data_4H0L # _model_server_result.job_id k55e5Ud6YdQJgeVN2WxDQQ _model_server_result.datetime_utc '2024-11-22 21:54:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4h0l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":308}' # _entry.id 4H0L # _exptl.entry_id 4H0L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 287.397 _entity.id 13 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-NONYL-4-HYDROXYQUINOLINE N-OXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4H0L _cell.length_a 159.133 _cell.length_b 159.133 _cell.length_c 362.25 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4H0L _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -79.5665 137.813221 60.375 # _struct_asym.details ? _struct_asym.entity_id 13 _struct_asym.id P _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 108 D CYS 108 1_555 D SG CYS 126 D CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf2 D SG CYS 113 D CYS 113 1_555 D SG CYS 128 D CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 A OE2 GLU 75 A GLU 75 1_555 I CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.879 ? metalc ? metalc2 A OE1 GLU 75 A GLU 75 1_555 I CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc3 A NE2 HIS 86 A HIS 86 1_555 J FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc4 A NE2 HIS 100 A HIS 100 1_555 K FE HEM . A HEM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc5 A NE2 HIS 187 A HIS 187 1_555 J FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc6 A NE2 HIS 202 A HIS 202 1_555 K FE HEM . A HEM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc7 I CD CD . A CD 301 1_555 C NE2 HIS 143 C HIS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc8 L FE HEM . A HEM 304 1_555 P OH QNO . A QNO 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc9 L FE HEM . A HEM 304 1_555 Z O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc10 B OD1 ASP 58 B ASP 58 1_555 R CD CD . B CD 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc11 S MG CLA . B CLA 202 1_555 AA O HOH . B HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc12 C N TYR 1 C TYR 1 1_555 V FE HEM . C HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc13 C NE2 HIS 26 C HIS 26 1_555 V FE HEM . C HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc14 D SG CYS 108 D CYS 108 1_555 W FE1 FES . D FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc15 D SG CYS 126 D CYS 126 1_555 W FE1 FES . D FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc16 D ND1 HIS 129 D HIS 129 1_555 W FE2 FES . D FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? # _chem_comp.formula 'C18 H25 N O2' _chem_comp.formula_weight 287.397 _chem_comp.id QNO _chem_comp.mon_nstd_flag . _chem_comp.name '2-NONYL-4-HYDROXYQUINOLINE N-OXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C29 C28 QNO sing 746 n n C29 H291 QNO sing 747 n n C29 H292 QNO sing 748 n n C29 H293 QNO sing 749 n n C28 C27 QNO sing 750 n n C28 H281 QNO sing 751 n n C28 H282 QNO sing 752 n n C27 C26 QNO sing 753 n n C27 H271 QNO sing 754 n n C27 H272 QNO sing 755 n n C26 C25 QNO sing 756 n n C26 H261 QNO sing 757 n n C26 H262 QNO sing 758 n n C25 C24 QNO sing 759 n n C25 H251 QNO sing 760 n n C25 H252 QNO sing 761 n n C24 C23 QNO sing 762 n n C24 H241 QNO sing 763 n n C24 H242 QNO sing 764 n n C23 C22 QNO sing 765 n n C23 H231 QNO sing 766 n n C23 H232 QNO sing 767 n n C22 C21 QNO sing 768 n n C22 H221 QNO sing 769 n n C22 H222 QNO sing 770 n n C21 C2 QNO sing 771 n n C21 H211 QNO sing 772 n n C21 H212 QNO sing 773 n n C2 C3 QNO sing 774 n y C2 N1 QNO doub 775 n y C3 C4 QNO doub 776 n y C3 H3 QNO sing 777 n n C4 O41 QNO sing 778 n n C4 C5 QNO sing 779 n y O41 H41 QNO sing 780 n n C5 C51 QNO doub 781 n y C5 C6 QNO sing 782 n y C51 C52 QNO sing 783 n y C51 H51 QNO sing 784 n n C52 C62 QNO doub 785 n y C52 H52 QNO sing 786 n n C62 C61 QNO sing 787 n y C62 H62 QNO sing 788 n n C61 C6 QNO doub 789 n y C61 H61 QNO sing 790 n n C6 N1 QNO sing 791 n y N1 OH QNO sing 792 n n # _atom_sites.entry_id 4H0L _atom_sites.fract_transf_matrix[1][1] 0.006284 _atom_sites.fract_transf_matrix[1][2] 0.003628 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007256 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002761 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 9 CD A 1 301 301 CD CD . J 10 HEM A 1 302 302 HEM HEM . K 10 HEM A 1 303 303 HEM HEM . L 10 HEM A 1 304 304 HEM HEM . M 11 OPC A 1 305 305 OPC OPC . N 12 UMQ A 1 306 306 UMQ UMQ . O 12 UMQ A 1 307 307 UMQ UMQ . P 13 QNO A 1 308 308 QNO QNO . Q 12 UMQ A 1 309 201 UMQ UMQ . R 9 CD B 1 201 202 CD CD . S 14 CLA B 1 202 203 CLA CLA . T 11 OPC B 1 203 204 OPC OPC . U 12 UMQ C 1 301 309 UMQ UMQ . V 10 HEM C 1 302 301 HEM HEM . W 15 FES D 1 200 200 FES FES . X 16 SQD D 1 201 201 SQD SQD . Y 17 BCR G 1 101 101 BCR BCR . Z 18 HOH A 1 401 402 HOH HOH . Z 18 HOH A 2 402 403 HOH HOH . AA 18 HOH B 1 301 301 HOH HOH . AA 18 HOH B 2 302 302 HOH HOH . AA 18 HOH B 3 303 303 HOH HOH . BA 18 HOH C 1 401 401 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C29 QNO . . . P 13 -36.465 88.668 18.685 1 91.8 ? C29 QNO 308 A 1 HETATM 2 C C28 QNO . . . P 13 -34.972 88.674 18.752 1 107.74 ? C28 QNO 308 A 1 HETATM 3 C C27 QNO . . . P 13 -34.45 87.288 18.562 1 110.39 ? C27 QNO 308 A 1 HETATM 4 C C26 QNO . . . P 13 -33.181 87.064 19.326 1 121.97 ? C26 QNO 308 A 1 HETATM 5 C C25 QNO . . . P 13 -32.655 85.708 18.974 1 128.4 ? C25 QNO 308 A 1 HETATM 6 C C24 QNO . . . P 13 -31.362 85.37 19.651 1 125.64 ? C24 QNO 308 A 1 HETATM 7 C C23 QNO . . . P 13 -31.074 83.921 19.39 1 139.64 ? C23 QNO 308 A 1 HETATM 8 C C22 QNO . . . P 13 -29.627 83.676 19.08 1 113.35 ? C22 QNO 308 A 1 HETATM 9 C C21 QNO . . . P 13 -29.494 82.633 18.007 1 99.34 ? C21 QNO 308 A 1 HETATM 10 C C2 QNO . . . P 13 -28.251 82.853 17.202 1 99.88 ? C2 QNO 308 A 1 HETATM 11 C C3 QNO . . . P 13 -26.927 82.962 17.834 1 92.15 ? C3 QNO 308 