data_4GYC
#
_model_server_result.job_id            d2ALjZKlTPLD-qjCfGSYyA 
_model_server_result.datetime_utc      '2024-11-14 23:41:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4gyc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":303}' 
#
_entry.id    4GYC 
#
_exptl.entry_id    4GYC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              282.547 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            EICOSANE 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4GYC 
_cell.length_a            49.465 
_cell.length_b            113.674 
_cell.length_c            126.185 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4GYC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        24 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_556 -x+1/2,y,-z+1 -1 0 0 0 1 0 0 0 -1 24.7325 0 126.185 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 K N N 
? 4 L N N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            NZ 
_struct_conn.ptnr1_label_comp_id            LYS 
_struct_conn.ptnr1_label_seq_id             205 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             LYS 
_struct_conn.ptnr1_auth_seq_id              205 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            C 
_struct_conn.ptnr2_label_atom_id            C15 
_struct_conn.ptnr2_label_comp_id            RET 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             RET 
_struct_conn.ptnr2_auth_seq_id              301 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.336 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C20 H42' 
_chem_comp.formula_weight    282.547 
_chem_comp.id                LFA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              EICOSANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'LIPID FRAGMENT' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 LFA sing 181 n n 
C1 H11 LFA sing 182 n n 
C1 H12 LFA sing 183 n n 
C1 H13 LFA sing 184 n n 
C2 C3 LFA sing 185 n n 
C2 H21 LFA sing 186 n n 
C2 H22 LFA sing 187 n n 
C3 C4 LFA sing 188 n n 
C3 H31 LFA sing 189 n n 
C3 H32 LFA sing 190 n n 
C4 C5 LFA sing 191 n n 
C4 H41 LFA sing 192 n n 
C4 H42 LFA sing 193 n n 
C5 C6 LFA sing 194 n n 
C5 H51 LFA sing 195 n n 
C5 H52 LFA sing 196 n n 
C6 C7 LFA sing 197 n n 
C6 H61 LFA sing 198 n n 
C6 H62 LFA sing 199 n n 
C7 C8 LFA sing 200 n n 
C7 H71 LFA sing 201 n n 
C7 H72 LFA sing 202 n n 
C8 C9 LFA sing 203 n n 
C8 H81 LFA sing 204 n n 
C8 H82 LFA sing 205 n n 
C9 C10 LFA sing 206 n n 
C9 H91 LFA sing 207 n n 
C9 H92 LFA sing 208 n n 
C10 C11 LFA sing 209 n n 
C10 H101 LFA sing 210 n n 
C10 H102 LFA sing 211 n n 
C11 C12 LFA sing 212 n n 
C11 H111 LFA sing 213 n n 
C11 H112 LFA sing 214 n n 
C12 C13 LFA sing 215 n n 
C12 H121 LFA sing 216 n n 
C12 H122 LFA sing 217 n n 
C13 C14 LFA sing 218 n n 
C13 H131 LFA sing 219 n n 
C13 H132 LFA sing 220 n n 
C14 C15 LFA sing 221 n n 
C14 H141 LFA sing 222 n n 
C14 H142 LFA sing 223 n n 
C15 C16 LFA sing 224 n n 
C15 H151 LFA sing 225 n n 
C15 H152 LFA sing 226 n n 
C16 C17 LFA sing 227 n n 
C16 H161 LFA sing 228 n n 
C16 H162 LFA sing 229 n n 
C17 C18 LFA sing 230 n n 
C17 H171 LFA sing 231 n n 
C17 H172 LFA sing 232 n n 
C18 C19 LFA sing 233 n n 
C18 H181 LFA sing 234 n n 
C18 H182 LFA sing 235 n n 
C19 C20 LFA sing 236 n n 
C19 H191 LFA sing 237 n n 
C19 H192 LFA sing 238 n n 
C20 H201 LFA sing 239 n n 
C20 H202 LFA sing 240 n n 
C20 H203 LFA sing 241 n n 
#
_atom_sites.entry_id                     4GYC 
_atom_sites.fract_transf_matrix[1][1]    0.020216 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008797 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007925 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 RET A 1 301 305 RET RET . 
D 4 LFA A 1 302 1 LFA LFA . 
E 4 LFA A 1 303 2 LFA LFA . 
F 4 LFA A 1 304 3 LFA LFA . 
G 4 LFA A 1 305 4 LFA LFA . 
H 4 LFA A 1 306 5 LFA LFA . 
I 4 LFA A 1 307 6 LFA LFA . 
J 4 LFA A 1 308 7 LFA LFA . 
K 4 LFA A 1 309 8 LFA LFA . 
L 4 LFA A 1 310 9 LFA LFA . 
M 5 HOH A 1 401 1 HOH HOH . 
M 5 HOH A 2 402 2 HOH HOH . 
M 5 HOH A 3 403 3 HOH HOH . 
M 5 HOH A 4 404 4 HOH HOH . 
M 5 HOH A 5 405 6 HOH HOH . 
M 5 HOH A 6 406 7 HOH HOH . 
M 5 HOH A 7 407 8 HOH HOH . 
M 5 HOH A 8 408 9 HOH HOH . 
M 5 HOH A 9 409 10 HOH HOH . 
M 5 HOH A 10 410 12 HOH HOH . 
M 5 HOH A 11 411 14 HOH HOH . 
M 5 HOH A 12 412 15 HOH HOH . 
M 5 HOH A 13 413 16 HOH HOH . 
M 5 HOH A 14 414 17 HOH HOH . 
M 5 HOH A 15 415 18 HOH HOH . 
M 5 HOH A 16 416 19 HOH HOH . 
M 5 HOH A 17 417 20 HOH HOH . 
M 5 HOH A 18 418 21 HOH HOH . 
M 5 HOH A 19 419 23 HOH HOH . 
M 5 HOH A 20 420 24 HOH HOH . 
M 5 HOH A 21 421 25 HOH HOH . 
M 5 HOH A 22 422 26 HOH HOH . 
M 5 HOH A 23 423 27 HOH HOH . 
M 5 HOH A 24 424 29 HOH HOH . 
M 5 HOH A 25 425 30 HOH HOH . 
M 5 HOH A 26 426 32 HOH HOH . 
M 5 HOH A 27 427 33 HOH HOH . 
M 5 HOH A 28 428 34 HOH HOH . 
M 5 HOH A 29 429 35 HOH HOH . 
M 5 HOH A 30 430 38 HOH HOH . 
M 5 HOH A 31 431 39 HOH HOH . 
M 5 HOH A 32 432 41 HOH HOH . 
M 5 HOH A 33 433 46 HOH HOH . 
M 5 HOH A 34 434 48 HOH HOH . 
M 5 HOH A 35 435 49 HOH HOH . 
M 5 HOH A 36 436 51 HOH HOH . 
M 5 HOH A 37 437 52 HOH HOH . 
M 5 HOH A 38 438 53 HOH HOH . 
M 5 HOH A 39 439 55 HOH HOH . 
M 5 HOH A 40 440 56 HOH HOH . 
M 5 HOH A 41 441 57 HOH HOH . 
M 5 HOH A 42 442 58 HOH HOH . 
M 5 HOH A 43 443 61 HOH HOH . 
M 5 HOH A 44 444 63 HOH HOH . 
M 5 HOH A 45 445 64 HOH HOH . 
M 5 HOH A 46 446 65 HOH HOH . 
M 5 HOH A 47 447 66 HOH HOH . 
M 5 HOH A 48 448 68 HOH HOH . 
M 5 HOH A 49 449 69 HOH HOH . 
M 5 HOH A 50 450 70 HOH HOH . 
M 5 HOH A 51 451 73 HOH HOH . 
N 5 HOH B 1 201 5 HOH HOH . 
N 5 HOH B 2 202 11 HOH HOH . 
N 5 HOH B 3 203 22 HOH HOH . 
N 5 HOH B 4 204 36 HOH HOH . 
N 5 HOH B 5 205 37 HOH HOH . 
N 5 HOH B 6 206 40 HOH HOH . 
N 5 HOH B 7 207 62 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 LFA . . . E 4 -8.612 -0.505 64.4 1 59.1 ? C1 LFA 303 A 1 
HETATM 2 C C2 LFA . . . E 4 -7.995 -1.719 65.017 1 58.06 ? C2 LFA 303 A 1 
HETATM 3 C C3 LFA . . . E 4 -8.989 -2.833 65.074 1 55.38 ? C3 LFA 303 A 1 
HETATM 4 C C4 LFA . . . E 4 -8.569 -3.833 66.102 1 55.62 ? C4 LFA 303 A 1 
HETATM 5 C C5 LFA . . . E 4 -9.469 -5.025 66.056 1 53.99 ? C5 LFA 303 A 1 
HETATM 6 C C6 LFA . . . E 4 -8.838 -6.166 66.784 1 49.64 ? C6 LFA 303 A 1 
HETATM 7 C C7 LFA . . . E 4 -9.454 -7.455 66.353 1 45.55 ? C7 LFA 303 A 1 
HETATM 8 C C8 LFA . . . E 4 -8.54 -8.583 66.707 1 46.33 ? C8 LFA 303 A 1 
HETATM 9 C C9 LFA . . . E 4 -8.78 -9.746 65.801 1 46.85 ? C9 LFA 303 A 1 
HETATM 10 C C10 LFA . . . E 4 -7.912 -10.896 66.199 1 47.35 ? C10 LFA 303 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           670 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           10 
#