data_4GXN # _model_server_result.job_id vehoz51UtUsK1WXrsNeqFg _model_server_result.datetime_utc '2024-11-13 07:57:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gxn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 4GXN # _exptl.entry_id 4GXN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.173 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TRIETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4GXN _cell.length_a 65.574 _cell.length_b 65.574 _cell.length_c 63.465 _cell.Z_PDB 3 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GXN _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 99 A SER 79 1_555 C P DEP . A DEP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.606 ? metalc ? metalc1 A OD1 ASN 230 A ASN 210 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc2 A OD2 ASP 233 A ASP 213 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc3 A OD1 ASP 276 A ASP 256 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc4 A O GLN 280 A GLN 260 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc5 A O LEU 284 A LEU 264 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc6 B CA CA . A CA 301 1_555 E O HOH . A HOH 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? # _chem_comp.formula 'C6 H14 O4' _chem_comp.formula_weight 150.173 _chem_comp.id PGE _chem_comp.mon_nstd_flag . _chem_comp.name 'TRIETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PGE sing 255 n n C1 C2 PGE sing 256 n n C1 H1 PGE sing 257 n n C1 H12 PGE sing 258 n n O1 HO1 PGE sing 259 n n C2 O2 PGE sing 260 n n C2 H2 PGE sing 261 n n C2 H22 PGE sing 262 n n O2 C3 PGE sing 263 n n C3 C4 PGE sing 264 n n C3 H3 PGE sing 265 n n C3 H32 PGE sing 266 n n C4 O3 PGE sing 267 n n C4 H4 PGE sing 268 n n C4 H42 PGE sing 269 n n O4 C6 PGE sing 270 n n O4 HO4 PGE sing 271 n n C6 C5 PGE sing 272 n n C6 H6 PGE sing 273 n n C6 H62 PGE sing 274 n n C5 O3 PGE sing 275 n n C5 H5 PGE sing 276 n n C5 H52 PGE sing 277 n n # _atom_sites.entry_id 4GXN _atom_sites.fract_transf_matrix[1][1] 0.01525 _atom_sites.fract_transf_matrix[1][2] 0.008805 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017609 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015757 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 301 301 CA CA . C 3 DEP A 1 302 401 DEP DEP . D 4 PGE A 1 303 501 PGE PGE . E 5 HOH A 1 401 3 HOH HOH . E 5 HOH A 2 402 4 HOH HOH . E 5 HOH A 3 403 6 HOH HOH . E 5 HOH A 4 404 7 HOH HOH . E 5 HOH A 5 405 8 HOH HOH . E 5 HOH A 6 406 9 HOH HOH . E 5 HOH A 7 407 10 HOH HOH . E 5 HOH A 8 408 11 HOH HOH . E 5 HOH A 9 409 12 HOH HOH . E 5 HOH A 10 410 13 HOH HOH . E 5 HOH A 11 411 14 HOH HOH . E 5 HOH A 12 412 15 HOH HOH . E 5 HOH A 13 413 16 HOH HOH . E 5 HOH A 14 414 17 HOH HOH . E 5 HOH A 15 415 18 HOH HOH . E 5 HOH A 16 416 19 HOH HOH . E 5 HOH A 17 417 20 HOH HOH . E 5 HOH A 18 418 21 HOH HOH . E 5 HOH A 19 419 23 HOH HOH . E 5 HOH A 20 420 24 HOH HOH . E 5 HOH A 21 421 25 HOH HOH . E 5 HOH A 22 422 26 HOH HOH . E 5 HOH A 23 423 27 HOH HOH . E 5 HOH A 24 424 28 HOH HOH . E 5 HOH A 25 425 29 HOH HOH . E 5 HOH A 26 426 30 HOH HOH . E 5 HOH A 27 427 31 HOH HOH . E 5 HOH A 28 428 32 HOH HOH . E 5 HOH A 29 429 33 HOH HOH . E 5 HOH A 30 430 34 HOH HOH . E 5 HOH A 31 431 35 HOH HOH . E 5 HOH A 32 432 36 HOH HOH . E 5 HOH A 33 433 37 HOH HOH . E 5 HOH A 34 434 38 HOH HOH . E 5 HOH A 35 435 39 HOH HOH . E 5 HOH A 36 436 40 HOH HOH . E 5 HOH A 37 437 41 HOH HOH . E 5 HOH A 38 438 42 HOH HOH . E 5 HOH A 39 439 44 HOH HOH . E 5 HOH A 40 440 45 HOH HOH . E 5 HOH A 41 441 46 HOH HOH . E 5 HOH A 42 442 47 HOH HOH . E 5 HOH A 43 443 50 HOH HOH . E 5 HOH A 44 444 51 HOH HOH . E 5 HOH A 45 445 52 HOH HOH . E 5 HOH A 46 446 53 HOH HOH . E 5 HOH A 47 447 54 HOH HOH . E 5 HOH A 48 448 55 HOH HOH . E 5 HOH A 49 449 56 HOH HOH . E 5 HOH A 50 450 57 HOH HOH . E 5 HOH A 51 451 58 HOH HOH . E 5 HOH A 52 452 59 HOH HOH . E 5 HOH A 53 453 60 HOH HOH . E 5 HOH A 54 454 61 HOH HOH . E 5 HOH A 55 455 62 HOH HOH . E 5 HOH A 56 456 64 HOH HOH . E 5 HOH A 57 457 65 HOH HOH . E 5 HOH A 58 458 66 HOH HOH . E 5 HOH A 59 459 67 HOH HOH . E 5 HOH A 60 460 68 HOH HOH . E 5 HOH A 61 461 69 HOH HOH . E 5 HOH A 62 462 70 HOH HOH . E 5 HOH A 63 463 71 HOH HOH . E 5 HOH A 64 464 72 HOH HOH . E 5 HOH A 65 465 73 HOH HOH . E 5 HOH A 66 466 74 HOH HOH . E 5 HOH A 67 467 75 HOH HOH . E 5 HOH A 68 468 76 HOH HOH . E 5 HOH A 69 469 77 HOH HOH . E 5 HOH A 70 470 78 HOH HOH . E 5 HOH A 71 471 79 HOH HOH . E 5 HOH A 72 472 80 HOH HOH . E 5 HOH A 73 473 81 HOH HOH . E 5 HOH A 74 474 82 HOH HOH . E 5 HOH A 75 475 83 HOH HOH . E 5 HOH A 76 476 84 HOH HOH . E 5 HOH A 77 477 85 HOH HOH . E 5 HOH A 78 478 86 HOH HOH . E 5 HOH A 79 479 87 HOH HOH . E 5 HOH A 80 480 88 HOH HOH . E 5 HOH A 81 481 89 HOH HOH . E 5 HOH A 82 482 90 HOH HOH . E 5 HOH A 83 483 92 HOH HOH . E 5 HOH A 84 484 93 HOH HOH . E 5 HOH A 85 485 94 HOH HOH . E 5 HOH A 86 486 95 HOH HOH . E 5 HOH A 87 487 96 HOH HOH . E 5 HOH A 88 488 97 HOH HOH . E 5 HOH A 89 489 98 HOH HOH . E 5 HOH A 90 490 99 HOH HOH . E 5 HOH A 91 491 100 HOH HOH . E 5 HOH A 92 492 101 HOH HOH . E 5 HOH A 93 493 102 HOH HOH . E 5 HOH A 94 494 103 HOH HOH . E 5 HOH A 95 495 495 HOH HOH . E 5 HOH A 96 496 107 HOH HOH . E 5 HOH A 97 497 108 HOH HOH . E 5 HOH A 98 498 109 HOH HOH . E 5 HOH A 99 499 110 HOH HOH . E 5 HOH A 100 500 112 HOH HOH . E 5 HOH A 101 501 113 HOH HOH . E 5 HOH A 102 502 114 HOH HOH . E 5 HOH A 103 503 115 HOH HOH . E 5 HOH A 104 504 118 HOH HOH . E 5 HOH A 105 505 119 HOH HOH . E 5 HOH A 106 506 120 HOH HOH . E 5 HOH A 107 507 121 HOH HOH . E 5 HOH A 108 508 122 HOH HOH . E 5 HOH A 109 509 123 HOH HOH . E 5 HOH A 110 510 124 HOH HOH . E 5 HOH A 111 511 126 HOH HOH . E 5 HOH A 112 512 127 HOH HOH . E 5 HOH A 113 513 128 HOH HOH . E 5 HOH A 114 514 129 HOH HOH . E 5 HOH A 115 515 130 HOH HOH . E 5 HOH A 116 516 131 HOH HOH . E 5 HOH A 117 517 132 HOH HOH . E 5 HOH A 118 518 133 HOH HOH . E 5 HOH A 119 519 134 HOH HOH . E 5 HOH A 120 520 135 HOH HOH . E 5 HOH A 121 521 136 HOH HOH . E 5 HOH A 122 522 137 HOH HOH . E 5 HOH A 123 523 138 HOH HOH . E 5 HOH A 124 524 140 HOH HOH . E 5 HOH A 125 525 142 HOH HOH . E 5 HOH A 126 526 143 HOH HOH . E 5 HOH A 127 527 144 HOH HOH . E 5 HOH A 128 528 145 HOH HOH . E 5 HOH A 129 529 146 HOH HOH . E 5 HOH A 130 530 148 HOH HOH . E 5 HOH A 131 531 149 HOH HOH . E 5 HOH A 132 532 150 HOH HOH . E 5 HOH A 133 533 151 HOH HOH . E 5 HOH A 134 534 153 HOH HOH . E 5 HOH A 135 535 155 HOH HOH . E 5 HOH A 136 536 157 HOH HOH . E 5 HOH A 137 537 158 HOH HOH . E 5 HOH A 138 538 159 HOH HOH . E 5 HOH A 139 539 160 HOH HOH . E 5 HOH A 140 540 162 HOH HOH . E 5 HOH A 141 541 163 HOH HOH . E 5 HOH A 142 542 164 HOH HOH . E 5 HOH A 143 543 166 HOH HOH . E 5 HOH A 144 544 167 HOH HOH . E 5 HOH A 145 545 168 HOH HOH . E 5 HOH A 146 546 169 HOH HOH . E 5 HOH A 147 547 170 HOH HOH . E 5 HOH A 148 548 171 HOH HOH . E 5 HOH A 149 549 172 HOH HOH . E 5 HOH A 150 550 173 HOH HOH . E 5 HOH A 151 551 174 HOH HOH . E 5 HOH A 152 552 175 HOH HOH . E 5 HOH A 153 553 176 HOH HOH . E 5 HOH A 154 554 177 HOH HOH . E 5 HOH A 155 555 178 HOH HOH . E 5 HOH A 156 556 179 HOH HOH . E 5 HOH A 157 557 180 HOH HOH . E 5 HOH A 158 558 182 HOH HOH . E 5 HOH A 159 559 184 HOH HOH . E 5 HOH A 160 560 185 HOH HOH . E 5 HOH A 161 561 186 HOH HOH . E 5 HOH A 162 562 187 HOH HOH . E 5 HOH A 163 563 189 HOH HOH . E 5 HOH A 164 564 190 HOH HOH . E 5 HOH A 165 565 191 HOH HOH . E 5 HOH A 166 566 192 HOH HOH . E 5 HOH A 167 567 193 HOH HOH . E 5 HOH A 168 568 194 HOH HOH . E 5 HOH A 169 569 196 HOH HOH . E 5 HOH A 170 570 197 HOH HOH . E 5 HOH A 171 571 198 HOH HOH . E 5 HOH A 172 572 200 HOH HOH . E 5 HOH A 173 573 202 HOH HOH . E 5 HOH A 174 574 203 HOH HOH . E 5 HOH A 175 575 204 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGE . . . D 4 5.302 1.27 9.343 1 53.49 ? C1 PGE 303 A 1 HETATM 2 O O1 PGE . . . D 4 5.409 2.413 10.202 1 53.23 ? O1 PGE 303 A 1 HETATM 3 C C2 PGE . . . D 4 5.939 0.043 9.984 1 53.86 ? C2 PGE 303 A 1 HETATM 4 O O2 PGE . . . D 4 4.996 -0.606 10.836 1 55.44 ? O2 PGE 303 A 1 HETATM 5 C C3 PGE . . . D 4 5.575 -1.673 11.588 1 55.66 ? C3 PGE 303 A 1 HETATM 6 C C4 PGE . . . D 4 4.483 -2.667 11.953 1 56.19 ? C4 PGE 303 A 1 HETATM 7 O O4 PGE . . . D 4 0.022 -2.828 13.537 1 58.34 ? O4 PGE 303 A 1 HETATM 8 C C6 PGE . . . D 4 1.172 -1.972 13.486 1 58.39 ? C6 PGE 303 A 1 HETATM 9 C C5 PGE . . . D 4 2.183 -2.547 12.501 1 57.79 ? C5 PGE 303 A 1 HETATM 10 O O3 PGE . . . D 4 3.484 -2.012 12.739 1 57.25 ? O3 PGE 303 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 10 #