data_4GZ9 # _model_server_result.job_id TE-6oWdej_j4dxcLYmizsg _model_server_result.datetime_utc '2024-10-28 02:25:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gz9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":608}' # _entry.id 4GZ9 # _exptl.entry_id 4GZ9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4GZ9 _cell.length_a 245.359 _cell.length_b 245.359 _cell.length_c 47.93 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GZ9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 3 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K 1 1 A,B,C,D,E,F,G,H,I,J,K 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 47.93 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 1150 NAG 2 n B NAG 2 B 2 NAG A 1151 NAG 2 n B BMA 3 B 3 BMA A 1152 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 A CYS 27 1_555 A SG CYS 36 A CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf2 A SG CYS 64 A CYS 82 1_555 A SG CYS 86 A CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf3 A SG CYS 129 A CYS 147 1_555 A SG CYS 155 A CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf4 A SG CYS 188 A CYS 206 1_555 A SG CYS 210 A CYS 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? disulf ? disulf5 A SG CYS 257 A CYS 275 1_555 A SG CYS 406 A CYS 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? disulf ? disulf6 A SG CYS 413 A CYS 431 1_555 A SG CYS 565 A CYS 583 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? covale ? covale1 A ND2 ASN 132 A ASN 150 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 A ND2 ASN 243 A ASN 261 1_555 C C1 NAG . A NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale3 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale4 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? metalc ? metalc1 A OE1 GLU 60 A GLU 78 1_555 E CA CA . A CA 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc2 A OD2 ASP 67 A ASP 85 1_555 E CA CA . A CA 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc3 A OD1 ASP 108 A ASP 126 1_555 E CA CA . A CA 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc4 A O GLU 110 A GLU 128 1_555 E CA CA . A CA 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc5 A O THR 111 A THR 129 1_555 E CA CA . A CA 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc6 A OE1 GLU 177 A GLU 195 1_555 D CA CA . A CA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc7 A OD2 ASP 191 A ASP 209 1_555 D CA CA . A CA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc8 A OD1 ASP 191 A ASP 209 1_555 D CA CA . A CA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? metalc ? metalc9 A OD1 ASP 232 A ASP 250 1_555 D CA CA . A CA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc10 A O ALA 234 A ALA 252 1_555 D CA CA . A CA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc11 A O ILE 235 A ILE 253 1_555 D CA CA . A CA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc12 D CA CA . A CA 605 1_555 K O HOH . A HOH 728 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc13 E CA CA . A CA 606 1_555 K O HOH . A HOH 729 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 353 n n S O2 SO4 doub 354 n n S O3 SO4 sing 355 n n S O4 SO4 sing 356 n n # _atom_sites.entry_id 4GZ9 _atom_sites.fract_transf_matrix[1][1] 0.004076 _atom_sites.fract_transf_matrix[1][2] 0.002353 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004706 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020864 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 604 1261 NAG NAG . D 4 CA A 1 605 1 CA CA . E 4 CA A 1 606 2 CA CA . F 5 SO4 A 1 607 1 SO4 SO4 . G 5 SO4 A 1 608 2 SO4 SO4 . H 6 EDO A 1 609 3318 EDO EDO . I 6 EDO A 1 610 3319 EDO EDO . J 6 EDO A 1 611 3320 EDO EDO . K 7 HOH A 1 701 1 HOH HOH . K 7 HOH A 2 702 2 HOH HOH . K 7 HOH A 3 703 3 HOH HOH . K 7 HOH A 4 704 4 HOH HOH . K 7 HOH A 5 705 5 HOH HOH . K 7 HOH A 6 706 6 HOH HOH . K 7 HOH A 7 707 7 HOH HOH . K 7 HOH A 8 708 8 HOH HOH . K 7 HOH A 9 709 9 HOH HOH . K 7 HOH A 10 710 10 HOH HOH . K 7 HOH A 11 711 11 HOH HOH . K 7 HOH A 12 712 12 HOH HOH . K 7 HOH A 13 713 13 HOH HOH . K 7 HOH A 14 714 14 HOH HOH . K 7 HOH A 15 715 15 HOH HOH . K 7 HOH A 16 716 16 HOH HOH . K 7 HOH A 17 717 17 HOH HOH . K 7 HOH A 18 718 18 HOH HOH . K 7 HOH A 19 719 20 HOH HOH . K 7 HOH A 20 720 21 HOH HOH . K 7 HOH A 21 721 22 HOH HOH . K 7 HOH A 22 722 23 HOH HOH . K 7 HOH A 23 723 24 HOH HOH . K 7 HOH A 24 724 26 HOH HOH . K 7 HOH A 25 725 29 HOH HOH . K 7 HOH A 26 726 30 HOH HOH . K 7 HOH A 27 727 32 HOH HOH . K 7 HOH A 28 728 1 HOH HOH . K 7 HOH A 29 729 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . G 5 -97.495 89.394 -7.69 1 92.49 ? S SO4 608 A 1 HETATM 2 O O1 SO4 . . . G 5 -98.17 88.249 -8.336 1 90.12 ? O1 SO4 608 A 1 HETATM 3 O O2 SO4 . . . G 5 -97.715 90.596 -8.527 1 94.45 ? O2 SO4 608 A 1 HETATM 4 O O3 SO4 . . . G 5 -98.052 89.659 -6.334 1 83.02 ? O3 SO4 608 A 1 HETATM 5 O O4 SO4 . . . G 5 -96.047 89.049 -7.635 1 88.8 ? O4 SO4 608 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #