data_4GZO # _model_server_result.job_id GhnirOuFCCmiI8htkxE0Og _model_server_result.datetime_utc '2024-10-19 11:41:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gzo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":510}' # _entry.id 4GZO # _exptl.entry_id 4GZO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4GZO _cell.length_a 110.091 _cell.length_b 110.091 _cell.length_c 77.748 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GZO _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 110.091 0 3 'crystal symmetry operation' 3_555 -y+1/2,x+1/2,z 0 -1 0 1 0 0 0 0 1 55.0455 55.0455 0 4 'crystal symmetry operation' 4_455 y-1/2,-x+1/2,z 0 1 0 -1 0 0 0 0 1 -55.0455 55.0455 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 2 5 3 MAN BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 901 NAG 2 n B NAG 2 B 2 NAG A 902 NAG 2 n B BMA 3 B 3 BMA A 903 MAN 2 n B MAN 4 B 4 MAN A 904 MAN 2 n B MAN 5 B 5 MAN A 905 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 16 A CYS 92 1_555 A SG CYS 341 A CYS 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf2 A SG CYS 48 A CYS 124 1_555 A SG CYS 53 A CYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf3 A SG CYS 99 A CYS 175 1_555 A SG CYS 117 A CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf4 A SG CYS 107 A CYS 183 1_555 A SG CYS 154 A CYS 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf5 A SG CYS 156 A CYS 232 1_555 A SG CYS 161 A CYS 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 A SG CYS 202 A CYS 278 1_555 A SG CYS 215 A CYS 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf7 A SG CYS 204 A CYS 280 1_555 A SG CYS 213 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf8 A SG CYS 242 A CYS 318 1_555 A SG CYS 261 A CYS 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf9 A SG CYS 345 A CYS 421 1_555 A SG CYS 371 A CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? covale ? covale1 A ND2 ASN 70 A ASN 146 1_555 D C1 NAG . A NAG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale2 A ND2 ASN 124 A ASN 200 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale3 A ND2 ASN 291 A ASN 367 1_555 E C1 NAG . A NAG 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale4 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale5 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale6 B O3 BMA . B BMA 3 1_555 B C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale7 B O6 BMA . B BMA 3 1_555 B C1 MAN . B MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? metalc ? metalc1 A O ASP 217 A ASP 293 1_555 F CA CA . A CA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc2 A O GLY 221 A GLY 297 1_555 F CA CA . A CA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc3 A OD2 ASP 248 A ASP 324 1_555 F CA CA . A CA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc4 A O GLY 269 A GLY 345 1_555 F CA CA . A CA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc5 A O HIS 271 A HIS 347 1_555 F CA CA . A CA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc6 F CA CA . A CA 509 1_555 H O HOH . A HOH 641 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4GZO _atom_sites.fract_transf_matrix[1][1] 0.009083 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009083 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012862 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EPE A 1 501 800 EPE EPE . D 4 NAG A 1 507 921 NAG NAG . E 4 NAG A 1 508 941 NAG NAG . F 5 CA A 1 509 501 CA CA . G 5 CA A 1 510 502 CA CA . H 6 HOH A 1 601 1 HOH HOH . H 6 HOH A 2 602 2 HOH HOH . H 6 HOH A 3 603 3 HOH HOH . H 6 HOH A 4 604 4 HOH HOH . H 6 HOH A 5 605 5 HOH HOH . H 6 HOH A 6 606 6 HOH HOH . H 6 HOH A 7 607 7 HOH HOH . H 6 HOH A 8 608 8 HOH HOH . H 6 HOH A 9 609 9 HOH HOH . H 6 HOH A 10 610 10 HOH HOH . H 6 HOH A 11 611 11 HOH HOH . H 6 HOH A 12 612 12 HOH HOH . H 6 HOH A 13 613 13 HOH HOH . H 6 HOH A 14 614 14 HOH HOH . H 6 HOH A 15 615 15 HOH HOH . H 6 HOH A 16 616 16 HOH HOH . H 6 HOH A 17 617 17 HOH HOH . H 6 HOH A 18 618 18 HOH HOH . H 6 HOH A 19 619 19 HOH HOH . H 6 HOH A 20 620 20 HOH HOH . H 6 HOH A 21 621 21 HOH HOH . H 6 HOH A 22 622 622 HOH HOH . H 6 HOH A 23 623 23 HOH HOH . H 6 HOH A 24 624 624 HOH HOH . H 6 HOH A 25 625 25 HOH HOH . H 6 HOH A 26 626 26 HOH HOH . H 6 HOH A 27 627 27 HOH HOH . H 6 HOH A 28 628 28 HOH HOH . H 6 HOH A 29 629 29 HOH HOH . H 6 HOH A 30 630 30 HOH HOH . H 6 HOH A 31 631 31 HOH HOH . H 6 HOH A 32 632 32 HOH HOH . H 6 HOH A 33 633 33 HOH HOH . H 6 HOH A 34 634 34 HOH HOH . H 6 HOH A 35 635 35 HOH HOH . H 6 HOH A 36 636 36 HOH HOH . H 6 HOH A 37 637 37 HOH HOH . H 6 HOH A 38 638 38 HOH HOH . H 6 HOH A 39 639 39 HOH HOH . H 6 HOH A 40 640 40 HOH HOH . H 6 HOH A 41 641 41 HOH HOH . H 6 HOH A 42 642 42 HOH HOH . H 6 HOH A 43 643 43 HOH HOH . H 6 HOH A 44 644 44 HOH HOH . H 6 HOH A 45 645 45 HOH HOH . H 6 HOH A 46 646 46 HOH HOH . H 6 HOH A 47 647 47 HOH HOH . H 6 HOH A 48 648 48 HOH HOH . H 6 HOH A 49 649 49 HOH HOH . H 6 HOH A 50 650 50 HOH HOH . H 6 HOH A 51 651 51 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 5 _atom_site.Cartn_x 0.997 _atom_site.Cartn_y 55.259 _atom_site.Cartn_z 4.06 _atom_site.occupancy 0.25 _atom_site.B_iso_or_equiv 17.51 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 510 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 1 #