data_4H13 # _model_server_result.job_id odiwg11Xv8apd6JVh1N9hw _model_server_result.datetime_utc '2024-11-26 08:00:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4h13 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":306}' # _entry.id 4H13 # _exptl.entry_id 4H13 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 212.415 _entity.id 12 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PENTADECANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4H13 _cell.length_a 157.197 _cell.length_b 157.197 _cell.length_c 363.276 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4H13 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -78.5985 136.136595 60.546 # _struct_asym.details ? _struct_asym.entity_id 12 _struct_asym.id N _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 108 D CYS 108 1_555 D SG CYS 126 D CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf2 D SG CYS 113 D CYS 113 1_555 D SG CYS 128 D CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc1 A OE2 GLU 75 A GLU 75 1_555 I CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc2 A NE2 HIS 86 A HIS 86 1_555 J FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc3 A NE2 HIS 100 A HIS 100 1_555 K FE HEM . A HEM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc4 A NE2 HIS 187 A HIS 187 1_555 J FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc5 A NE2 HIS 202 A HIS 202 1_555 K FE HEM . A HEM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc6 I CD CD . A CD 301 1_555 BA O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc7 I CD CD . A CD 301 1_555 C NE2 HIS 143 C HIS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc8 I CD CD . A CD 301 1_555 DA O HOH . C HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc9 L FE HEM . A HEM 304 1_555 BA O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? metalc ? metalc10 L FE HEM . A HEM 304 1_555 R OBD TDS . B TDS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.913 ? metalc ? metalc11 T MG CLA . B CLA 203 1_555 CA O HOH . B HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.777 ? metalc ? metalc12 C N TYR 1 C TYR 1 1_555 W FE HEM . C HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc13 C NE2 HIS 26 C HIS 26 1_555 W FE HEM . C HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc14 D SG CYS 108 D CYS 108 1_555 Y FE1 FES . D FES 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc15 D ND1 HIS 110 D HIS 110 1_555 Y FE2 FES . D FES 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc16 D SG CYS 126 D CYS 126 1_555 Y FE1 FES . D FES 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc17 D ND1 HIS 129 D HIS 129 1_555 Y FE2 FES . D FES 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? # _chem_comp.formula 'C15 H32' _chem_comp.formula_weight 212.415 _chem_comp.id MYS _chem_comp.mon_nstd_flag . _chem_comp.name PENTADECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MYS sing 714 n n C1 H11 MYS sing 715 n n C1 H12 MYS sing 716 n n C1 H13 MYS sing 717 n n C2 C3 MYS sing 718 n n C2 H21 MYS sing 719 n n C2 H22 MYS sing 720 n n C3 C4 MYS sing 721 n n C3 H31 MYS sing 722 n n C3 H32 MYS sing 723 n n C4 C5 MYS sing 724 n n C4 H41 MYS sing 725 n n C4 H42 MYS sing 726 n n C5 C6 MYS sing 727 n n C5 H51 MYS sing 728 n n C5 H52 MYS sing 729 n n C6 C7 MYS sing 730 n n C6 H61 MYS sing 731 n n C6 H62 MYS sing 732 n n C7 C8 MYS sing 733 n n C7 H71 MYS sing 734 n n C7 H72 MYS sing 735 n n C8 C9 MYS sing 736 n n C8 H81 MYS sing 737 n n C8 H82 MYS sing 738 n n C9 C10 MYS sing 739 n n C9 H91 MYS sing 740 n n C9 H92 MYS sing 741 n n C10 C11 MYS sing 742 n n C10 H101 MYS sing 743 n n C10 H102 MYS sing 744 n n C11 C12 MYS sing 745 n n C11 H111 MYS sing 746 n n C11 H112 MYS sing 747 n n C12 C13 MYS sing 748 n n C12 H121 MYS sing 749 n n C12 H122 MYS sing 750 n n C13 C14 MYS sing 751 n n C13 H131 MYS sing 752 n n C13 H132 MYS sing 753 n n C14 C15 MYS sing 754 n n C14 H141 MYS sing 755 n n C14 H142 MYS sing 756 n n C15 H151 MYS sing 757 n n C15 H152 MYS sing 758 n n C15 H153 MYS sing 759 n n # _atom_sites.entry_id 4H13 _atom_sites.fract_transf_matrix[1][1] 0.006361 _atom_sites.fract_transf_matrix[1][2] 0.003673 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007346 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002753 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 9 CD A 1 301 301 CD CD . J 10 HEM A 1 302 302 HEM HEM . K 10 HEM A 1 303 303 HEM HEM . L 10 HEM A 1 304 304 HEM HEM . M 11 OPC A 1 305 305 OPC OPC . N 12 MYS A 1 306 306 MYS MYS . O 13 8K6 A 1 307 310 8K6 8K6 . P 14 UMQ A 1 308 308 UMQ UMQ . Q 15 TDS A 1 309 204 TDS TDS . R 15 TDS B 1 201 309 TDS TDS . S 14 UMQ B 1 202 201 UMQ UMQ . T 16 CLA B 1 203 202 CLA CLA . U 11 OPC B 1 204 203 OPC OPC . V 17 7PH C 1 301 303 7PH 7PH . W 10 HEM C 1 302 301 HEM HEM . X 18 SQD D 1 201 205 SQD SQD . Y 19 FES D 1 202 200 FES FES . Z 20 OCT F 1 101 102 OCT OCT . AA 21 BCR G 1 101 101 BCR BCR . BA 22 HOH A 1 401 401 HOH HOH . BA 22 HOH A 2 402 402 HOH HOH . BA 22 HOH A 3 403 6 HOH HOH . BA 22 HOH A 4 404 7 HOH HOH . BA 22 HOH A 5 405 8 HOH HOH . BA 22 HOH A 6 406 9 HOH HOH . BA 22 HOH A 7 407 10 HOH HOH . BA 22 HOH A 8 408 11 HOH HOH . BA 22 HOH A 9 409 12 HOH HOH . BA 22 HOH A 10 410 13 HOH HOH . BA 22 HOH A 11 411 14 HOH HOH . BA 22 HOH A 12 412 15 HOH HOH . CA 22 HOH B 1 301 301 HOH HOH . CA 22 HOH B 2 302 302 HOH HOH . CA 22 HOH B 3 303 303 HOH HOH . CA 22 HOH B 4 304 304 HOH HOH . CA 22 HOH B 5 305 3 HOH HOH . CA 22 HOH B 6 306 16 HOH HOH . DA 22 HOH C 1 401 401 HOH HOH . DA 22 HOH C 2 402 4 HOH HOH . DA 22 HOH C 3 403 5 HOH HOH . DA 22 HOH C 4 404 17 HOH HOH . EA 22 HOH F 1 201 1 HOH HOH . FA 22 HOH G 1 201 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MYS . . . N 12 -33.623 56.64 21.612 1 76.51 ? C1 MYS 306 A 1 HETATM 2 C C2 MYS . . . N 12 -35.049 56.238 21.786 1 108.09 ? C2 MYS 306 A 1 HETATM 3 C C3 MYS . . . N 12 -35.343 55.984 23.227 1 105.68 ? C3 MYS 306 A 1 HETATM 4 C C4 MYS . . . N 12 -36.82 55.913 23.42 1 91.51 ? C4 MYS 306 A 1 HETATM 5 C C5 MYS . . . N 12 -37.145 55.462 24.804 1 92.43 ? C5 MYS 306 A 1 HETATM 6 C C6 MYS . . . N 12 -38.624 55.514 24.997 1 83.18 ? C6 MYS 306 A 1 HETATM 7 C C7 MYS . . . N 12 -39.178 54.15 25.249 1 92.18 ? C7 MYS 306 A 1 HETATM 8 C C8 MYS . . . N 12 -40.593 54.106 24.777 1 83.81 ? C8 MYS 306 A 1 HETATM 9 C C9 MYS . . . N 12 -40.676 53.633 23.362 1 104.36 ? C9 MYS 306 A 1 HETATM 10 C C10 MYS . . . N 12 -40.024 54.567 22.393 1 93.99 ? C10 MYS 306 A 1 HETATM 11 C C11 MYS . . . N 12 -39.969 53.896 21.064 1 103.95 ? C11 MYS 306 A 1 HETATM 12 C C12 MYS . . . N 12 -39.235 54.711 20.052 1 72.77 ? C12 MYS 306 A 1 HETATM 13 C C13 MYS . . . N 12 -39.038 53.885 18.822 1 75.21 ? C13 MYS 306 A 1 HETATM 14 C C14 MYS . . . N 12 -38.642 54.76 17.68 1 90.2 ? C14 MYS 306 A 1 HETATM 15 C C15 MYS . . . N 12 -37.941 53.96 16.633 1 84.87 ? C15 MYS 306 A 1 HETATM 16 H H11 MYS . . . N 12 -33.45 57.448 22.12 1 91.81 ? H11 MYS 306 A 1 HETATM 17 H H12 MYS . . . N 12 -33.447 56.806 20.672 1 91.81 ? H12 MYS 306 A 1 HETATM 18 H H13 MYS . . . N 12 -33.045 55.929 21.929 1 91.81 ? H13 MYS 306 A 1 HETATM 19 H H21 MYS . . . N 12 -35.621 56.953 21.466 1 129.71 ? H21 MYS 306 A 1 HETATM 20 H H22 MYS . . . N 12 -35.224 55.433 21.275 1 129.71 ? H22 MYS 306 A 1 HETATM 21 H H31 MYS . . . N 12 -34.938 55.145 23.497 1 126.82 ? H31 MYS 306 A 1 HETATM 22 H H32 MYS . . . N 12 -34.982 56.706 23.765 1 126.82 ? H32 MYS 306 A 1 HETATM 23 H H41 MYS . . . N 12 -37.196 55.286 22.784 1 109.82 ? H41 MYS 306 A 1 HETATM 24 H H42 MYS . . . N 12 -37.204 56.791 23.269 1 109.82 ? H42 MYS 306 A 1 HETATM 25 H H51 MYS . . . N 12 -36.707 56.03 25.457 1 110.91 ? H51 MYS 306 A 1 HETATM 26 H H52 MYS . . . N 12 -36.841 54.547 24.912 1 110.91 ? H52 MYS 306 A 1 HETATM 27 H H61 MYS . . . N 12 -39.045 55.889 24.208 1 99.82 ? H61 MYS 306 A 1 HETATM 28 H H62 MYS . . . N 12 -38.827 56.081 25.757 1 99.82 ? H62 MYS 306 A 1 HETATM 29 H H71 MYS . . . N 12 -38.656 53.488 24.771 1 110.61 ? H71 MYS 306 A 1 HETATM 30 H H72 MYS . . . N 12 -39.146 53.964 26.201 1 110.61 ? H72 MYS 306 A 1 HETATM 31 H H81 MYS . . . N 12 -41.112 53.513 25.343 1 100.58 ? H81 MYS 306 A 1 HETATM 32 H H82 MYS . . . N 12 -40.962 55.001 24.833 1 100.58 ? H82 MYS 306 A 1 HETATM 33 H H91 MYS . . . N 12 -41.609 53.534 23.118 1 125.23 ? H91 MYS 306 A 1 HETATM 34 H H92 MYS . . . N 12 -40.243 52.767 23.299 1 125.23 ? H92 MYS 306 A 1 HETATM 35 H H101 MYS . . . N 12 -39.123 54.769 22.692 1 112.79 ? H101 MYS 306 A 1 HETATM 36 H H102 MYS . . . N 12 -40.538 55.387 22.329 1 112.79 ? H102 MYS 306 A 1 HETATM 37 H H111 MYS . . . N 12 -39.526 53.038 21.156 1 124.74 ? H111 MYS 306 A 1 HETATM 38 H H112 MYS . . . N 12 -40.873 53.742 20.746 1 124.74 ? H112 MYS 306 A 1 HETATM 39 H H121 MYS . . . N 12 -39.741 55.508 19.833 1 87.32 ? H121 MYS 306 A 1 HETATM 40 H H122 MYS . . . N 12 -38.37 54.97 20.405 1 87.32 ? H122 MYS 306 A 1 HETATM 41 H H131 MYS . . . N 12 -39.868 53.434 18.601 1 90.25 ? H131 MYS 306 A 1 HETATM 42 H H132 MYS . . . N 12 -38.35 53.218 18.976 1 90.25 ? H132 MYS 306 A 1 HETATM 43 H H141 MYS . . . N 12 -39.434 55.172 17.3 1 108.24 ? H141 MYS 306 A 1 HETATM 44 H H142 MYS . . . N 12 -38.044 55.452 18.003 1 108.24 ? H142 MYS 306 A 1 HETATM 45 H H151 MYS . . . N 12 -37.691 54.541 15.897 1 101.85 ? H151 MYS 306 A 1 HETATM 46 H H152 MYS . . . N 12 -38.532 53.263 16.308 1 101.85 ? H152 MYS 306 A 1 HETATM 47 H H153 MYS . . . N 12 -37.144 53.558 17.012 1 101.85 ? H153 MYS 306 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 386 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 47 #