data_4H13 # _model_server_result.job_id O76lAUxKTTAd2ErUvUd4gg _model_server_result.datetime_utc '2024-11-22 20:47:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4h13 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":307}' # _entry.id 4H13 # _exptl.entry_id 4H13 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 254.494 _entity.id 13 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Octadecane _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4H13 _cell.length_a 157.197 _cell.length_b 157.197 _cell.length_c 363.276 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4H13 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -78.5985 136.136595 60.546 # _struct_asym.details ? _struct_asym.entity_id 13 _struct_asym.id O _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 108 D CYS 108 1_555 D SG CYS 126 D CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf2 D SG CYS 113 D CYS 113 1_555 D SG CYS 128 D CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc1 A OE2 GLU 75 A GLU 75 1_555 I CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc2 A NE2 HIS 86 A HIS 86 1_555 J FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc3 A NE2 HIS 100 A HIS 100 1_555 K FE HEM . A HEM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc4 A NE2 HIS 187 A HIS 187 1_555 J FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc5 A NE2 HIS 202 A HIS 202 1_555 K FE HEM . A HEM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc6 I CD CD . A CD 301 1_555 BA O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc7 I CD CD . A CD 301 1_555 C NE2 HIS 143 C HIS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc8 I CD CD . A CD 301 1_555 DA O HOH . C HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc9 L FE HEM . A HEM 304 1_555 BA O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? metalc ? metalc10 L FE HEM . A HEM 304 1_555 R OBD TDS . B TDS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.913 ? metalc ? metalc11 T MG CLA . B CLA 203 1_555 CA O HOH . B HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.777 ? metalc ? metalc12 C N TYR 1 C TYR 1 1_555 W FE HEM . C HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc13 C NE2 HIS 26 C HIS 26 1_555 W FE HEM . C HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc14 D SG CYS 108 D CYS 108 1_555 Y FE1 FES . D FES 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc15 D ND1 HIS 110 D HIS 110 1_555 Y FE2 FES . D FES 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc16 D SG CYS 126 D CYS 126 1_555 Y FE1 FES . D FES 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc17 D ND1 HIS 129 D HIS 129 1_555 Y FE2 FES . D FES 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? # _chem_comp.formula 'C18 H38' _chem_comp.formula_weight 254.494 _chem_comp.id 8K6 _chem_comp.mon_nstd_flag . _chem_comp.name Octadecane _chem_comp.type non-polymer _chem_comp.pdbx_synonyms N-Octadecane # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 8K6 sing 95 n n C2 C3 8K6 sing 96 n n C3 C4 8K6 sing 97 n n C4 C5 8K6 sing 98 n n C5 C6 8K6 sing 99 n n C6 C7 8K6 sing 100 n n C7 C8 8K6 sing 101 n n C8 C9 8K6 sing 102 n n C9 C10 8K6 sing 103 n n C10 C11 8K6 sing 104 n n C11 C12 8K6 sing 105 n n C12 C13 8K6 sing 106 n n C13 C14 8K6 sing 107 n n C14 C15 8K6 sing 108 n n C15 C16 8K6 sing 109 n n C16 C17 8K6 sing 110 n n C17 C18 8K6 sing 111 n n C1 H11C 8K6 sing 112 n n C1 H12C 8K6 sing 113 n n C1 H13C 8K6 sing 114 n n C2 H21C 8K6 sing 115 n n C2 H22C 8K6 sing 116 n n C3 H31C 8K6 sing 117 n n C3 H32C 8K6 sing 118 n n C4 H41C 8K6 sing 119 n n C4 H42C 8K6 sing 120 n n C5 H51C 8K6 sing 121 n n C5 H52C 8K6 sing 122 n n C6 H61C 8K6 sing 123 n n C6 H62C 8K6 sing 124 n n C7 H71C 8K6 sing 125 n n C7 H72C 8K6 sing 126 n n C8 H81C 8K6 sing 127 n n C8 H82C 8K6 sing 128 n n C9 H91C 8K6 sing 129 n n C9 H92C 8K6 sing 130 n n C10 H101 8K6 sing 131 n n C10 H102 8K6 sing 132 n n C11 H111 8K6 sing 133 n n C11 H112 8K6 sing 134 n n C12 H121 8K6 sing 135 n n C12 H122 8K6 sing 136 n n C13 H131 8K6 sing 137 n n C13 H132 8K6 sing 138 n n C14 H141 8K6 sing 139 n n C14 H142 8K6 sing 140 n n C15 H151 8K6 sing 141 n n C15 H152 8K6 sing 142 n n C16 H161 8K6 sing 143 n n C16 H162 8K6 sing 144 n n C17 H171 8K6 sing 145 n n C17 H172 8K6 sing 146 n n C18 H181 8K6 sing 147 n n C18 H182 8K6 sing 148 n n C18 H183 8K6 sing 149 n n # _atom_sites.entry_id 4H13 _atom_sites.fract_transf_matrix[1][1] 0.006361 _atom_sites.fract_transf_matrix[1][2] 0.003673 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007346 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002753 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 9 CD A 1 301 301 CD CD . J 10 HEM A 1 302 302 HEM HEM . K 10 HEM A 1 303 303 HEM HEM . L 10 HEM A 1 304 304 HEM HEM . M 11 OPC A 1 305 305 OPC OPC . N 12 MYS A 1 306 306 MYS MYS . O 13 8K6 A 1 307 310 8K6 8K6 . P 14 UMQ A 1 308 308 UMQ UMQ . Q 15 TDS A 1 309 204 TDS TDS . R 15 TDS B 1 201 309 TDS TDS . S 14 UMQ B 1 202 201 UMQ UMQ . T 16 CLA B 1 203 202 CLA CLA . U 11 OPC B 1 204 203 OPC OPC . V 17 7PH C 1 301 303 7PH 7PH . W 10 HEM C 1 302 301 HEM HEM . X 18 SQD D 1 201 205 SQD SQD . Y 19 FES D 1 202 200 FES FES . Z 20 OCT F 1 101 102 OCT OCT . AA 21 BCR G 1 101 101 BCR BCR . BA 22 HOH A 1 401 401 HOH HOH . BA 22 HOH A 2 402 402 HOH HOH . BA 22 HOH A 3 403 6 HOH HOH . BA 22 HOH A 4 404 7 HOH HOH . BA 22 HOH A 5 405 8 HOH HOH . BA 22 HOH A 6 406 9 HOH HOH . BA 22 HOH A 7 407 10 HOH HOH . BA 22 HOH A 8 408 11 HOH HOH . BA 22 HOH A 9 409 12 HOH HOH . BA 22 HOH A 10 410 13 HOH HOH . BA 22 HOH A 11 411 14 HOH HOH . BA 22 HOH A 12 412 15 HOH HOH . CA 22 HOH B 1 301 301 HOH HOH . CA 22 HOH B 2 302 302 HOH HOH . CA 22 HOH B 3 303 303 HOH HOH . CA 22 HOH B 4 304 304 HOH HOH . CA 22 HOH B 5 305 3 HOH HOH . CA 22 HOH B 6 306 16 HOH HOH . DA 22 HOH C 1 401 401 HOH HOH . DA 22 HOH C 2 402 4 HOH HOH . DA 22 HOH C 3 403 5 HOH HOH . DA 22 HOH C 4 404 17 HOH HOH . EA 22 HOH F 1 201 1 HOH HOH . FA 22 HOH G 1 201 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 8K6 . . . O 13 -43.039 78.564 25.391 1 104.29 ? C1 8K6 307 A 1 HETATM 2 C C2 8K6 . . . O 13 -43.92 77.438 25.82 1 110.22 ? C2 8K6 307 A 1 HETATM 3 C C3 8K6 . . . O 13 -44.264 77.35 27.279 1 118.75 ? C3 8K6 307 A 1 HETATM 4 C C4 8K6 . . . O 13 -43.347 76.544 28.142 1 115.34 ? C4 8K6 307 A 1 HETATM 5 C C5 8K6 . . . O 13 -43.706 76.32 29.565 1 97.8 ? C5 8K6 307 A 1 HETATM 6 C C6 8K6 . . . O 13 -42.668 75.613 30.39 1 94.36 ? C6 8K6 307 A 1 HETATM 7 C C7 8K6 . . . O 13 -41.409 76.394 30.668 1 91.74 ? C7 8K6 307 A 1 HETATM 8 C C8 8K6 . . . O 13 -40.265 76.139 29.717 1 104.86 ? C8 8K6 307 A 1 HETATM 9 C C9 8K6 . . . O 13 -38.978 76.9 29.866 1 108.61 ? C9 8K6 307 A 1 HETATM 10 C C10 8K6 . . . O 13 -38.119 76.949 28.629 1 102.5 ? C10 8K6 307 A 1 HETATM 11 C C11 8K6 . . . O 13 -37.564 75.634 28.122 1 105.9 ? C11 8K6 307 A 1 HETATM 12 C C12 8K6 . . . O 13 -37.187 75.552 26.666 1 110.52 ? C12 8K6 307 A 1 HETATM 13 C C13 8K6 . . . O 13 -36.729 74.218 26.12 1 100.72 ? C13 8K6 307 A 1 HETATM 14 C C14 8K6 . . . O 13 -35.907 74.238 24.852 1 83.72 ? C14 8K6 307 A 1 HETATM 15 C C15 8K6 . . . O 13 -34.85 73.173 24.693 1 99.07 ? C15 8K6 307 A 1 HETATM 16 C C16 8K6 . . . O 13 -33.667 73.522 23.863 1 94.8 ? C16 8K6 307 A 1 HETATM 17 C C17 8K6 . . . O 13 -32.334 73.092 24.368 1 110.92 ? C17 8K6 307 A 1 HETATM 18 C C18 8K6 . . . O 13 -31.136 73.87 23.925 1 96.15 ? C18 8K6 307 A 1 HETATM 19 H H11C 8K6 . . . O 13 -43.4 79.401 25.723 1 125.15 ? H11C 8K6 307 A 1 HETATM 20 H H12C 8K6 . . . O 13 -42.147 78.432 25.75 1 125.15 ? H12C 8K6 307 A 1 HETATM 21 H H13C 8K6 . . . O 13 -42.997 78.591 24.41 1 125.15 ? H13C 8K6 307 A 1 HETATM 22 H H21C 8K6 . . . O 13 -43.454 76.61 25.583 1 132.27 ? H21C 8K6 307 A 1 HETATM 23 H H22C 8K6 . . . O 13 -44.742 77.474 25.314 1 132.27 ? H22C 8K6 307 A 1 HETATM 24 H H31C 8K6 . . . O 13 -44.296 78.257 27.635 1 142.49 ? H31C 8K6 307 A 1 HETATM 25 H H32C 8K6 . . . O 13 -45.152 76.965 27.353 1 142.49 ? H32C 8K6 307 A 1 HETATM 26 H H41C 8K6 . . . O 13 -43.24 75.676 27.726 1 138.41 ? H41C 8K6 307 A 1 HETATM 27 H H42C 8K6 . . . O 13 -42.478 76.986 28.131 1 138.41 ? H42C 8K6 307 A 1 HETATM 28 H H51C 8K6 . . . O 13 -43.855 77.192 29.965 1 117.36 ? H51C 8K6 307 A 1 HETATM 29 H H52C 8K6 . . . O 13 -44.539 75.816 29.609 1 117.36 ? H52C 8K6 307 A 1 HETATM 30 H H61C 8K6 . . . O 13 -43.064 75.34 31.241 1 113.23 ? H61C 8K6 307 A 1 HETATM 31 H H62C 8K6 . . . O 13 -42.412 74.811 29.9 1 113.23 ? H62C 8K6 307 A 1 HETATM 32 H H71C 8K6 . . . O 13 -41.618 77.342 30.654 1 110.09 ? H71C 8K6 307 A 1 HETATM 33 H H72C 8K6 . . . O 13 -41.104 76.17 31.565 1 110.09 ? H72C 8K6 307 A 1 HETATM 34 H H81C 8K6 . . . O 13 -40.596 76.32 28.825 1 125.83 ? H81C 8K6 307 A 1 HETATM 35 H H82C 8K6 . . . O 13 -40.052 75.191 29.762 1 125.83 ? H82C 8K6 307 A 1 HETATM 36 H H91C 8K6 . . . O 13 -39.172 77.803 30.146 1 130.33 ? H91C 8K6 307 A 1 HETATM 37 H H92C 8K6 . . . O 13 -38.468 76.467 30.562 1 130.33 ? H92C 8K6 307 A 1 HETATM 38 H H101 8K6 . . . O 13 -37.373 77.539 28.804 1 123 ? H101 8K6 307 A 1 HETATM 39 H H102 8K6 . . . O 13 -38.657 77.345 27.912 1 123 ? H102 8K6 307 A 1 HETATM 40 H H111 8K6 . . . O 13 -36.781 75.417 28.649 1 127.08 ? H111 8K6 307 A 1 HETATM 41 H H112 8K6 . . . O 13 -38.238 74.953 28.287 1 127.08 ? H112 8K6 307 A 1 HETATM 42 H H121 8K6 . . . O 13 -37.947 75.841 26.142 1 132.62 ? H121 8K6 307 A 1 HETATM 43 H H122 8K6 . . . O 13 -36.472 76.187 26.51 1 132.62 ? H122 8K6 307 A 1 HETATM 44 H H131 8K6 . . . O 13 -36.195 73.791 26.81 1 120.86 ? H131 8K6 307 A 1 HETATM 45 H H132 8K6 . . . O 13 -37.503 73.674 25.964 1 120.86 ? H132 8K6 307 A 1 HETATM 46 H H141 8K6 . . . O 13 -36.51 74.181 24.098 1 100.46 ? H141 8K6 307 A 1 HETATM 47 H H142 8K6 . . . O 13 -35.454 75.105 24.812 1 100.46 ? H142 8K6 307 A 1 HETATM 48 H H151 8K6 . . . O 13 -34.527 72.955 25.576 1 118.88 ? H151 8K6 307 A 1 HETATM 49 H H152 8K6 . . . O 13 -35.261 72.385 24.323 1 118.88 ? H152 8K6 307 A 1 HETATM 50 H H161 8K6 . . . O 13 -33.794 73.145 22.981 1 113.75 ? H161 8K6 307 A 1 HETATM 51 H H162 8K6 . . . O 13 -33.647 74.492 23.777 1 113.75 ? H162 8K6 307 A 1 HETATM 52 H H171 8K6 . . . O 13 -32.201 72.166 24.108 1 133.1 ? H171 8K6 307 A 1 HETATM 53 H H172 8K6 . . . O 13 -32.363 73.129 25.343 1 133.1 ? H172 8K6 307 A 1 HETATM 54 H H181 8K6 . . . O 13 -30.326 73.392 24.179 1 115.38 ? H181 8K6 307 A 1 HETATM 55 H H182 8K6 . . . O 13 -31.159 73.978 22.958 1 115.38 ? H182 8K6 307 A 1 HETATM 56 H H183 8K6 . . . O 13 -31.142 74.749 24.351 1 115.38 ? H183 8K6 307 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 56 #