data_4GY2 # _model_server_result.job_id aeqRq-HZEozhiO92YwuXUg _model_server_result.datetime_utc '2024-11-16 08:33:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gy2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":402}' # _entry.id 4GY2 # _exptl.entry_id 4GY2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4GY2 _cell.length_a 54.442 _cell.length_b 135.872 _cell.length_c 153.946 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GY2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 4GY2 _atom_sites.fract_transf_matrix[1][1] 0.018368 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00736 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006496 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PO4 A 1 600 600 PO4 PO4 . D 4 CA B 1 401 400 CA CA . E 5 ATP B 1 402 500 ATP ATP . F 6 LAR B 1 403 600 LAR LAR . G 7 HOH A 1 701 1 HOH HOH . G 7 HOH A 2 702 2 HOH HOH . G 7 HOH A 3 703 3 HOH HOH . G 7 HOH A 4 704 4 HOH HOH . G 7 HOH A 5 705 5 HOH HOH . G 7 HOH A 6 706 6 HOH HOH . G 7 HOH A 7 707 7 HOH HOH . G 7 HOH A 8 708 8 HOH HOH . G 7 HOH A 9 709 9 HOH HOH . G 7 HOH A 10 710 10 HOH HOH . G 7 HOH A 11 711 11 HOH HOH . G 7 HOH A 12 712 12 HOH HOH . G 7 HOH A 13 713 13 HOH HOH . G 7 HOH A 14 714 14 HOH HOH . G 7 HOH A 15 715 15 HOH HOH . G 7 HOH A 16 716 16 HOH HOH . G 7 HOH A 17 717 17 HOH HOH . G 7 HOH A 18 718 18 HOH HOH . G 7 HOH A 19 719 19 HOH HOH . G 7 HOH A 20 720 20 HOH HOH . G 7 HOH A 21 721 21 HOH HOH . G 7 HOH A 22 722 22 HOH HOH . G 7 HOH A 23 723 23 HOH HOH . G 7 HOH A 24 724 24 HOH HOH . G 7 HOH A 25 725 25 HOH HOH . G 7 HOH A 26 726 26 HOH HOH . G 7 HOH A 27 727 27 HOH HOH . G 7 HOH A 28 728 28 HOH HOH . G 7 HOH A 29 729 29 HOH HOH . G 7 HOH A 30 730 30 HOH HOH . G 7 HOH A 31 731 31 HOH HOH . G 7 HOH A 32 732 32 HOH HOH . G 7 HOH A 33 733 33 HOH HOH . G 7 HOH A 34 734 43 HOH HOH . G 7 HOH A 35 735 54 HOH HOH . G 7 HOH A 36 736 55 HOH HOH . G 7 HOH A 37 737 56 HOH HOH . G 7 HOH A 38 738 57 HOH HOH . G 7 HOH A 39 739 58 HOH HOH . G 7 HOH A 40 740 59 HOH HOH . G 7 HOH A 41 741 60 HOH HOH . G 7 HOH A 42 742 61 HOH HOH . G 7 HOH A 43 743 62 HOH HOH . G 7 HOH A 44 744 63 HOH HOH . G 7 HOH A 45 745 64 HOH HOH . G 7 HOH A 46 746 65 HOH HOH . G 7 HOH A 47 747 66 HOH HOH . G 7 HOH A 48 748 67 HOH HOH . G 7 HOH A 49 749 68 HOH HOH . G 7 HOH A 50 750 69 HOH HOH . G 7 HOH A 51 751 70 HOH HOH . G 7 HOH A 52 752 72 HOH HOH . G 7 HOH A 53 753 73 HOH HOH . G 7 HOH A 54 754 74 HOH HOH . G 7 HOH A 55 755 75 HOH HOH . G 7 HOH A 56 756 76 HOH HOH . G 7 HOH A 57 757 77 HOH HOH . G 7 HOH A 58 758 82 HOH HOH . G 7 HOH A 59 759 83 HOH HOH . G 7 HOH A 60 760 84 HOH HOH . G 7 HOH A 61 761 85 HOH HOH . G 7 HOH A 62 762 86 HOH HOH . G 7 HOH A 63 763 87 HOH HOH . G 7 HOH A 64 764 88 HOH HOH . G 7 HOH A 65 765 89 HOH HOH . G 7 HOH A 66 766 90 HOH HOH . G 7 HOH A 67 767 91 HOH HOH . G 7 HOH A 68 768 92 HOH HOH . G 7 HOH A 69 769 93 HOH HOH . G 7 HOH A 70 770 94 HOH HOH . G 7 HOH A 71 771 109 HOH HOH . G 7 HOH A 72 772 110 HOH HOH . G 7 HOH A 73 773 119 HOH HOH . G 7 HOH A 74 774 120 HOH HOH . G 7 HOH A 75 775 121 HOH HOH . G 7 HOH A 76 776 122 HOH HOH . G 7 HOH A 77 777 123 HOH HOH . G 7 HOH A 78 778 124 HOH HOH . G 7 HOH A 79 779 125 HOH HOH . G 7 HOH A 80 780 126 HOH HOH . G 7 HOH A 81 781 127 HOH HOH . G 7 HOH A 82 782 128 HOH HOH . G 7 HOH A 83 783 129 HOH HOH . G 7 HOH A 84 784 130 HOH HOH . G 7 HOH A 85 785 135 HOH HOH . G 7 HOH A 86 786 136 HOH HOH . G 7 HOH A 87 787 137 HOH HOH . G 7 HOH A 88 788 138 HOH HOH . G 7 HOH A 89 789 143 HOH HOH . H 7 HOH B 1 501 34 HOH HOH . H 7 HOH B 2 502 35 HOH HOH . H 7 HOH B 3 503 36 HOH HOH . H 7 HOH B 4 504 37 HOH HOH . H 7 HOH B 5 505 38 HOH HOH . H 7 HOH B 6 506 39 HOH HOH . H 7 HOH B 7 507 40 HOH HOH . H 7 HOH B 8 508 41 HOH HOH . H 7 HOH B 9 509 42 HOH HOH . H 7 HOH B 10 510 44 HOH HOH . H 7 HOH B 11 511 45 HOH HOH . H 7 HOH B 12 512 46 HOH HOH . H 7 HOH B 13 513 47 HOH HOH . H 7 HOH B 14 514 48 HOH HOH . H 7 HOH B 15 515 49 HOH HOH . H 7 HOH B 16 516 50 HOH HOH . H 7 HOH B 17 517 51 HOH HOH . H 7 HOH B 18 518 52 HOH HOH . H 7 HOH B 19 519 53 HOH HOH . H 7 HOH B 20 520 71 HOH HOH . H 7 HOH B 21 521 78 HOH HOH . H 7 HOH B 22 522 79 HOH HOH . H 7 HOH B 23 523 80 HOH HOH . H 7 HOH B 24 524 81 HOH HOH . H 7 HOH B 25 525 95 HOH HOH . H 7 HOH B 26 526 96 HOH HOH . H 7 HOH B 27 527 97 HOH HOH . H 7 HOH B 28 528 98 HOH HOH . H 7 HOH B 29 529 99 HOH HOH . H 7 HOH B 30 530 100 HOH HOH . H 7 HOH B 31 531 101 HOH HOH . H 7 HOH B 32 532 102 HOH HOH . H 7 HOH B 33 533 103 HOH HOH . H 7 HOH B 34 534 104 HOH HOH . H 7 HOH B 35 535 105 HOH HOH . H 7 HOH B 36 536 106 HOH HOH . H 7 HOH B 37 537 107 HOH HOH . H 7 HOH B 38 538 108 HOH HOH . H 7 HOH B 39 539 111 HOH HOH . H 7 HOH B 40 540 112 HOH HOH . H 7 HOH B 41 541 113 HOH HOH . H 7 HOH B 42 542 114 HOH HOH . H 7 HOH B 43 543 115 HOH HOH . H 7 HOH B 44 544 116 HOH HOH . H 7 HOH B 45 545 117 HOH HOH . H 7 HOH B 46 546 118 HOH HOH . H 7 HOH B 47 547 131 HOH HOH . H 7 HOH B 48 548 132 HOH HOH . H 7 HOH B 49 549 133 HOH HOH . H 7 HOH B 50 550 134 HOH HOH . H 7 HOH B 51 551 139 