data_4GZO
#
_model_server_result.job_id            1kBZaDFyd6IBnp1yeNmprA 
_model_server_result.datetime_utc      '2024-10-19 11:38:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4gzo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":507}' 
#
_entry.id    4GZO 
#
_exptl.entry_id    4GZO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4GZO 
_cell.length_a            110.091 
_cell.length_b            110.091 
_cell.length_c            77.748 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4GZO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        90 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 4 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 110.091 0 
3 'crystal symmetry operation' 3_555 -y+1/2,x+1/2,z 0 -1 0 1 0 0 0 0 1 55.0455 55.0455 0 
4 'crystal symmetry operation' 4_455 y-1/2,-x+1/2,z 0 1 0 -1 0 0 0 0 1 -55.0455 55.0455 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
_pdbx_entity_branch.entity_id    2 
_pdbx_entity_branch.type         oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 
3 ? 2 4 3 MAN BMA C1 O1 . O3 HO3 . sing 
4 ? 2 5 3 MAN BMA C1 O1 . O6 HO6 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n B NAG 1 B 1 NAG A 901 NAG 
2 n B NAG 2 B 2 NAG A 902 NAG 
2 n B BMA 3 B 3 BMA A 903 MAN 
2 n B MAN 4 B 4 MAN A 904 MAN 
2 n B MAN 5 B 5 MAN A 905 MAN 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 16 A CYS 92 1_555 A SG CYS 341 A CYS 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf2 A SG CYS 48 A CYS 124 1_555 A SG CYS 53 A CYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf3 A SG CYS 99 A CYS 175 1_555 A SG CYS 117 A CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf4 A SG CYS 107 A CYS 183 1_555 A SG CYS 154 A CYS 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
disulf ? disulf5 A SG CYS 156 A CYS 232 1_555 A SG CYS 161 A CYS 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf6 A SG CYS 202 A CYS 278 1_555 A SG CYS 215 A CYS 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
disulf ? disulf7 A SG CYS 204 A CYS 280 1_555 A SG CYS 213 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
disulf ? disulf8 A SG CYS 242 A CYS 318 1_555 A SG CYS 261 A CYS 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
disulf ? disulf9 A SG CYS 345 A CYS 421 1_555 A SG CYS 371 A CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
covale ? covale1 A ND2 ASN 70 A ASN 146 1_555 D C1 NAG . A NAG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale2 A ND2 ASN 124 A ASN 200 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale3 A ND2 ASN 291 A ASN 367 1_555 E C1 NAG . A NAG 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale4 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? 
covale ? covale5 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale6 B O3 BMA . B BMA 3 1_555 B C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale7 B O6 BMA . B BMA 3 1_555 B C1 MAN . B MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? 
metalc ? metalc1 A O ASP 217 A ASP 293 1_555 F CA CA . A CA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? 
metalc ? metalc2 A O GLY 221 A GLY 297 1_555 F CA CA . A CA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? 
metalc ? metalc3 A OD2 ASP 248 A ASP 324 1_555 F CA CA . A CA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? 
metalc ? metalc4 A O GLY 269 A GLY 345 1_555 F CA CA . A CA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? 
metalc ? metalc5 A O HIS 271 A HIS 347 1_555 F CA CA . A CA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? 
metalc ? metalc6 F CA CA . A CA 509 1_555 H O HOH . A HOH 641 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 318 n n 
C1 O1 NAG sing 319 n n 
C1 O5 NAG sing 320 n n 
C1 H1 NAG sing 321 n n 
C2 C3 NAG sing 322 n n 
C2 N2 NAG sing 323 n n 
C2 H2 NAG sing 324 n n 
C3 C4 NAG sing 325 n n 
C3 O3 NAG sing 326 n n 
C3 H3 NAG sing 327 n n 
C4 C5 NAG sing 328 n n 
C4 O4 NAG sing 329 n n 
C4 H4 NAG sing 330 n n 
C5 C6 NAG sing 331 n n 
C5 O5 NAG sing 332 n n 
C5 H5 NAG sing 333 n n 
C6 O6 NAG sing 334 n n 
C6 H61 NAG sing 335 n n 
C6 H62 NAG sing 336 n n 
C7 C8 NAG sing 337 n n 
C7 N2 NAG sing 338 n n 
C7 O7 NAG doub 339 n n 
C8 H81 NAG sing 340 n n 
C8 H82 NAG sing 341 n n 
C8 H83 NAG sing 342 n n 
N2 HN2 NAG sing 343 n n 
O1 HO1 NAG sing 344 n n 
O3 HO3 NAG sing 345 n n 
O4 HO4 NAG sing 346 n n 
O6 HO6 NAG sing 347 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     4GZO 
_atom_sites.fract_transf_matrix[1][1]    0.009083 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009083 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012862 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 EPE A 1 501 800 EPE EPE . 
D 4 NAG A 1 507 921 NAG NAG . 
E 4 NAG A 1 508 941 NAG NAG . 
F 5 CA A 1 509 501 CA CA . 
G 5 CA A 1 510 502 CA CA . 
H 6 HOH A 1 601 1 HOH HOH . 
H 6 HOH A 2 602 2 HOH HOH . 
H 6 HOH A 3 603 3 HOH HOH . 
H 6 HOH A 4 604 4 HOH HOH . 
H 6 HOH A 5 605 5 HOH HOH . 
H 6 HOH A 6 606 6 HOH HOH . 
H 6 HOH A 7 607 7 HOH HOH . 
H 6 HOH A 8 608 8 HOH HOH . 
H 6 HOH A 9 609 9 HOH HOH . 
H 6 HOH A 10 610 10 HOH HOH . 
H 6 HOH A 11 611 11 HOH HOH . 
H 6 HOH A 12 612 12 HOH HOH . 
H 6 HOH A 13 613 13 HOH HOH . 
H 6 HOH A 14 614 14 HOH HOH . 
H 6 HOH A 15 615 15 HOH HOH . 
H 6 HOH A 16 616 16 HOH HOH . 
H 6 HOH A 17 617 17 HOH HOH . 
H 6 HOH A 18 618 18 HOH HOH . 
H 6 HOH A 19 619 19 HOH HOH . 
H 6 HOH A 20 620 20 HOH HOH . 
H 6 HOH A 21 621 21 HOH HOH . 
H 6 HOH A 22 622 622 HOH HOH . 
H 6 HOH A 23 623 23 HOH HOH . 
H 6 HOH A 24 624 624 HOH HOH . 
H 6 HOH A 25 625 25 HOH HOH . 
H 6 HOH A 26 626 26 HOH HOH . 
H 6 HOH A 27 627 27 HOH HOH . 
H 6 HOH A 28 628 28 HOH HOH . 
H 6 HOH A 29 629 29 HOH HOH . 
H 6 HOH A 30 630 30 HOH HOH . 
H 6 HOH A 31 631 31 HOH HOH . 
H 6 HOH A 32 632 32 HOH HOH . 
H 6 HOH A 33 633 33 HOH HOH . 
H 6 HOH A 34 634 34 HOH HOH . 
H 6 HOH A 35 635 35 HOH HOH . 
H 6 HOH A 36 636 36 HOH HOH . 
H 6 HOH A 37 637 37 HOH HOH . 
H 6 HOH A 38 638 38 HOH HOH . 
H 6 HOH A 39 639 39 HOH HOH . 
H 6 HOH A 40 640 40 HOH HOH . 
H 6 HOH A 41 641 41 HOH HOH . 
H 6 HOH A 42 642 42 HOH HOH . 
H 6 HOH A 43 643 43 HOH HOH . 
H 6 HOH A 44 644 44 HOH HOH . 
H 6 HOH A 45 645 45 HOH HOH . 
H 6 HOH A 46 646 46 HOH HOH . 
H 6 HOH A 47 647 47 HOH HOH . 
H 6 HOH A 48 648 48 HOH HOH . 
H 6 HOH A 49 649 49 HOH HOH . 
H 6 HOH A 50 650 50 HOH HOH . 
H 6 HOH A 51 651 51 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . D 4 10.947 36.757 -2.88 1 78.38 ? C1 NAG 507 A 1 
HETATM 2 C C2 NAG . . . D 4 11.327 37.401 -4.207 1 84 ? C2 NAG 507 A 1 
HETATM 3 C C3 NAG . . . D 4 11.981 36.423 -5.188 1 86.68 ? C3 NAG 507 A 1 
HETATM 4 C C4 NAG . . . D 4 13.017 35.505 -4.504 1 87.12 ? C4 NAG 507 A 1 
HETATM 5 C C5 NAG . . . D 4 12.352 34.87 -3.276 1 84.55 ? C5 NAG 507 A 1 
HETATM 6 C C6 NAG . . . D 4 13.259 33.899 -2.525 1 84.62 ? C6 NAG 507 A 1 
HETATM 7 C C7 NAG . . . D 4 10.117 39.266 -5.207 1 85.16 ? C7 NAG 507 A 1 
HETATM 8 C C8 NAG . . . D 4 8.838 39.746 -5.828 1 84.99 ? C8 NAG 507 A 1 
HETATM 9 N N2 NAG . . . D 4 10.147 37.99 -4.814 1 84.4 ? N2 NAG 507 A 1 
HETATM 10 O O3 NAG . . . D 4 12.521 37.207 -6.24 1 89.89 ? O3 NAG 507 A 1 
HETATM 11 O O4 NAG . . . D 4 13.507 34.506 -5.394 1 90.32 ? O4 NAG 507 A 1 
HETATM 12 O O5 NAG . . . D 4 11.994 35.927 -2.408 1 80.97 ? O5 NAG 507 A 1 
HETATM 13 O O6 NAG . . . D 4 14.455 34.607 -2.346 1 85.57 ? O6 NAG 507 A 1 
HETATM 14 O O7 NAG . . . D 4 11.069 40.038 -5.089 1 85.68 ? O7 NAG 507 A 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           338 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           14 
#