data_4H13 # _model_server_result.job_id 5G--eUupCYoGpbusibrPlQ _model_server_result.datetime_utc '2024-11-22 20:56:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4h13 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Z","auth_seq_id":101}' # _entry.id 4H13 # _exptl.entry_id 4H13 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 114.229 _entity.id 20 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-OCTANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4H13 _cell.length_a 157.197 _cell.length_b 157.197 _cell.length_c 363.276 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4H13 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -78.5985 136.136595 60.546 # _struct_asym.details ? _struct_asym.entity_id 20 _struct_asym.id Z _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 108 D CYS 108 1_555 D SG CYS 126 D CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf2 D SG CYS 113 D CYS 113 1_555 D SG CYS 128 D CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc1 A OE2 GLU 75 A GLU 75 1_555 I CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc2 A NE2 HIS 86 A HIS 86 1_555 J FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc3 A NE2 HIS 100 A HIS 100 1_555 K FE HEM . A HEM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc4 A NE2 HIS 187 A HIS 187 1_555 J FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc5 A NE2 HIS 202 A HIS 202 1_555 K FE HEM . A HEM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc6 I CD CD . A CD 301 1_555 BA O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc7 I CD CD . A CD 301 1_555 C NE2 HIS 143 C HIS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc8 I CD CD . A CD 301 1_555 DA O HOH . C HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc9 L FE HEM . A HEM 304 1_555 BA O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? metalc ? metalc10 L FE HEM . A HEM 304 1_555 R OBD TDS . B TDS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.913 ? metalc ? metalc11 T MG CLA . B CLA 203 1_555 CA O HOH . B HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.777 ? metalc ? metalc12 C N TYR 1 C TYR 1 1_555 W FE HEM . C HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc13 C NE2 HIS 26 C HIS 26 1_555 W FE HEM . C HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc14 D SG CYS 108 D CYS 108 1_555 Y FE1 FES . D FES 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc15 D ND1 HIS 110 D HIS 110 1_555 Y FE2 FES . D FES 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc16 D SG CYS 126 D CYS 126 1_555 Y FE1 FES . D FES 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc17 D ND1 HIS 129 D HIS 129 1_555 Y FE2 FES . D FES 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? # _chem_comp.formula 'C8 H18' _chem_comp.formula_weight 114.229 _chem_comp.id OCT _chem_comp.mon_nstd_flag . _chem_comp.name N-OCTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 OCT sing 760 n n C1 H11 OCT sing 761 n n C1 H12 OCT sing 762 n n C1 H13 OCT sing 763 n n C2 C3 OCT sing 764 n n C2 H21 OCT sing 765 n n C2 H22 OCT sing 766 n n C3 C4 OCT sing 767 n n C3 H31 OCT sing 768 n n C3 H32 OCT sing 769 n n C4 C5 OCT sing 770 n n C4 H41 OCT sing 771 n n C4 H42 OCT sing 772 n n C5 C6 OCT sing 773 n n C5 H51 OCT sing 774 n n C5 H52 OCT sing 775 n n C6 C7 OCT sing 776 n n C6 H61 OCT sing 777 n n C6 H62 OCT sing 778 n n C7 C8 OCT sing 779 n n C7 H71 OCT sing 780 n n C7 H72 OCT sing 781 n n C8 H81 OCT sing 782 n n C8 H82 OCT sing 783 n n C8 H83 OCT sing 784 n n # _atom_sites.entry_id 4H13 _atom_sites.fract_transf_matrix[1][1] 0.006361 _atom_sites.fract_transf_matrix[1][2] 0.003673 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007346 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002753 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 9 CD A 1 301 301 CD CD . J 10 HEM A 1 302 302 HEM HEM . K 10 HEM A 1 303 303 HEM HEM . L 10 HEM A 1 304 304 HEM HEM . M 11 OPC A 1 305 305 OPC OPC . N 12 MYS A 1 306 306 MYS MYS . O 13 8K6 A 1 307 310 8K6 8K6 . P 14 UMQ A 1 308 308 UMQ UMQ . Q 15 TDS A 1 309 204 TDS TDS . R 15 TDS B 1 201 309 TDS TDS . S 14 UMQ B 1 202 201 UMQ UMQ . T 16 CLA B 1 203 202 CLA CLA . U 11 OPC B 1 204 203 OPC OPC . V 17 7PH C 1 301 303 7PH 7PH . W 10 HEM C 1 302 301 HEM HEM . X 18 SQD D 1 201 205 SQD SQD . Y 19 FES D 1 202 200 FES FES . Z 20 OCT F 1 101 102 OCT OCT . AA 21 BCR G 1 101 101 BCR BCR . BA 22 HOH A 1 401 401 HOH HOH . BA 22 HOH A 2 402 402 HOH HOH . BA 22 HOH A 3 403 6 HOH HOH . BA 22 HOH A 4 404 7 HOH HOH . BA 22 HOH A 5 405 8 HOH HOH . BA 22 HOH A 6 406 9 HOH HOH . BA 22 HOH A 7 407 10 HOH HOH . BA 22 HOH A 8 408 11 HOH HOH . BA 22 HOH A 9 409 12 HOH HOH . BA 22 HOH A 10 410 13 HOH HOH . BA 22 HOH A 11 411 14 HOH HOH . BA 22 HOH A 12 412 15 HOH HOH . CA 22 HOH B 1 301 301 HOH HOH . CA 22 HOH B 2 302 302 HOH HOH . CA 22 HOH B 3 303 303 HOH HOH . CA 22 HOH B 4 304 304 HOH HOH . CA 22 HOH B 5 305 3 HOH HOH . CA 22 HOH B 6 306 16 HOH HOH . DA 22 HOH C 1 401 401 HOH HOH . DA 22 HOH C 2 402 4 HOH HOH . DA 22 HOH C 3 403 5 HOH HOH . DA 22 HOH C 4 404 17 HOH HOH . EA 22 HOH F 1 201 1 HOH HOH . FA 22 HOH G 1 201 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OCT . . . Z 20 -26.569 86.138 -10.194 1 104.17 ? C1 OCT 101 F 1 HETATM 2 C C2 OCT . . . Z 20 -27.656 86.564 -9.264 1 107.46 ? C2 OCT 101 F 1 HETATM 3 C C3 OCT . . . Z 20 -28.976 86.619 -9.963 1 103.96 ? C3 OCT 101 F 1 HETATM 4 C C4 OCT . . . Z 20 -29.57 85.262 -10.162 1 108.8 ? C4 OCT 101 F 1 HETATM 5 C C5 OCT . . . Z 20 -31.007 85.429 -10.537 1 105.54 ? C5 OCT 101 F 1 HETATM 6 C C6 OCT . . . Z 20 -31.606 84.145 -11.011 1 110.76 ? C6 OCT 101 F 1 HETATM 7 C C7 OCT . . . Z 20 -33.041 84.371 -11.365 1 109.24 ? C7 OCT 101 F 1 HETATM 8 C C8 OCT . . . Z 20 -33.551 83.262 -12.225 1 98 ? C8 OCT 101 F 1 HETATM 9 H H11 OCT . . . Z 20 -26.771 85.256 -10.544 1 125 ? H11 OCT 101 F 1 HETATM 10 H H12 OCT . . . Z 20 -25.726 86.111 -9.716 1 125 ? H12 OCT 101 F 1 HETATM 11 H H13 OCT . . . Z 20 -26.505 86.769 -10.928 1 125 ? H13 OCT 101 F 1 HETATM 12 H H21 OCT . . . Z 20 -27.71 85.942 -8.521 1 128.95 ? H21 OCT 101 F 1 HETATM 13 H H22 OCT . . . Z 20 -27.442 87.448 -8.925 1 128.95 ? H22 OCT 101 F 1 HETATM 14 H H31 OCT . . . Z 20 -29.592 87.154 -9.439 1 124.75 ? H31 OCT 101 F 1 HETATM 15 H H32 OCT . . . Z 20 -28.862 87.044 -10.828 1 124.75 ? H32 OCT 101 F 1 HETATM 16 H H41 OCT . . . Z 20 -29.096 84.8 -10.871 1 130.56 ? H41 OCT 101 F 1 HETATM 17 H H42 OCT . . . Z 20 -29.506 84.752 -9.34 1 130.56 ? H42 OCT 101 F 1 HETATM 18 H H51 OCT . . . Z 20 -31.502 85.745 -9.765 1 126.64 ? H51 OCT 101 F 1 HETATM 19 H H52 OCT . . . Z 20 -31.073 86.086 -11.247 1 126.64 ? H52 OCT 101 F 1 HETATM 20 H H61 OCT . . . Z 20 -31.127 83.824 -11.791 1 132.91 ? H61 OCT 101 F 1 HETATM 21 H H62 OCT . . . Z 20 -31.55 83.479 -10.309 1 132.91 ? H62 OCT 101 F 1 HETATM 22 H H71 OCT . . . Z 20 -33.121 85.208 -11.849 1 131.09 ? H71 OCT 101 F 1 HETATM 23 H H72 OCT . . . Z 20 -33.569 84.42 -10.553 1 131.09 ? H72 OCT 101 F 1 HETATM 24 H H81 OCT . . . Z 20 -33.473 82.421 -11.748 1 117.6 ? H81 OCT 101 F 1 HETATM 25 H H82 OCT . . . Z 20 -34.481 83.425 -12.444 1 117.6 ? H82 OCT 101 F 1 HETATM 26 H H83 OCT . . . Z 20 -33.029 83.221 -13.042 1 117.6 ? H83 OCT 101 F 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #