data_4GYC # _model_server_result.job_id I7xzxxzZDQ0ruqYKPxD3Pw _model_server_result.datetime_utc '2024-11-14 23:47:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gyc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":304}' # _entry.id 4GYC # _exptl.entry_id 4GYC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.547 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description EICOSANE _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4GYC _cell.length_a 49.465 _cell.length_b 113.674 _cell.length_c 126.185 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GYC _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 -x+1/2,y,-z+1 -1 0 0 0 1 0 0 0 -1 24.7325 0 126.185 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 205 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 205 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.336 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H42' _chem_comp.formula_weight 282.547 _chem_comp.id LFA _chem_comp.mon_nstd_flag . _chem_comp.name EICOSANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'LIPID FRAGMENT' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 LFA sing 181 n n C1 H11 LFA sing 182 n n C1 H12 LFA sing 183 n n C1 H13 LFA sing 184 n n C2 C3 LFA sing 185 n n C2 H21 LFA sing 186 n n C2 H22 LFA sing 187 n n C3 C4 LFA sing 188 n n C3 H31 LFA sing 189 n n C3 H32 LFA sing 190 n n C4 C5 LFA sing 191 n n C4 H41 LFA sing 192 n n C4 H42 LFA sing 193 n n C5 C6 LFA sing 194 n n C5 H51 LFA sing 195 n n C5 H52 LFA sing 196 n n C6 C7 LFA sing 197 n n C6 H61 LFA sing 198 n n C6 H62 LFA sing 199 n n C7 C8 LFA sing 200 n n C7 H71 LFA sing 201 n n C7 H72 LFA sing 202 n n C8 C9 LFA sing 203 n n C8 H81 LFA sing 204 n n C8 H82 LFA sing 205 n n C9 C10 LFA sing 206 n n C9 H91 LFA sing 207 n n C9 H92 LFA sing 208 n n C10 C11 LFA sing 209 n n C10 H101 LFA sing 210 n n C10 H102 LFA sing 211 n n C11 C12 LFA sing 212 n n C11 H111 LFA sing 213 n n C11 H112 LFA sing 214 n n C12 C13 LFA sing 215 n n C12 H121 LFA sing 216 n n C12 H122 LFA sing 217 n n C13 C14 LFA sing 218 n n C13 H131 LFA sing 219 n n C13 H132 LFA sing 220 n n C14 C15 LFA sing 221 n n C14 H141 LFA sing 222 n n C14 H142 LFA sing 223 n n C15 C16 LFA sing 224 n n C15 H151 LFA sing 225 n n C15 H152 LFA sing 226 n n C16 C17 LFA sing 227 n n C16 H161 LFA sing 228 n n C16 H162 LFA sing 229 n n C17 C18 LFA sing 230 n n C17 H171 LFA sing 231 n n C17 H172 LFA sing 232 n n C18 C19 LFA sing 233 n n C18 H181 LFA sing 234 n n C18 H182 LFA sing 235 n n C19 C20 LFA sing 236 n n C19 H191 LFA sing 237 n n C19 H192 LFA sing 238 n n C20 H201 LFA sing 239 n n C20 H202 LFA sing 240 n n C20 H203 LFA sing 241 n n # _atom_sites.entry_id 4GYC _atom_sites.fract_transf_matrix[1][1] 0.020216 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008797 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007925 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 RET A 1 301 305 RET RET . D 4 LFA A 1 302 1 LFA LFA . E 4 LFA A 1 303 2 LFA LFA . F 4 LFA A 1 304 3 LFA LFA . G 4 LFA A 1 305 4 LFA LFA . H 4 LFA A 1 306 5 LFA LFA . I 4 LFA A 1 307 6 LFA LFA . J 4 LFA A 1 308 7 LFA LFA . K 4 LFA A 1 309 8 LFA LFA . L 4 LFA A 1 310 9 LFA LFA . M 5 HOH A 1 401 1 HOH HOH . M 5 HOH A 2 402 2 HOH HOH . M 5 HOH A 3 403 3 HOH HOH . M 5 HOH A 4 404 4 HOH HOH . M 5 HOH A 5 405 6 HOH HOH . M 5 HOH A 6 406 7 HOH HOH . M 5 HOH A 7 407 8 HOH HOH . M 5 HOH A 8 408 9 HOH HOH . M 5 HOH A 9 409 10 HOH HOH . M 5 HOH A 10 410 12 HOH HOH . M 5 HOH A 11 411 14 HOH HOH . M 5 HOH A 12 412 15 HOH HOH . M 5 HOH A 13 413 16 HOH HOH . M 5 HOH A 14 414 17 HOH HOH . M 5 HOH A 15 415 18 HOH HOH . M 5 HOH A 16 416 19 HOH HOH . M 5 HOH A 17 417 20 HOH HOH . M 5 HOH A 18 418 21 HOH HOH . M 5 HOH A 19 419 23 HOH HOH . M 5 HOH A 20 420 24 HOH HOH . M 5 HOH A 21 421 25 HOH HOH . M 5 HOH A 22 422 26 HOH HOH . M 5 HOH A 23 423 27 HOH HOH . M 5 HOH A 24 424 29 HOH HOH . M 5 HOH A 25 425 30 HOH HOH . M 5 HOH A 26 426 32 HOH HOH . M 5 HOH A 27 427 33 HOH HOH . M 5 HOH A 28 428 34 HOH HOH . M 5 HOH A 29 429 35 HOH HOH . M 5 HOH A 30 430 38 HOH HOH . M 5 HOH A 31 431 39 HOH HOH . M 5 HOH A 32 432 41 HOH HOH . M 5 HOH A 33 433 46 HOH HOH . M 5 HOH A 34 434 48 HOH HOH . M 5 HOH A 35 435 49 HOH HOH . M 5 HOH A 36 436 51 HOH HOH . M 5 HOH A 37 437 52 HOH HOH . M 5 HOH A 38 438 53 HOH HOH . M 5 HOH A 39 439 55 HOH HOH . M 5 HOH A 40 440 56 HOH HOH . M 5 HOH A 41 441 57 HOH HOH . M 5 HOH A 42 442 58 HOH HOH . M 5 HOH A 43 443 61 HOH HOH . M 5 HOH A 44 444 63 HOH HOH . M 5 HOH A 45 445 64 HOH HOH . M 5 HOH A 46 446 65 HOH HOH . M 5 HOH A 47 447 66 HOH HOH . M 5 HOH A 48 448 68 HOH HOH . M 5 HOH A 49 449 69 HOH HOH . M 5 HOH A 50 450 70 HOH HOH . M 5 HOH A 51 451 73 HOH HOH . N 5 HOH B 1 201 5 HOH HOH . N 5 HOH B 2 202 11 HOH HOH . N 5 HOH B 3 203 22 HOH HOH . N 5 HOH B 4 204 36 HOH HOH . N 5 HOH B 5 205 37 HOH HOH . N 5 HOH B 6 206 40 HOH HOH . N 5 HOH B 7 207 62 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LFA . . . F 4 -2.877 17.799 34.273 1 28.24 ? C1 LFA 304 A 1 HETATM 2 C C2 LFA . . . F 4 -4.19 17.544 34.939 1 36.77 ? C2 LFA 304 A 1 HETATM 3 C C3 LFA . . . F 4 -4.952 16.497 34.191 1 46.27 ? C3 LFA 304 A 1 HETATM 4 C C4 LFA . . . F 4 -4.899 15.18 34.899 1 46.77 ? C4 LFA 304 A 1 HETATM 5 C C5 LFA . . . F 4 -4.514 14.098 33.94 1 46.65 ? C5 LFA 304 A 1 HETATM 6 C C6 LFA . . . F 4 -4.492 12.771 34.63 1 38.51 ? C6 LFA 304 A 1 HETATM 7 C C7 LFA . . . F 4 -3.681 11.814 33.813 1 39.9 ? C7 LFA 304 A 1 HETATM 8 C C8 LFA . . . F 4 -3.882 10.43 34.331 1 40.07 ? C8 LFA 304 A 1 HETATM 9 C C9 LFA . . . F 4 -2.762 9.515 33.961 1 37.44 ? C9 LFA 304 A 1 HETATM 10 C C10 LFA . . . F 4 -2.758 8.396 34.956 1 33.62 ? C10 LFA 304 A 1 HETATM 11 C C11 LFA . . . F 4 -1.752 7.343 34.635 1 34.61 ? C11 LFA 304 A 1 HETATM 12 C C12 LFA . . . F 4 -1.957 6.185 35.557 1 36.3 ? C12 LFA 304 A 1 HETATM 13 C C13 LFA . . . F 4 -1.167 4.99 35.122 1 33.09 ? C13 LFA 304 A 1 HETATM 14 C C14 LFA . . . F 4 -1.717 4.41 33.864 1 35.6 ? C14 LFA 304 A 1 HETATM 15 C C15 LFA . . . F 4 -0.937 3.195 33.485 1 36.79 ? C15 LFA 304 A 1 HETATM 16 C C16 LFA . . . F 4 -1.461 2.607 32.218 1 33.32 ? C16 LFA 304 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 223 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #