data_4GYB
#
_model_server_result.job_id            5Bfn2QI2Tq93-yzXJY-vlg 
_model_server_result.datetime_utc      '2024-10-19 11:50:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4gyb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":408}' 
#
_entry.id    4GYB 
#
_exptl.entry_id    4GYB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              150.173 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'TRIETHYLENE GLYCOL' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4GYB 
_cell.length_a            177.54 
_cell.length_b            177.54 
_cell.length_c            177.54 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4GYB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        212 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 
3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 I N N 
? 6 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O GLU 80 A GLU 80 1_555 F NA NA . A NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? 
metalc ? metalc2 A ND1 HIS 231 A HIS 231 1_555 B CU CU . A CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
metalc ? metalc3 A NE2 HIS 234 A HIS 234 1_555 E CU CU . A CU 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? 
metalc ? metalc4 A NE2 HIS 236 A HIS 236 1_555 D CU CU . A CU 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
metalc ? metalc5 A NE2 HIS 287 A HIS 287 1_555 D CU CU . A CU 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? 
metalc ? metalc6 A SG CYS 288 A CYS 288 1_555 B CU CU . A CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? 
metalc ? metalc7 A NE2 HIS 289 A HIS 289 1_555 C CU CU . A CU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? 
metalc ? metalc8 A ND1 HIS 293 A HIS 293 1_555 B CU CU . A CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? 
metalc ? metalc9 D CU CU . A CU 403 1_555 L O HOH . A HOH 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? 
metalc ? metalc10 F NA NA . A NA 405 1_555 J O4 PGE . A PGE 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? 
metalc ? metalc11 F NA NA . A NA 405 1_555 J O3 PGE . A PGE 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.811 ? 
metalc ? metalc12 F NA NA . A NA 405 1_555 J O1 PGE . A PGE 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.931 ? 
metalc ? metalc13 F NA NA . A NA 405 1_555 J O2 PGE . A PGE 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.017 ? 
metalc ? metalc14 F NA NA . A NA 405 1_555 L O HOH . A HOH 653 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.821 ? 
metalc ? metalc15 F NA NA . A NA 405 1_555 L O HOH . A HOH 654 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? 
#
_chem_comp.formula           'C6 H14 O4' 
_chem_comp.formula_weight    150.173 
_chem_comp.id                PGE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'TRIETHYLENE GLYCOL' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PGE sing 267 n n 
C1 C2 PGE sing 268 n n 
C1 H1 PGE sing 269 n n 
C1 H12 PGE sing 270 n n 
O1 HO1 PGE sing 271 n n 
C2 O2 PGE sing 272 n n 
C2 H2 PGE sing 273 n n 
C2 H22 PGE sing 274 n n 
O2 C3 PGE sing 275 n n 
C3 C4 PGE sing 276 n n 
C3 H3 PGE sing 277 n n 
C3 H32 PGE sing 278 n n 
C4 O3 PGE sing 279 n n 
C4 H4 PGE sing 280 n n 
C4 H42 PGE sing 281 n n 
O4 C6 PGE sing 282 n n 
O4 HO4 PGE sing 283 n n 
C6 C5 PGE sing 284 n n 
C6 H6 PGE sing 285 n n 
C6 H62 PGE sing 286 n n 
C5 O3 PGE sing 287 n n 
C5 H5 PGE sing 288 n n 
C5 H52 PGE sing 289 n n 
#
_atom_sites.entry_id                     4GYB 
_atom_sites.fract_transf_matrix[1][1]    0.005633 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005633 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005633 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CU A 1 401 401 CU CU . 
C 2 CU A 1 402 402 CU CU . 
D 2 CU A 1 403 403 CU CU . 
E 2 CU A 1 404 404 CU CU . 
F 3 NA A 1 405 501 NA NA . 
G 4 CL A 1 406 502 CL CL . 
H 5 PG4 A 1 407 610 PG4 PG4 . 
I 6 PGE A 1 408 611 PGE PGE . 
J 6 PGE A 1 409 612 PGE PGE . 
K 5 PG4 A 1 410 614 PG4 PG4 . 
L 7 HOH A 1 501 1 HOH HOH . 
L 7 HOH A 2 502 2 HOH HOH . 
L 7 HOH A 3 503 3 HOH HOH . 
L 7 HOH A 4 504 4 HOH HOH . 
L 7 HOH A 5 505 5 HOH HOH . 
L 7 HOH A 6 506 7 HOH HOH . 
L 7 HOH A 7 507 8 HOH HOH . 
L 7 HOH A 8 508 9 HOH HOH . 
L 7 HOH A 9 509 10 HOH HOH . 
L 7 HOH A 10 510 11 HOH HOH . 
L 7 HOH A 11 511 12 HOH HOH . 
L 7 HOH A 12 512 13 HOH HOH . 
L 7 HOH A 13 513 14 HOH HOH . 
L 7 HOH A 14 514 15 HOH HOH . 
L 7 HOH A 15 515 16 HOH HOH . 
L 7 HOH A 16 516 17 HOH HOH . 
L 7 HOH A 17 517 18 HOH HOH . 
L 7 HOH A 18 518 19 HOH HOH . 
L 7 HOH A 19 519 20 HOH HOH . 
L 7 HOH A 20 520 21 HOH HOH . 
L 7 HOH A 21 521 22 HOH HOH . 
L 7 HOH A 22 522 23 HOH HOH . 
L 7 HOH A 23 523 24 HOH HOH . 
L 7 HOH A 24 524 25 HOH HOH . 
L 7 HOH A 25 525 26 HOH HOH . 
L 7 HOH A 26 526 27 HOH HOH . 
L 7 HOH A 27 527 28 HOH HOH . 
L 7 HOH A 28 528 29 HOH HOH . 
L 7 HOH A 29 529 30 HOH HOH . 
L 7 HOH A 30 530 31 HOH HOH . 
L 7 HOH A 31 531 32 HOH HOH . 
L 7 HOH A 32 532 33 HOH HOH . 
L 7 HOH A 33 533 34 HOH HOH . 
L 7 HOH A 34 534 35 HOH HOH . 
L 7 HOH A 35 535 36 HOH HOH . 
L 7 HOH A 36 536 37 HOH HOH . 
L 7 HOH A 37 537 38 HOH HOH . 
L 7 HOH A 38 538 39 HOH HOH . 
L 7 HOH A 39 539 40 HOH HOH . 
L 7 HOH A 40 540 41 HOH HOH . 
L 7 HOH A 41 541 42 HOH HOH . 
L 7 HOH A 42 542 43 HOH HOH . 
L 7 HOH A 43 543 44 HOH HOH . 
L 7 HOH A 44 544 45 HOH HOH . 
L 7 HOH A 45 545 46 HOH HOH . 
L 7 HOH A 46 546 48 HOH HOH . 
L 7 HOH A 47 547 49 HOH HOH . 
L 7 HOH A 48 548 50 HOH HOH . 
L 7 HOH A 49 549 51 HOH HOH . 
L 7 HOH A 50 550 52 HOH HOH . 
L 7 HOH A 51 551 53 HOH HOH . 
L 7 HOH A 52 552 54 HOH HOH . 
L 7 HOH A 53 553 55 HOH HOH . 
L 7 HOH A 54 554 56 HOH HOH . 
L 7 HOH A 55 555 57 HOH HOH . 
L 7 HOH A 56 556 58 HOH HOH . 
L 7 HOH A 57 557 59 HOH HOH . 
L 7 HOH A 58 558 60 HOH HOH . 
L 7 HOH A 59 559 61 HOH HOH . 
L 7 HOH A 60 560 62 HOH HOH . 
L 7 HOH A 61 561 63 HOH HOH . 
L 7 HOH A 62 562 64 HOH HOH . 
L 7 HOH A 63 563 65 HOH HOH . 
L 7 HOH A 64 564 66 HOH HOH . 
L 7 HOH A 65 565 67 HOH HOH . 
L 7 HOH A 66 566 68 HOH HOH . 
L 7 HOH A 67 567 70 HOH HOH . 
L 7 HOH A 68 568 71 HOH HOH . 
L 7 HOH A 69 569 72 HOH HOH . 
L 7 HOH A 70 570 73 HOH HOH . 
L 7 HOH A 71 571 74 HOH HOH . 
L 7 HOH A 72 572 75 HOH HOH . 
L 7 HOH A 73 573 76 HOH HOH . 
L 7 HOH A 74 574 77 HOH HOH . 
L 7 HOH A 75 575 78 HOH HOH . 
L 7 HOH A 76 576 79 HOH HOH . 
L 7 HOH A 77 577 80 HOH HOH . 
L 7 HOH A 78 578 81 HOH HOH . 
L 7 HOH A 79 579 82 HOH HOH . 
L 7 HOH A 80 580 83 HOH HOH . 
L 7 HOH A 81 581 84 HOH HOH . 
L 7 HOH A 82 582 85 HOH HOH . 
L 7 HOH A 83 583 86 HOH HOH . 
L 7 HOH A 84 584 87 HOH HOH . 
L 7 HOH A 85 585 88 HOH HOH . 
L 7 HOH A 86 586 89 HOH HOH . 
L 7 HOH A 87 587 90 HOH HOH . 
L 7 HOH A 88 588 91 HOH HOH . 
L 7 HOH A 89 589 92 HOH HOH . 
L 7 HOH A 90 590 93 HOH HOH . 
L 7 HOH A 91 591 94 HOH HOH . 
L 7 HOH A 92 592 95 HOH HOH . 
L 7 HOH A 93 593 96 HOH HOH . 
L 7 HOH A 94 594 97 HOH HOH . 
L 7 HOH A 95 595 98 HOH HOH . 
L 7 HOH A 96 596 99 HOH HOH . 
L 7 HOH A 97 597 100 HOH HOH . 
L 7 HOH A 98 598 101 HOH HOH . 
L 7 HOH A 99 599 102 HOH HOH . 
L 7 HOH A 100 600 103 HOH HOH . 
L 7 HOH A 101 601 104 HOH HOH . 
L 7 HOH A 102 602 105 HOH HOH . 
L 7 HOH A 103 603 106 HOH HOH . 
L 7 HOH A 104 604 107 HOH HOH . 
L 7 HOH A 105 605 108 HOH HOH . 
L 7 HOH A 106 606 109 HOH HOH . 
L 7 HOH A 107 607 110 HOH HOH . 
L 7 HOH A 108 608 111 HOH HOH . 
L 7 HOH A 109 609 112 HOH HOH . 
L 7 HOH A 110 610 113 HOH HOH . 
L 7 HOH A 111 611 114 HOH HOH . 
L 7 HOH A 112 612 116 HOH HOH . 
L 7 HOH A 113 613 117 HOH HOH . 
L 7 HOH A 114 614 118 HOH HOH . 
L 7 HOH A 115 615 119 HOH HOH . 
L 7 HOH A 116 616 120 HOH HOH . 
L 7 HOH A 117 617 121 HOH HOH . 
L 7 HOH A 118 618 122 HOH HOH . 
L 7 HOH A 119 619 123 HOH HOH . 
L 7 HOH A 120 620 124 HOH HOH . 
L 7 HOH A 121 621 125 HOH HOH . 
L 7 HOH A 122 622 126 HOH HOH . 
L 7 HOH A 123 623 127 HOH HOH . 
L 7 HOH A 124 624 128 HOH HOH . 
L 7 HOH A 125 625 130 HOH HOH . 
L 7 HOH A 126 626 131 HOH HOH . 
L 7 HOH A 127 627 132 HOH HOH . 
L 7 HOH A 128 628 133 HOH HOH . 
L 7 HOH A 129 629 134 HOH HOH . 
L 7 HOH A 130 630 135 HOH HOH . 
L 7 HOH A 131 631 136 HOH HOH . 
L 7 HOH A 132 632 137 HOH HOH . 
L 7 HOH A 133 633 138 HOH HOH . 
L 7 HOH A 134 634 139 HOH HOH . 
L 7 HOH A 135 635 140 HOH HOH . 
L 7 HOH A 136 636 141 HOH HOH . 
L 7 HOH A 137 637 142 HOH HOH . 
L 7 HOH A 138 638 143 HOH HOH . 
L 7 HOH A 139 639 144 HOH HOH . 
L 7 HOH A 140 640 145 HOH HOH . 
L 7 HOH A 141 641 146 HOH HOH . 
L 7 HOH A 142 642 147 HOH HOH . 
L 7 HOH A 143 643 148 HOH HOH . 
L 7 HOH A 144 644 149 HOH HOH . 
L 7 HOH A 145 645 150 HOH HOH . 
L 7 HOH A 146 646 151 HOH HOH . 
L 7 HOH A 147 647 152 HOH HOH . 
L 7 HOH A 148 648 153 HOH HOH . 
L 7 HOH A 149 649 154 HOH HOH . 
L 7 HOH A 150 650 155 HOH HOH . 
L 7 HOH A 151 651 156 HOH HOH . 
L 7 HOH A 152 652 157 HOH HOH . 
L 7 HOH A 153 653 158 HOH HOH . 
L 7 HOH A 154 654 159 HOH HOH . 
L 7 HOH A 155 655 160 HOH HOH . 
L 7 HOH A 156 656 161 HOH HOH . 
L 7 HOH A 157 657 162 HOH HOH . 
L 7 HOH A 158 658 163 HOH HOH . 
L 7 HOH A 159 659 164 HOH HOH . 
L 7 HOH A 160 660 165 HOH HOH . 
L 7 HOH A 161 661 166 HOH HOH . 
L 7 HOH A 162 662 167 HOH HOH . 
L 7 HOH A 163 663 168 HOH HOH . 
L 7 HOH A 164 664 169 HOH HOH . 
L 7 HOH A 165 665 170 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PGE . . . I 6 -53.695 -24.367 -44.311 1 64.7 ? C1 PGE 408 A 1 
HETATM 2 O O1 PGE . . . I 6 -53.425 -23.504 -43.192 1 60.94 ? O1 PGE 408 A 1 
HETATM 3 C C2 PGE . . . I 6 -52.51 -24.393 -45.285 1 57.88 ? C2 PGE 408 A 1 
HETATM 4 O O2 PGE . . . I 6 -52.135 -23.066 -45.663 1 57.27 ? O2 PGE 408 A 1 
HETATM 5 C C3 PGE . . . I 6 -51.446 -23.034 -46.914 1 54.41 ? C3 PGE 408 A 1 
HETATM 6 C C4 PGE . . . I 6 -51.57 -21.636 -47.534 1 62.98 ? C4 PGE 408 A 1 
HETATM 7 O O4 PGE . . . I 6 -51.959 -17.466 -45.386 1 59.85 ? O4 PGE 408 A 1 
HETATM 8 C C6 PGE . . . I 6 -50.949 -18.402 -45.8 1 57.36 ? C6 PGE 408 A 1 
HETATM 9 C C5 PGE . . . I 6 -51.5 -19.355 -46.862 1 67.16 ? C5 PGE 408 A 1 
HETATM 10 O O3 PGE . . . I 6 -50.87 -20.641 -46.772 1 68.27 ? O3 PGE 408 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           342 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           10 
#