data_4GXN
#
_model_server_result.job_id            mVmmyI8nmECoh1Icbw0NmA 
_model_server_result.datetime_utc      '2024-11-13 07:57:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4gxn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":302}' 
#
_entry.id    4GXN 
#
_exptl.entry_id    4GXN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              138.102 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIETHYL PHOSPHONATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4GXN 
_cell.length_a            65.574 
_cell.length_b            65.574 
_cell.length_c            63.465 
_cell.Z_PDB               3 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4GXN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        145 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OG SER 99 A SER 79 1_555 C P DEP . A DEP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.606 ? 
metalc ? metalc1 A OD1 ASN 230 A ASN 210 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? 
metalc ? metalc2 A OD2 ASP 233 A ASP 213 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? 
metalc ? metalc3 A OD1 ASP 276 A ASP 256 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? 
metalc ? metalc4 A O GLN 280 A GLN 260 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? 
metalc ? metalc5 A O LEU 284 A LEU 264 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? 
metalc ? metalc6 B CA CA . A CA 301 1_555 E O HOH . A HOH 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? 
#
_chem_comp.formula           'C4 H11 O3 P' 
_chem_comp.formula_weight    138.102 
_chem_comp.id                DEP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIETHYL PHOSPHONATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 DEP sing 83 n n 
C1 O1 DEP sing 84 n n 
C1 H11 DEP sing 85 n n 
C1 H12 DEP sing 86 n n 
C2 H21 DEP sing 87 n n 
C2 H22 DEP sing 88 n n 
C2 H23 DEP sing 89 n n 
C3 C4 DEP sing 90 n n 
C3 O2 DEP sing 91 n n 
C3 H31 DEP sing 92 n n 
C3 H32 DEP sing 93 n n 
C4 H41 DEP sing 94 n n 
C4 H42 DEP sing 95 n n 
C4 H43 DEP sing 96 n n 
O1 P DEP sing 97 n n 
O2 P DEP sing 98 n n 
O3 P DEP doub 99 n n 
HP1 P DEP sing 100 n n 
#
_atom_sites.entry_id                     4GXN 
_atom_sites.fract_transf_matrix[1][1]    0.01525 
_atom_sites.fract_transf_matrix[1][2]    0.008805 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017609 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015757 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 301 301 CA CA . 
C 3 DEP A 1 302 401 DEP DEP . 
D 4 PGE A 1 303 501 PGE PGE . 
E 5 HOH A 1 401 3 HOH HOH . 
E 5 HOH A 2 402 4 HOH HOH . 
E 5 HOH A 3 403 6 HOH HOH . 
E 5 HOH A 4 404 7 HOH HOH . 
E 5 HOH A 5 405 8 HOH HOH . 
E 5 HOH A 6 406 9 HOH HOH . 
E 5 HOH A 7 407 10 HOH HOH . 
E 5 HOH A 8 408 11 HOH HOH . 
E 5 HOH A 9 409 12 HOH HOH . 
E 5 HOH A 10 410 13 HOH HOH . 
E 5 HOH A 11 411 14 HOH HOH . 
E 5 HOH A 12 412 15 HOH HOH . 
E 5 HOH A 13 413 16 HOH HOH . 
E 5 HOH A 14 414 17 HOH HOH . 
E 5 HOH A 15 415 18 HOH HOH . 
E 5 HOH A 16 416 19 HOH HOH . 
E 5 HOH A 17 417 20 HOH HOH . 
E 5 HOH A 18 418 21 HOH HOH . 
E 5 HOH A 19 419 23 HOH HOH . 
E 5 HOH A 20 420 24 HOH HOH . 
E 5 HOH A 21 421 25 HOH HOH . 
E 5 HOH A 22 422 26 HOH HOH . 
E 5 HOH A 23 423 27 HOH HOH . 
E 5 HOH A 24 424 28 HOH HOH . 
E 5 HOH A 25 425 29 HOH HOH . 
E 5 HOH A 26 426 30 HOH HOH . 
E 5 HOH A 27 427 31 HOH HOH . 
E 5 HOH A 28 428 32 HOH HOH . 
E 5 HOH A 29 429 33 HOH HOH . 
E 5 HOH A 30 430 34 HOH HOH . 
E 5 HOH A 31 431 35 HOH HOH . 
E 5 HOH A 32 432 36 HOH HOH . 
E 5 HOH A 33 433 37 HOH HOH . 
E 5 HOH A 34 434 38 HOH HOH . 
E 5 HOH A 35 435 39 HOH HOH . 
E 5 HOH A 36 436 40 HOH HOH . 
E 5 HOH A 37 437 41 HOH HOH . 
E 5 HOH A 38 438 42 HOH HOH . 
E 5 HOH A 39 439 44 HOH HOH . 
E 5 HOH A 40 440 45 HOH HOH . 
E 5 HOH A 41 441 46 HOH HOH . 
E 5 HOH A 42 442 47 HOH HOH . 
E 5 HOH A 43 443 50 HOH HOH . 
E 5 HOH A 44 444 51 HOH HOH . 
E 5 HOH A 45 445 52 HOH HOH . 
E 5 HOH A 46 446 53 HOH HOH . 
E 5 HOH A 47 447 54 HOH HOH . 
E 5 HOH A 48 448 55 HOH HOH . 
E 5 HOH A 49 449 56 HOH HOH . 
E 5 HOH A 50 450 57 HOH HOH . 
E 5 HOH A 51 451 58 HOH HOH . 
E 5 HOH A 52 452 59 HOH HOH . 
E 5 HOH A 53 453 60 HOH HOH . 
E 5 HOH A 54 454 61 HOH HOH . 
E 5 HOH A 55 455 62 HOH HOH . 
E 5 HOH A 56 456 64 HOH HOH . 
E 5 HOH A 57 457 65 HOH HOH . 
E 5 HOH A 58 458 66 HOH HOH . 
E 5 HOH A 59 459 67 HOH HOH . 
E 5 HOH A 60 460 68 HOH HOH . 
E 5 HOH A 61 461 69 HOH HOH . 
E 5 HOH A 62 462 70 HOH HOH . 
E 5 HOH A 63 463 71 HOH HOH . 
E 5 HOH A 64 464 72 HOH HOH . 
E 5 HOH A 65 465 73 HOH HOH . 
E 5 HOH A 66 466 74 HOH HOH . 
E 5 HOH A 67 467 75 HOH HOH . 
E 5 HOH A 68 468 76 HOH HOH . 
E 5 HOH A 69 469 77 HOH HOH . 
E 5 HOH A 70 470 78 HOH HOH . 
E 5 HOH A 71 471 79 HOH HOH . 
E 5 HOH A 72 472 80 HOH HOH . 
E 5 HOH A 73 473 81 HOH HOH . 
E 5 HOH A 74 474 82 HOH HOH . 
E 5 HOH A 75 475 83 HOH HOH . 
E 5 HOH A 76 476 84 HOH HOH . 
E 5 HOH A 77 477 85 HOH HOH . 
E 5 HOH A 78 478 86 HOH HOH . 
E 5 HOH A 79 479 87 HOH HOH . 
E 5 HOH A 80 480 88 HOH HOH . 
E 5 HOH A 81 481 89 HOH HOH . 
E 5 HOH A 82 482 90 HOH HOH . 
E 5 HOH A 83 483 92 HOH HOH . 
E 5 HOH A 84 484 93 HOH HOH . 
E 5 HOH A 85 485 94 HOH HOH . 
E 5 HOH A 86 486 95 HOH HOH . 
E 5 HOH A 87 487 96 HOH HOH . 
E 5 HOH A 88 488 97 HOH HOH . 
E 5 HOH A 89 489 98 HOH HOH . 
E 5 HOH A 90 490 99 HOH HOH . 
E 5 HOH A 91 491 100 HOH HOH . 
E 5 HOH A 92 492 101 HOH HOH . 
E 5 HOH A 93 493 102 HOH HOH . 
E 5 HOH A 94 494 103 HOH HOH . 
E 5 HOH A 95 495 495 HOH HOH . 
E 5 HOH A 96 496 107 HOH HOH . 
E 5 HOH A 97 497 108 HOH HOH . 
E 5 HOH A 98 498 109 HOH HOH . 
E 5 HOH A 99 499 110 HOH HOH . 
E 5 HOH A 100 500 112 HOH HOH . 
E 5 HOH A 101 501 113 HOH HOH . 
E 5 HOH A 102 502 114 HOH HOH . 
E 5 HOH A 103 503 115 HOH HOH . 
E 5 HOH A 104 504 118 HOH HOH . 
E 5 HOH A 105 505 119 HOH HOH . 
E 5 HOH A 106 506 120 HOH HOH . 
E 5 HOH A 107 507 121 HOH HOH . 
E 5 HOH A 108 508 122 HOH HOH . 
E 5 HOH A 109 509 123 HOH HOH . 
E 5 HOH A 110 510 124 HOH HOH . 
E 5 HOH A 111 511 126 HOH HOH . 
E 5 HOH A 112 512 127 HOH HOH . 
E 5 HOH A 113 513 128 HOH HOH . 
E 5 HOH A 114 514 129 HOH HOH . 
E 5 HOH A 115 515 130 HOH HOH . 
E 5 HOH A 116 516 131 HOH HOH . 
E 5 HOH A 117 517 132 HOH HOH . 
E 5 HOH A 118 518 133 HOH HOH . 
E 5 HOH A 119 519 134 HOH HOH . 
E 5 HOH A 120 520 135 HOH HOH . 
E 5 HOH A 121 521 136 HOH HOH . 
E 5 HOH A 122 522 137 HOH HOH . 
E 5 HOH A 123 523 138 HOH HOH . 
E 5 HOH A 124 524 140 HOH HOH . 
E 5 HOH A 125 525 142 HOH HOH . 
E 5 HOH A 126 526 143 HOH HOH . 
E 5 HOH A 127 527 144 HOH HOH . 
E 5 HOH A 128 528 145 HOH HOH . 
E 5 HOH A 129 529 146 HOH HOH . 
E 5 HOH A 130 530 148 HOH HOH . 
E 5 HOH A 131 531 149 HOH HOH . 
E 5 HOH A 132 532 150 HOH HOH . 
E 5 HOH A 133 533 151 HOH HOH . 
E 5 HOH A 134 534 153 HOH HOH . 
E 5 HOH A 135 535 155 HOH HOH . 
E 5 HOH A 136 536 157 HOH HOH . 
E 5 HOH A 137 537 158 HOH HOH . 
E 5 HOH A 138 538 159 HOH HOH . 
E 5 HOH A 139 539 160 HOH HOH . 
E 5 HOH A 140 540 162 HOH HOH . 
E 5 HOH A 141 541 163 HOH HOH . 
E 5 HOH A 142 542 164 HOH HOH . 
E 5 HOH A 143 543 166 HOH HOH . 
E 5 HOH A 144 544 167 HOH HOH . 
E 5 HOH A 145 545 168 HOH HOH . 
E 5 HOH A 146 546 169 HOH HOH . 
E 5 HOH A 147 547 170 HOH HOH . 
E 5 HOH A 148 548 171 HOH HOH . 
E 5 HOH A 149 549 172 HOH HOH . 
E 5 HOH A 150 550 173 HOH HOH . 
E 5 HOH A 151 551 174 HOH HOH . 
E 5 HOH A 152 552 175 HOH HOH . 
E 5 HOH A 153 553 176 HOH HOH . 
E 5 HOH A 154 554 177 HOH HOH . 
E 5 HOH A 155 555 178 HOH HOH . 
E 5 HOH A 156 556 179 HOH HOH . 
E 5 HOH A 157 557 180 HOH HOH . 
E 5 HOH A 158 558 182 HOH HOH . 
E 5 HOH A 159 559 184 HOH HOH . 
E 5 HOH A 160 560 185 HOH HOH . 
E 5 HOH A 161 561 186 HOH HOH . 
E 5 HOH A 162 562 187 HOH HOH . 
E 5 HOH A 163 563 189 HOH HOH . 
E 5 HOH A 164 564 190 HOH HOH . 
E 5 HOH A 165 565 191 HOH HOH . 
E 5 HOH A 166 566 192 HOH HOH . 
E 5 HOH A 167 567 193 HOH HOH . 
E 5 HOH A 168 568 194 HOH HOH . 
E 5 HOH A 169 569 196 HOH HOH . 
E 5 HOH A 170 570 197 HOH HOH . 
E 5 HOH A 171 571 198 HOH HOH . 
E 5 HOH A 172 572 200 HOH HOH . 
E 5 HOH A 173 573 202 HOH HOH . 
E 5 HOH A 174 574 203 HOH HOH . 
E 5 HOH A 175 575 204 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 DEP . . . C 3 11.452 11.268 7.803 1 27.23 ? C1 DEP 302 A 1 
HETATM 2 C C2 DEP . . . C 3 10.616 11.159 9.058 1 27.54 ? C2 DEP 302 A 1 
HETATM 3 C C3 DEP . . . C 3 15.764 11.292 8.432 1 24.88 ? C3 DEP 302 A 1 
HETATM 4 C C4 DEP . . . C 3 17.251 11.056 8.6 1 24.9 ? C4 DEP 302 A 1 
HETATM 5 O O1 DEP . . . C 3 12.815 10.948 8.072 1 26.71 ? O1 DEP 302 A 1 
HETATM 6 O O2 DEP . . . C 3 15.215 10.319 7.545 1 25.03 ? O2 DEP 302 A 1 
HETATM 7 O O3 DEP . . . C 3 13.292 9.239 6.292 1 26.1 ? O3 DEP 302 A 1 
HETATM 8 P P DEP . . . C 3 13.787 10.553 6.845 1 26.18 ? P DEP 302 A 1 
#
_model_server_stats.io_time_ms              60 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           265 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           8 
#