A 1 HETATM 12 C C4 QNO . . . P 13 -26.127 83.955 17.255 1 99.8 ? C4 QNO 308 A 1 HETATM 13 O O41 QNO . . . P 13 -25.116 84.452 18.041 1 113.17 ? O41 QNO 308 A 1 HETATM 14 C C5 QNO . . . P 13 -25.989 83.989 15.948 1 98.04 ? C5 QNO 308 A 1 HETATM 15 C C51 QNO . . . P 13 -24.833 84.46 15.296 1 92.31 ? C51 QNO 308 A 1 HETATM 16 C C52 QNO . . . P 13 -24.751 84.458 13.939 1 89.65 ? C52 QNO 308 A 1 HETATM 17 C C62 QNO . . . P 13 -25.781 83.996 13.21 1 98.47 ? C62 QNO 308 A 1 HETATM 18 C C61 QNO . . . P 13 -26.907 83.535 13.828 1 96.97 ? C61 QNO 308 A 1 HETATM 19 C C6 QNO . . . P 13 -27.013 83.529 15.234 1 99.63 ? C6 QNO 308 A 1 HETATM 20 N N1 QNO . . . P 13 -28.115 83.077 15.798 1 103.95 ? N1 QNO 308 A 1 HETATM 21 O OH QNO . . . P 13 -28.968 82.556 14.968 1 83.98 ? OH QNO 308 A 1 HETATM 22 H H291 QNO . . . P 13 -36.796 89.582 18.753 1 110.16 ? H291 QNO 308 A 1 HETATM 23 H H292 QNO . . . P 13 -36.75 88.281 17.838 1 110.16 ? H292 QNO 308 A 1 HETATM 24 H H293 QNO . . . P 13 -36.821 88.138 19.421 1 110.16 ? H293 QNO 308 A 1 HETATM 25 H H281 QNO . . . P 13 -34.617 89.248 18.052 1 129.28 ? H281 QNO 308 A 1 HETATM 26 H H282 QNO . . . P 13 -34.68 89.014 19.615 1 129.28 ? H282 QNO 308 A 1 HETATM 27 H H271 QNO . . . P 13 -34.289 87.128 17.618 1 132.46 ? H271 QNO 308 A 1 HETATM 28 H H272 QNO . . . P 13 -35.116 86.652 18.874 1 132.46 ? H272 QNO 308 A 1 HETATM 29 H H261 QNO . . . P 13 -32.524 87.74 19.089 1 146.36 ? H261 QNO 308 A 1 HETATM 30 H H262 QNO . . . P 13 -33.356 87.109 20.282 1 146.36 ? H262 QNO 308 A 1 HETATM 31 H H251 QNO . . . P 13 -33.318 85.037 19.21 1 154.08 ? H251 QNO 308 A 1 HETATM 32 H H252 QNO . . . P 13 -32.514 85.669 18.013 1 154.08 ? H252 QNO 308 A 1 HETATM 33 H H241 QNO . . . P 13 -30.653 85.918 19.275 1 150.76 ? H241 QNO 308 A 1 HETATM 34 H H242 QNO . . . P 13 -31.427 85.527 20.608 1 150.76 ? H242 QNO 308 A 1 HETATM 35 H H231 QNO . . . P 13 -31.317 83.405 20.177 1 167.57 ? H231 QNO 308 A 1 HETATM 36 H H232 QNO . . . P 13 -31.613 83.614 18.642 1 167.57 ? H232 QNO 308 A 1 HETATM 37 H H221 QNO . . . P 13 -29.17 83.373 19.883 1 136.02 ? H221 QNO 308 A 1 HETATM 38 H H222 QNO . . . P 13 -29.212 84.5 18.774 1 136.02 ? H222 QNO 308 A 1 HETATM 39 H H211 QNO . . . P 13 -30.268 82.658 17.419 1 119.21 ? H211 QNO 308 A 1 HETATM 40 H H212 QNO . . . P 13 -29.444 81.76 18.433 1 119.21 ? H212 QNO 308 A 1 HETATM 41 H H3 QNO . . . P 13 -26.62 82.371 18.539 1 110.58 ? H3 QNO 308 A 1 HETATM 42 H H41 QNO . . . P 13 -25.271 85.308 18.215 1 135.81 ? H41 QNO 308 A 1 HETATM 43 H H51 QNO . . . P 13 -24.087 84.79 15.822 1 110.77 ? H51 QNO 308 A 1 HETATM 44 H H52 QNO . . . P 13 -23.951 84.786 13.499 1 107.58 ? H52 QNO 308 A 1 HETATM 45 H H62 QNO . . . P 13 -25.727 83.996 12.241 1 118.17 ? H62 QNO 308 A 1 HETATM 46 H H61 QNO . . . P 13 -27.646 83.208 13.292 1 116.36 ? H61 QNO 308 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 51 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 46 #