URE . K 4 URE B 1 205 5 URE URE . L 4 URE B 1 206 7 URE URE . M 5 HOH A 1 301 1 HOH HOH . M 5 HOH A 2 302 6 HOH HOH . M 5 HOH A 3 303 8 HOH HOH . M 5 HOH A 4 304 9 HOH HOH . M 5 HOH A 5 305 13 HOH HOH . M 5 HOH A 6 306 15 HOH HOH . M 5 HOH A 7 307 17 HOH HOH . M 5 HOH A 8 308 19 HOH HOH . M 5 HOH A 9 309 27 HOH HOH . M 5 HOH A 10 310 32 HOH HOH . M 5 HOH A 11 311 33 HOH HOH . M 5 HOH A 12 312 38 HOH HOH . M 5 HOH A 13 313 40 HOH HOH . M 5 HOH A 14 314 41 HOH HOH . M 5 HOH A 15 315 43 HOH HOH . M 5 HOH A 16 316 46 HOH HOH . N 5 HOH B 1 301 2 HOH HOH . N 5 HOH B 2 302 3 HOH HOH . N 5 HOH B 3 303 4 HOH HOH . N 5 HOH B 4 304 5 HOH HOH . N 5 HOH B 5 305 7 HOH HOH . N 5 HOH B 6 306 10 HOH HOH . N 5 HOH B 7 307 11 HOH HOH . N 5 HOH B 8 308 12 HOH HOH . N 5 HOH B 9 309 14 HOH HOH . N 5 HOH B 10 310 16 HOH HOH . N 5 HOH B 11 311 18 HOH HOH . N 5 HOH B 12 312 20 HOH HOH . N 5 HOH B 13 313 21 HOH HOH . N 5 HOH B 14 314 22 HOH HOH . N 5 HOH B 15 315 23 HOH HOH . N 5 HOH B 16 316 24 HOH HOH . N 5 HOH B 17 317 25 HOH HOH . N 5 HOH B 18 318 26 HOH HOH . N 5 HOH B 19 319 28 HOH HOH . N 5 HOH B 20 320 29 HOH HOH . N 5 HOH B 21 321 30 HOH HOH . N 5 HOH B 22 322 31 HOH HOH . N 5 HOH B 23 323 34 HOH HOH . N 5 HOH B 24 324 35 HOH HOH . N 5 HOH B 25 325 36 HOH HOH . N 5 HOH B 26 326 37 HOH HOH . N 5 HOH B 27 327 39 HOH HOH . N 5 HOH B 28 328 42 HOH HOH . N 5 HOH B 29 329 44 HOH HOH . N 5 HOH B 30 330 45 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C URE . . . K 4 97.982 -30.996 21.18 1 61.94 ? C URE 205 B 1 HETATM 2 O O URE . . . K 4 98.45 -30.847 22.295 1 61.97 ? O URE 205 B 1 HETATM 3 N N1 URE . . . K 4 97.253 -32.097 20.896 1 61.86 ? N1 URE 205 B 1 HETATM 4 N N2 URE . . . K 4 98.191 -30.06 20.23 1 61.32 ? N2 URE 205 B 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #