data_4GZ5 # _model_server_result.job_id BZUB8pDzcnMMNpDnorB9WA _model_server_result.datetime_utc '2024-11-14 16:43:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gz5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":1505}' # _entry.id 4GZ5 # _exptl.entry_id 4GZ5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 16 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4GZ5 _cell.length_a 272.039 _cell.length_b 272.039 _cell.length_c 142.08 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GZ5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 PISA dodecameric 12 author_and_software_defined_assembly 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,I,Y 1 1 B,J,K,L,M,N,Z 2 1 C,O,P,Q,R,S 3 1 D,T,U,V,W,X,AA 4 1 D,T,U,V,W,X,AA 5 2,3,4 A,B,C,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,Y,Z 5 1,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_554 x,y,z-1 1 0 0 0 1 0 0 0 1 0 0 -142.08 3 'crystal symmetry operation' 2_564 -y,x-y+1,z-1 -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -136.0195 235.592685 -142.08 4 'crystal symmetry operation' 3_454 -x+y-1,-x,z-1 -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -272.039 0 -142.08 5 'crystal symmetry operation' 2_565 -y,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -136.0195 235.592685 0 6 'crystal symmetry operation' 3_455 -x+y-1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -272.039 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 S N N ? 3 U N N ? 3 V N N ? 3 W N N ? 3 X N N # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 290 n n S O2 SO4 doub 291 n n S O3 SO4 sing 292 n n S O4 SO4 sing 293 n n # _atom_sites.entry_id 4GZ5 _atom_sites.fract_transf_matrix[1][1] 0.003676 _atom_sites.fract_transf_matrix[1][2] 0.002122 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004245 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007038 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 UD1 A 1 1501 1501 UD1 UD1 . F 3 SO4 A 1 1502 1601 SO4 SO4 . G 3 SO4 A 1 1503 1602 SO4 SO4 . H 3 SO4 A 1 1504 1603 SO4 SO4 . I 3 SO4 A 1 1505 1604 SO4 SO4 . J 2 UD1 B 1 1501 1501 UD1 UD1 . K 3 SO4 B 1 1502 1601 SO4 SO4 . L 3 SO4 B 1 1503 1602 SO4 SO4 . M 3 SO4 B 1 1504 1603 SO4 SO4 . N 3 SO4 B 1 1505 1604 SO4 SO4 . O 2 UD1 C 1 1501 1501 UD1 UD1 . P 3 SO4 C 1 1502 1601 SO4 SO4 . Q 3 SO4 C 1 1503 1602 SO4 SO4 . R 3 SO4 C 1 1504 1603 SO4 SO4 . S 3 SO4 C 1 1505 1604 SO4 SO4 . T 2 UD1 D 1 1501 1501 UD1 UD1 . U 3 SO4 D 1 1502 1601 SO4 SO4 . V 3 SO4 D 1 1503 1602 SO4 SO4 . W 3 SO4 D 1 1504 1603 SO4 SO4 . X 3 SO4 D 1 1505 1604 SO4 SO4 . Y 4 HOH A 1 1601 4 HOH HOH . Y 4 HOH A 2 1602 8 HOH HOH . Y 4 HOH A 3 1603 9 HOH HOH . Z 4 HOH B 1 1601 3 HOH HOH . Z 4 HOH B 2 1602 10 HOH HOH . Z 4 HOH B 3 1603 12 HOH HOH . Z 4 HOH B 4 1604 16 HOH HOH . Z 4 HOH B 5 1605 17 HOH HOH . Z 4 HOH B 6 1606 18 HOH HOH . AA 4 HOH D 1 1601 1 HOH HOH . AA 4 HOH D 2 1602 2 HOH HOH . AA 4 HOH D 3 1603 7 HOH HOH . AA 4 HOH D 4 1604 11 HOH HOH . AA 4 HOH D 5 1605 13 HOH HOH . AA 4 HOH D 6 1606 14 HOH HOH . AA 4 HOH D 7 1607 15 HOH HOH . AA 4 HOH D 8 1608 19 HOH HOH . AA 4 HOH D 9 1609 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . S 3 -96.102 63.074 -6.066 1 134.05 ? S SO4 1505 C 1 HETATM 2 O O1 SO4 . . . S 3 -96.131 62.032 -7.089 1 133.9 ? O1 SO4 1505 C 1 HETATM 3 O O2 SO4 . . . S 3 -97.335 63.852 -6.131 1 134.16 ? O2 SO4 1505 C 1 HETATM 4 O O3 SO4 . . . S 3 -95.975 62.466 -4.744 1 133.83 ? O3 SO4 1505 C 1 HETATM 5 O O4 SO4 . . . S 3 -94.962 63.954 -6.305 1 134.21 ? O4 SO4 1505 C 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 5 #