HOH HOH . H 7 HOH B 52 552 140 HOH HOH . H 7 HOH B 53 553 141 HOH HOH . H 7 HOH B 54 554 142 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . E 5 -1.967 -32.587 24.88 1 22.37 ? PG ATP 402 B 1 HETATM 2 O O1G ATP . . . E 5 -1.932 -31.431 23.914 1 24.88 ? O1G ATP 402 B 1 HETATM 3 O O2G ATP . . . E 5 -3.319 -33.24 24.717 1 23.63 ? O2G ATP 402 B 1 HETATM 4 O O3G ATP . . . E 5 -1.577 -32.281 26.319 1 21.56 ? O3G ATP 402 B 1 HETATM 5 P PB ATP . . . E 5 -0.786 -34.769 23.395 1 17.97 ? PB ATP 402 B 1 HETATM 6 O O1B ATP . . . E 5 -1.95 -34.664 22.446 1 18.32 ? O1B ATP 402 B 1 HETATM 7 O O2B ATP . . . E 5 0.565 -34.902 22.794 1 19.75 ? O2B ATP 402 B 1 HETATM 8 O O3B ATP . . . E 5 -0.731 -33.491 24.335 1 19.45 ? O3B ATP 402 B 1 HETATM 9 P PA ATP . . . E 5 -1.31 -37.438 24.138 1 16.89 ? PA ATP 402 B 1 HETATM 10 O O1A ATP . . . E 5 -0.717 -37.667 22.794 1 16.34 ? O1A ATP 402 B 1 HETATM 11 O O2A ATP . . . E 5 -2.761 -37.749 24.367 1 16.14 ? O2A ATP 402 B 1 HETATM 12 O O3A ATP . . . E 5 -0.954 -35.914 24.484 1 17.29 ? O3A ATP 402 B 1 HETATM 13 O O5' ATP . . . E 5 -0.5 -38.275 25.278 1 16.59 ? O5' ATP 402 B 1 HETATM 14 C C5' ATP . . . E 5 0.892 -37.984 25.537 1 17.22 ? C5' ATP 402 B 1 HETATM 15 C C4' ATP . . . E 5 1.205 -38.178 27 1 17.2 ? C4' ATP 402 B 1 HETATM 16 O O4' ATP . . . E 5 0.634 -39.437 27.351 1 17.66 ? O4' ATP 402 B 1 HETATM 17 C C3' ATP . . . E 5 2.661 -38.278 27.375 1 17.69 ? C3' ATP 402 B 1 HETATM 18 O O3' ATP . . . E 5 2.857 -37.599 28.622 1 18.28 ? O3' ATP 402 B 1 HETATM 19 C C2' ATP . . . E 5 2.818 -39.752 27.708 1 18.79 ? C2' ATP 402 B 1 HETATM 20 O O2' ATP . . . E 5 3.823 -40.018 28.679 1 19.15 ? O2' ATP 402 B 1 HETATM 21 C C1' ATP . . . E 5 1.466 -40.128 28.247 1 17.78 ? C1' ATP 402 B 1 HETATM 22 N N9 ATP . . . E 5 1.232 -41.562 28.087 1 17.74 ? N9 ATP 402 B 1 HETATM 23 C C8 ATP . . . E 5 1.204 -42.305 26.966 1 18.32 ? C8 ATP 402 B 1 HETATM 24 N N7 ATP . . . E 5 0.92 -43.622 27.212 1 17.59 ? N7 ATP 402 B 1 HETATM 25 C C5 ATP . . . E 5 0.779 -43.708 28.534 1 17.01 ? C5 ATP 402 B 1 HETATM 26 C C6 ATP . . . E 5 0.497 -44.763 29.486 1 16.76 ? C6 ATP 402 B 1 HETATM 27 N N6 ATP . . . E 5 0.315 -46.027 29.127 1 15.6 ? N6 ATP 402 B 1 HETATM 28 N N1 ATP . . . E 5 0.432 -44.414 30.779 1 18.68 ? N1 ATP 402 B 1 HETATM 29 C C2 ATP . . . E 5 0.62 -43.148 31.212 1 18.06 ? C2 ATP 402 B 1 HETATM 30 N N3 ATP . . . E 5 0.905 -42.135 30.396 1 17.27 ? N3 ATP 402 B 1 HETATM 31 C C4 ATP . . . E 5 0.987 -42.362 29.088 1 17.43 ? C4 ATP 402 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #