data_4H13
#
_model_server_result.job_id            -EhMhE9xnKXI2J4-SknSrw 
_model_server_result.datetime_utc      '2024-11-22 20:53:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4h13 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":301}' 
#
_entry.id    4H13 
#
_exptl.entry_id    4H13 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              112.411 
_entity.id                          9 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CADMIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4H13 
_cell.length_a            157.197 
_cell.length_b            157.197 
_cell.length_c            363.276 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4H13 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexadecameric 
_pdbx_struct_assembly.oligomeric_count      16 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -78.5985 136.136595 60.546 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      9 
_struct_asym.id                             I 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 108 D CYS 108 1_555 D SG CYS 126 D CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf2 D SG CYS 113 D CYS 113 1_555 D SG CYS 128 D CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
metalc ? metalc1 A OE2 GLU 75 A GLU 75 1_555 I CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? 
metalc ? metalc2 A NE2 HIS 86 A HIS 86 1_555 J FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? 
metalc ? metalc3 A NE2 HIS 100 A HIS 100 1_555 K FE HEM . A HEM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? 
metalc ? metalc4 A NE2 HIS 187 A HIS 187 1_555 J FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
metalc ? metalc5 A NE2 HIS 202 A HIS 202 1_555 K FE HEM . A HEM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? 
metalc ? metalc6 I CD CD . A CD 301 1_555 BA O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? 
metalc ? metalc7 I CD CD . A CD 301 1_555 C NE2 HIS 143 C HIS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? 
metalc ? metalc8 I CD CD . A CD 301 1_555 DA O HOH . C HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? 
metalc ? metalc9 L FE HEM . A HEM 304 1_555 BA O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? 
metalc ? metalc10 L FE HEM . A HEM 304 1_555 R OBD TDS . B TDS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.913 ? 
metalc ? metalc11 T MG CLA . B CLA 203 1_555 CA O HOH . B HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.777 ? 
metalc ? metalc12 C N TYR 1 C TYR 1 1_555 W FE HEM . C HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? 
metalc ? metalc13 C NE2 HIS 26 C HIS 26 1_555 W FE HEM . C HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? 
metalc ? metalc14 D SG CYS 108 D CYS 108 1_555 Y FE1 FES . D FES 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? 
metalc ? metalc15 D ND1 HIS 110 D HIS 110 1_555 Y FE2 FES . D FES 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? 
metalc ? metalc16 D SG CYS 126 D CYS 126 1_555 Y FE1 FES . D FES 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? 
metalc ? metalc17 D ND1 HIS 129 D HIS 129 1_555 Y FE2 FES . D FES 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? 
#
_chem_comp.formula           'Cd 2' 
_chem_comp.formula_weight    112.411 
_chem_comp.id                CD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CADMIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4H13 
_atom_sites.fract_transf_matrix[1][1]    0.006361 
_atom_sites.fract_transf_matrix[1][2]    0.003673 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007346 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002753 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 9 CD A 1 301 301 CD CD . 
J 10 HEM A 1 302 302 HEM HEM . 
K 10 HEM A 1 303 303 HEM HEM . 
L 10 HEM A 1 304 304 HEM HEM . 
M 11 OPC A 1 305 305 OPC OPC . 
N 12 MYS A 1 306 306 MYS MYS . 
O 13 8K6 A 1 307 310 8K6 8K6 . 
P 14 UMQ A 1 308 308 UMQ UMQ . 
Q 15 TDS A 1 309 204 TDS TDS . 
R 15 TDS B 1 201 309 TDS TDS . 
S 14 UMQ B 1 202 201 UMQ UMQ . 
T 16 CLA B 1 203 202 CLA CLA . 
U 11 OPC B 1 204 203 OPC OPC . 
V 17 7PH C 1 301 303 7PH 7PH . 
W 10 HEM C 1 302 301 HEM HEM . 
X 18 SQD D 1 201 205 SQD SQD . 
Y 19 FES D 1 202 200 FES FES . 
Z 20 OCT F 1 101 102 OCT OCT . 
AA 21 BCR G 1 101 101 BCR BCR . 
BA 22 HOH A 1 401 401 HOH HOH . 
BA 22 HOH A 2 402 402 HOH HOH . 
BA 22 HOH A 3 403 6 HOH HOH . 
BA 22 HOH A 4 404 7 HOH HOH . 
BA 22 HOH A 5 405 8 HOH HOH . 
BA 22 HOH A 6 406 9 HOH HOH . 
BA 22 HOH A 7 407 10 HOH HOH . 
BA 22 HOH A 8 408 11 HOH HOH . 
BA 22 HOH A 9 409 12 HOH HOH . 
BA 22 HOH A 10 410 13 HOH HOH . 
BA 22 HOH A 11 411 14 HOH HOH . 
BA 22 HOH A 12 412 15 HOH HOH . 
CA 22 HOH B 1 301 301 HOH HOH . 
CA 22 HOH B 2 302 302 HOH HOH . 
CA 22 HOH B 3 303 303 HOH HOH . 
CA 22 HOH B 4 304 304 HOH HOH . 
CA 22 HOH B 5 305 3 HOH HOH . 
CA 22 HOH B 6 306 16 HOH HOH . 
DA 22 HOH C 1 401 401 HOH HOH . 
DA 22 HOH C 2 402 4 HOH HOH . 
DA 22 HOH C 3 403 5 HOH HOH . 
DA 22 HOH C 4 404 17 HOH HOH . 
EA 22 HOH F 1 201 1 HOH HOH . 
FA 22 HOH G 1 201 2 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CD 
_atom_site.label_atom_id         CD 
_atom_site.label_comp_id         CD 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         I 
_atom_site.label_entity_id       9 
_atom_site.Cartn_x               -69.115 
_atom_site.Cartn_y               71.197 
_atom_site.Cartn_z               17.247 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        97.56 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CD 
_atom_site.auth_comp_id          CD 
_atom_site.auth_seq_id           301 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           253 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           1 
#