data_4GYC
#
_model_server_result.job_id            9ZmdKWj3WIxPEyXFYCUSUA 
_model_server_result.datetime_utc      '2024-11-24 14:00:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4gyc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    4GYC 
#
_exptl.entry_id    4GYC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              284.436 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            RETINAL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4GYC 
_cell.length_a            49.465 
_cell.length_b            113.674 
_cell.length_c            126.185 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4GYC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        24 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_556 -x+1/2,y,-z+1 -1 0 0 0 1 0 0 0 -1 24.7325 0 126.185 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            NZ 
_struct_conn.ptnr1_label_comp_id            LYS 
_struct_conn.ptnr1_label_seq_id             205 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             LYS 
_struct_conn.ptnr1_auth_seq_id              205 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            C 
_struct_conn.ptnr2_label_atom_id            C15 
_struct_conn.ptnr2_label_comp_id            RET 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             RET 
_struct_conn.ptnr2_auth_seq_id              301 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.336 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C20 H28 O' 
_chem_comp.formula_weight    284.436 
_chem_comp.id                RET 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              RETINAL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 RET sing 325 n n 
C1 C6 RET sing 326 n n 
C1 C16 RET sing 327 n n 
C1 C17 RET sing 328 n n 
C2 C3 RET sing 329 n n 
C2 H21 RET sing 330 n n 
C2 H22 RET sing 331 n n 
C3 C4 RET sing 332 n n 
C3 H31 RET sing 333 n n 
C3 H32 RET sing 334 n n 
C4 C5 RET sing 335 n n 
C4 H41 RET sing 336 n n 
C4 H42 RET sing 337 n n 
C5 C6 RET doub 338 n n 
C5 C18 RET sing 339 n n 
C6 C7 RET sing 340 n n 
C7 C8 RET doub 341 e n 
C7 H7 RET sing 342 n n 
C8 C9 RET sing 343 n n 
C8 H8 RET sing 344 n n 
C9 C10 RET doub 345 e n 
C9 C19 RET sing 346 n n 
C10 C11 RET sing 347 n n 
C10 H10 RET sing 348 n n 
C11 C12 RET doub 349 e n 
C11 H11 RET sing 350 n n 
C12 C13 RET sing 351 n n 
C12 H12 RET sing 352 n n 
C13 C14 RET doub 353 e n 
C13 C20 RET sing 354 n n 
C14 C15 RET sing 355 n n 
C14 H14 RET sing 356 n n 
C15 O1 RET doub 357 n n 
C15 H15 RET sing 358 n n 
C16 H161 RET sing 359 n n 
C16 H162 RET sing 360 n n 
C16 H163 RET sing 361 n n 
C17 H171 RET sing 362 n n 
C17 H172 RET sing 363 n n 
C17 H173 RET sing 364 n n 
C18 H181 RET sing 365 n n 
C18 H182 RET sing 366 n n 
C18 H183 RET sing 367 n n 
C19 H191 RET sing 368 n n 
C19 H192 RET sing 369 n n 
C19 H193 RET sing 370 n n 
C20 H201 RET sing 371 n n 
C20 H202 RET sing 372 n n 
C20 H203 RET sing 373 n n 
#
_atom_sites.entry_id                     4GYC 
_atom_sites.fract_transf_matrix[1][1]    0.020216 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008797 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007925 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 RET A 1 301 305 RET RET . 
D 4 LFA A 1 302 1 LFA LFA . 
E 4 LFA A 1 303 2 LFA LFA . 
F 4 LFA A 1 304 3 LFA LFA . 
G 4 LFA A 1 305 4 LFA LFA . 
H 4 LFA A 1 306 5 LFA LFA . 
I 4 LFA A 1 307 6 LFA LFA . 
J 4 LFA A 1 308 7 LFA LFA . 
K 4 LFA A 1 309 8 LFA LFA . 
L 4 LFA A 1 310 9 LFA LFA . 
M 5 HOH A 1 401 1 HOH HOH . 
M 5 HOH A 2 402 2 HOH HOH . 
M 5 HOH A 3 403 3 HOH HOH . 
M 5 HOH A 4 404 4 HOH HOH . 
M 5 HOH A 5 405 6 HOH HOH . 
M 5 HOH A 6 406 7 HOH HOH . 
M 5 HOH A 7 407 8 HOH HOH . 
M 5 HOH A 8 408 9 HOH HOH . 
M 5 HOH A 9 409 10 HOH HOH . 
M 5 HOH A 10 410 12 HOH HOH . 
M 5 HOH A 11 411 14 HOH HOH . 
M 5 HOH A 12 412 15 HOH HOH . 
M 5 HOH A 13 413 16 HOH HOH . 
M 5 HOH A 14 414 17 HOH HOH . 
M 5 HOH A 15 415 18 HOH HOH . 
M 5 HOH A 16 416 19 HOH HOH . 
M 5 HOH A 17 417 20 HOH HOH . 
M 5 HOH A 18 418 21 HOH HOH . 
M 5 HOH A 19 419 23 HOH HOH . 
M 5 HOH A 20 420 24 HOH HOH . 
M 5 HOH A 21 421 25 HOH HOH . 
M 5 HOH A 22 422 26 HOH HOH . 
M 5 HOH A 23 423 27 HOH HOH . 
M 5 HOH A 24 424 29 HOH HOH . 
M 5 HOH A 25 425 30 HOH HOH . 
M 5 HOH A 26 426 32 HOH HOH . 
M 5 HOH A 27 427 33 HOH HOH . 
M 5 HOH A 28 428 34 HOH HOH . 
M 5 HOH A 29 429 35 HOH HOH . 
M 5 HOH A 30 430 38 HOH HOH . 
M 5 HOH A 31 431 39 HOH HOH . 
M 5 HOH A 32 432 41 HOH HOH . 
M 5 HOH A 33 433 46 HOH HOH . 
M 5 HOH A 34 434 48 HOH HOH . 
M 5 HOH A 35 435 49 HOH HOH . 
M 5 HOH A 36 436 51 HOH HOH . 
M 5 HOH A 37 437 52 HOH HOH . 
M 5 HOH A 38 438 53 HOH HOH . 
M 5 HOH A 39 439 55 HOH HOH . 
M 5 HOH A 40 440 56 HOH HOH . 
M 5 HOH A 41 441 57 HOH HOH . 
M 5 HOH A 42 442 58 HOH HOH . 
M 5 HOH A 43 443 61 HOH HOH . 
M 5 HOH A 44 444 63 HOH HOH . 
M 5 HOH A 45 445 64 HOH HOH . 
M 5 HOH A 46 446 65 HOH HOH . 
M 5 HOH A 47 447 66 HOH HOH . 
M 5 HOH A 48 448 68 HOH HOH . 
M 5 HOH A 49 449 69 HOH HOH . 
M 5 HOH A 50 450 70 HOH HOH . 
M 5 HOH A 51 451 73 HOH HOH . 
N 5 HOH B 1 201 5 HOH HOH . 
N 5 HOH B 2 202 11 HOH HOH . 
N 5 HOH B 3 203 22 HOH HOH . 
N 5 HOH B 4 204 36 HOH HOH . 
N 5 HOH B 5 205 37 HOH HOH . 
N 5 HOH B 6 206 40 HOH HOH . 
N 5 HOH B 7 207 62 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 RET . . . C 3 -6.836 5.384 51.196 1 18.49 ? C1 RET 301 A 1 
HETATM 2 C C2 RET . . . C 3 -7.795 6.397 51.895 1 15.99 ? C2 RET 301 A 1 
HETATM 3 C C3 RET . . . C 3 -9.077 5.772 52.386 1 14.15 ? C3 RET 301 A 1 
HETATM 4 C C4 RET . . . C 3 -8.701 4.73 53.464 1 18.92 ? C4 RET 301 A 1 
HETATM 5 C C5 RET . . . C 3 -7.623 3.735 53.036 1 10.59 ? C5 RET 301 A 1 
HETATM 6 C C6 RET . . . C 3 -6.826 4.034 51.979 1 8.51 ? C6 RET 301 A 1 
HETATM 7 C C7 RET . . . C 3 -5.865 2.956 51.634 1 7.34 ? C7 RET 301 A 1 
HETATM 8 C C8 RET . . . C 3 -4.959 2.898 50.616 1 8.67 ? C8 RET 301 A 1 
HETATM 9 C C9 RET . . . C 3 -4.054 1.802 50.26 1 9.82 ? C9 RET 301 A 1 
HETATM 10 C C10 RET . . . C 3 -3.161 1.936 49.214 1 7.12 ? C10 RET 301 A 1 
HETATM 11 C C11 RET . . . C 3 -2.221 0.88 48.816 1 8.16 ? C11 RET 301 A 1 
HETATM 12 C C12 RET . . . C 3 -1.561 1.22 47.618 1 5.6 ? C12 RET 301 A 1 
HETATM 13 C C13 RET . . . C 3 -0.612 0.242 47.115 1 10.37 ? C13 RET 301 A 1 
HETATM 14 C C14 RET . . . C 3 -0.067 0.59 45.903 1 12.41 ? C14 RET 301 A 1 
HETATM 15 C C15 RET . . . C 3 0.877 -0.177 45.094 1 12.41 ? C15 RET 301 A 1 
HETATM 16 C C16 RET . . . C 3 -7.172 5.106 49.632 1 11.54 ? C16 RET 301 A 1 
HETATM 17 C C17 RET . . . C 3 -5.434 6.146 51.229 1 10.01 ? C17 RET 301 A 1 
HETATM 18 C C18 RET . . . C 3 -7.641 2.462 53.865 1 11.26 ? C18 RET 301 A 1 
HETATM 19 C C19 RET . . . C 3 -4.092 0.599 51.119 1 3.49 ? C19 RET 301 A 1 
HETATM 20 C C20 RET . . . C 3 -0.387 -1.089 47.766 1 7.09 ? C20 RET 301 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           213 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           20 
#